Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 9.7e-186 653.3 318 100.0
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 5.4e-112 408.3 247 78.1
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 1.7e-110 403.3 244 77.5
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 1.2e-106 390.6 253 73.1
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 2.0e-106 389.8 246 74.8
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 4.2e-104 382.1 246 73.6
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 1.9e-101 373.2 243 71.6
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 3.3e-101 372.5 250 68.4
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 4.8e-100 368.6 248 72.2
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 1.1e-99 367.5 245 72.2
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 1.2e-98 364.0 243 70.0
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 4.5e-98 362.1 247 69.2
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 3.8e-97 359.0 250 69.6
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 8.4e-97 357.8 245 68.6
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 1.6e-95 353.6 243 71.6
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 2.1e-95 353.2 248 67.3
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 2.1e-95 353.2 257 67.7
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 2.1e-95 353.2 250 70.0
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 6.0e-95 351.7 245 68.2
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 1.8e-94 350.1 245 66.5
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 6.7e-94 348.2 245 67.8
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 6.7e-94 348.2 243 69.5
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 1.9e-93 346.7 260 64.2
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 1.9e-93 346.7 244 69.3
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 4.3e-93 345.5 240 67.9
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 5.6e-93 345.1 246 65.4
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 4.8e-92 342.0 259 63.7
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 1.1e-91 340.9 244 67.6
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.8e-91 340.1 250 64.0
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 3.1e-91 339.3 242 66.9
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 5.3e-91 338.6 246 64.6
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 6.9e-91 338.2 244 65.6
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 9.0e-91 337.8 240 68.8
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 1.2e-90 337.4 237 66.2
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 2.0e-90 336.7 244 66.0
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 2.6e-90 336.3 234 68.4
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.3e-89 334.0 243 64.2
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 2.9e-89 332.8 243 63.8
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 4.9e-89 332.0 251 64.5
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 4.9e-89 332.0 252 63.5
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 6.4e-89 331.6 249 63.9
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 7.1e-88 328.2 247 64.8
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 2.7e-87 326.2 238 66.8
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 2.7e-87 326.2 245 63.3
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 7.9e-87 324.7 243 62.6
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 1.3e-86 323.9 245 66.5
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 3.0e-86 322.8 243 63.4
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 3.0e-86 322.8 245 62.9
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 6.7e-86 321.6 243 61.7
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 8.7e-86 321.2 245 63.7
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 8.7e-86 321.2 245 63.7
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 8.7e-86 321.2 246 61.0
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 2.5e-85 319.7 247 64.0
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 1.3e-84 317.4 245 60.4
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 3.7e-84 315.8 244 61.9
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 6.2e-84 315.1 241 61.4
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 8.2e-84 314.7 245 63.7
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 1.1e-83 314.3 241 61.4
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 1.4e-83 313.9 237 62.9
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 2.4e-83 313.2 241 61.0
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 3.1e-83 312.8 248 62.5
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 6.9e-83 311.6 237 62.4
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 9.0e-83 311.2 190 76.3
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 9.0e-83 311.2 251 61.4
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 1.5e-82 310.5 244 61.9
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 5.8e-82 308.5 244 59.8
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 7.6e-82 308.1 251 60.2
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 7.6e-82 308.1 220 66.8
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 1.0e-81 307.8 246 62.6
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 1.3e-81 307.4 247 60.7
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 1.3e-81 307.4 245 59.2
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 2.2e-81 306.6 244 60.7
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 2.2e-81 306.6 261 59.0
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 2.9e-81 306.2 244 61.1
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 8.4e-81 304.7 244 61.1
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 8.4e-81 304.7 244 61.1
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 2.5e-80 303.1 237 62.4
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 5.5e-80 302.0 244 60.7
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 2.1e-79 300.1 247 60.3
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 2.7e-79 299.7 264 58.3
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 3.5e-79 299.3 247 58.7
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 1.3e-78 297.4 246 60.6
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 2.3e-78 296.6 234 60.3
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.9e-77 293.5 244 61.1
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 7.4e-77 291.6 266 56.4
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 1.3e-76 290.8 193 69.9
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 2.2e-76 290.0 257 55.6
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 6.3e-76 288.5 313 50.5
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 6.3e-76 288.5 256 55.9
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 6.3e-76 288.5 215 64.2
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 4.1e-75 285.8 215 63.3
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 5.1e-70 268.9 203 64.5
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 2.0e-69 266.9 244 55.3
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 1.8e-67 260.4 239 56.5
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 3.0e-62 243.0 332 43.1
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 2.0e-61 240.4 228 53.1
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 5.9e-58 228.8 228 52.2
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 8.5e-57 224.9 186 60.8
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 2.1e-55 220.3 236 51.3
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 5.0e-49 199.1 173 59.5
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 2.5e-48 196.8 247 46.2
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 2.3e-46 190.3 234 44.9
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 4.4e-45 186.0 249 43.8
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 3.1e-43 179.9 250 40.4
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 2.7e-39 166.8 280 38.9
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 2.6e-37 160.2 325 34.5
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 5.7e-29 132.5 108 57.4
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 1.5e-24 117.9 265 32.1
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 9.8e-21 105.1 148 43.9
FAN20G1265 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.2e-18 98.2 63 63.5
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 2.0e-18 97.4 102 47.1
CSS0043977 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D043334 2.0e-18 97.4 89 58.4
COL.COLO4_19820 Corchorus olitorius HOM05D001041 ORTHO05D000846 9.5e-08 62.0 59 59.3
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 3.6e-07 60.1 50 58.0


User provided reference genes

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