Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 0.0e+00 1536.2 782 100.0
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 1.9e-214 750.0 793 55.1
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 5.4e-214 748.4 793 55.1
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 7.9e-197 691.4 794 51.9
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 9.7e-155 551.6 802 44.5
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 9.8e-139 498.4 803 41.8
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 1.8e-137 494.2 819 41.5
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 2.3e-135 487.3 981 37.4
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 7.3e-134 482.3 884 39.1
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 3.0e-127 460.3 795 41.1
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 7.1e-121 439.1 897 37.9
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 1.6e-120 438.0 790 42.0
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 5.1e-119 433.0 780 38.2
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 2.5e-118 430.6 794 40.1
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 8.1e-117 425.6 822 39.4
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 8.1e-117 425.6 812 37.3
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 1.5e-115 421.4 792 38.4
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 4.4e-115 419.9 807 38.7
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 4.9e-114 416.4 891 37.6
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 5.2e-108 396.4 839 37.2
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 2.2e-106 391.0 783 39.2
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 3.2e-105 387.1 887 35.7
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 2.7e-104 384.0 741 38.2
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 7.8e-104 382.5 923 34.0
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 1.7e-103 381.3 802 39.3
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 8.7e-103 379.0 804 38.8
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 3.1e-100 370.5 810 37.4
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 2.6e-99 367.5 793 37.1
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 5.8e-99 366.3 803 38.0
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 5.8e-99 366.3 723 39.0
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 6.4e-98 362.8 696 37.8
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.4e-97 361.7 803 37.2
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 1.9e-97 361.3 1009 33.3
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 5.4e-97 359.8 1133 30.0
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 7.1e-97 359.4 245 75.5
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.6e-96 358.2 878 34.6
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 6.0e-96 356.3 807 36.8
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.0e-95 355.5 873 34.8
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 2.8e-93 347.4 696 37.4
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 3.4e-91 340.5 843 33.8
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 3.8e-90 337.0 861 33.3
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 5.4e-89 333.2 949 32.9
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 2.1e-88 331.3 783 35.1
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 7.9e-88 329.3 1006 31.4
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 1.0e-87 328.9 884 32.9
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 3.0e-87 327.4 794 33.9
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 3.9e-87 327.0 799 33.3
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.2e-83 315.5 968 30.7
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 7.6e-83 312.8 668 35.9
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 6.5e-82 309.7 802 34.3
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 3.2e-81 307.4 1021 30.5
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 7.1e-81 306.2 815 31.9
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 1.2e-80 305.4 783 36.1
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 4.6e-80 303.5 816 33.3
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 3.9e-79 300.4 817 35.9
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 3.9e-79 300.4 276 59.1
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 4.8e-77 293.5 805 34.7
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 2.4e-76 291.2 831 32.1
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 1.2e-75 288.9 809 31.6
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 2.0e-75 288.1 814 34.2
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 2.5e-73 281.2 850 31.1
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 7.1e-73 279.6 833 32.1
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 1.6e-72 278.5 951 29.7
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 3.0e-71 274.2 835 31.1
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 2.2e-69 268.1 923 31.2
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 3.7e-69 267.3 771 35.7
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 1.1e-68 265.8 838 30.9
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 1.8e-68 265.0 779 32.3
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 9.0e-68 262.7 842 30.2
