Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1779.6 891 100.0
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1432.9 876 83.7
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1426.4 879 81.8
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1422.9 895 80.4
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1417.9 897 81.5
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1414.8 899 81.2
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1414.4 889 82.0
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1409.0 899 80.3
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1408.7 884 80.9
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1405.6 898 80.1
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1404.4 892 80.2
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1401.3 879 81.6
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1400.2 898 80.0
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1399.8 813 88.2
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1399.8 898 79.8
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1396.7 884 80.7
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1395.2 898 79.5
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1394.8 896 79.8
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1394.0 892 79.0
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1394.0 900 79.4
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1393.6 898 79.5
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1393.3 899 79.2
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1392.5 889 79.6
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1386.3 881 80.9
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1386.3 881 80.8
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1386.3 881 80.8
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1384.8 897 79.4
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1384.4 891 80.2
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1381.7 892 78.9
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1377.8 897 78.8
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1375.9 897 79.3
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1375.5 897 79.4
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1375.1 887 78.6
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1373.2 895 78.3
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1372.5 884 79.6
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1371.7 885 79.1
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1370.9 897 79.2
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1368.6 898 77.8
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1368.2 859 81.3
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1367.8 892 78.6
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1364.4 910 77.5
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1364.4 897 78.1
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1363.6 897 78.4
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1363.2 867 79.9
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1362.4 842 81.5
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1355.9 879 78.6
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1355.5 893 78.7
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1352.8 879 78.5
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1352.4 867 79.8
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1352.0 873 78.6
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 874 78.4
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1347.0 870 79.4
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1347.0 898 77.7
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 874 78.3
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1345.1 875 79.0
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 898 77.1
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 879 78.3
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1344.3 934 75.1
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1340.5 890 77.1
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1338.2 844 80.0
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1336.2 874 78.0
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1334.7 893 77.9
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 862 78.9
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1334.3 879 77.8
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1332.4 873 78.5
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1331.6 867 78.1
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 873 77.7
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 867 78.3
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1327.8 884 76.7
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1326.2 