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 1.2e-67 262.3 843 30.0
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 2.9e-66 257.7 228 63.2
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 6.5e-66 256.5 812 30.8
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 3.6e-64 250.8 937 28.6
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 7.9e-64 249.6 777 31.3
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 2.8e-61 241.1 532 36.1
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 3.7e-61 240.7 329 45.9
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 7.9e-56 223.0 1022 27.2
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 1.4e-55 222.2 837 29.3
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 2.6e-54 218.0 794 29.3
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 5.7e-54 216.9 894 27.3
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 7.4e-54 216.5 791 28.1
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.1e-52 212.6 806 27.5
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 7.0e-52 209.9 242 50.8
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 4.5e-51 207.2 366 39.1
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.2e-50 204.9 513 34.7
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 8.5e-50 203.0 515 35.0
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.5e-49 202.2 208 54.8
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 1.9e-49 201.8 798 28.1
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 3.2e-49 201.1 862 26.9
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 6.1e-48 196.8 801 28.0
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 4.4e-46 190.7 377 37.4
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 7.5e-46 189.9 795 26.5
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 9.7e-46 189.5 940 25.4
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 6.3e-45 186.8 367 37.1
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 2.0e-43 181.8 175 56.0
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 2.2e-42 178.3 298 40.3
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 1.5e-41 175.6 883 24.7
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 1.5e-41 175.6 883 24.7
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 2.5e-41 174.9 855 25.3
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 4.2e-41 174.1 853 25.0
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 4.2e-41 174.1 853 25.0
Lj4P42T20 Lonicera japonica HOM05D005945 ORTHO05D006749 6.1e-40 170.2 388 37.6
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.0e-39 169.5 967 25.1
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 1.4e-39 169.1 874 25.5
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 2.2e-37 161.8 328 36.3
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 1.4e-36 159.1 367 35.7
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 9.1e-36 156.4 262 40.8
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.2e-35 156.0 252 41.3
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 6.5e-34 150.2 245 39.6
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 6.1e-32 143.7 945 24.6
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 6.1e-32 143.7 391 33.0
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 2.3e-31 141.7 221 40.7
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 1.2e-30 139.4 836 24.3
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 2.6e-30 138.3 347 32.9
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 1.8e-28 132.1 259 36.7
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 2.8e-24 118.2 164 43.9
Sc18g0006320 Simmondsia chinensis HOM05D005945 ORTHO05D006749 8.9e-23 113.2 378 28.6
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 9.2e-20 103.2 155 43.9
Potri.002G262601 Populus trichocarpa HOM05D005945 ORTHO05D006749 3.6e-16 91.3 125 45.6
Gohir.A03G078400 Gossypium hirsutum HOM05D005945 ORTHO05D006749 6.8e-15 87.0 350 29.4
Sabra02G0199400 Salix brachista HOM05D005945 ORTHO05D006749 4.9e-13 80.9 85 49.4
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 2.7e-11 75.1 258 30.2
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 3.5e-11 74.7 134 34.3
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 6.6e-10 70.5 131 32.8
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 1.1e-09 69.7 131 34.4
Lalb_Chr19g0125061 Lupinus albus HOM05D005945 ORTHO05D006749 1.9e-09 68.9 545 25.7
THA.LOC104803300 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 2.1e-08 65.5 317 27.8
Mapoly0005s0138 Marchantia polymorpha HOM05D036654 ORTHO05D006749 1.1e-07 63.2 240 25.4
CBR_g25863 Chara braunii HOM05D005945 ORTHO05D006749 5.2e-07 60.8 159 31.4
FvH4_4g12980 Fragaria vesca HOM05D007138 ORTHO05D009148 1.2e-06 59.7 132 35.6
FAN12G4162 Fragaria x ananassa HOM05D007138 ORTHO05D009148 1.2e-06 59.7 132 35.6
Pp3c7_23790 Physcomitrium patens HOM05D036654 ORTHO05D050357 2.0e-06 58.9 213 28.6
FAN07G0102 Fragaria x ananassa HOM05D007138 ORTHO05D009148 2.6e-06 58.5 132 34.8
Thecc.04G192200 Theobroma cacao HOM05D007138 ORTHO05D009148 5.8e-06 57.4 110 37.3
MBI11_g07400_MAGBIO Magnolia biondii HOM05D007138 ORTHO05D009148 7.5e-06 57.0 157 30.6
CDE02G0146 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 9.8e-06 56.6 775 23.4


User provided reference genes

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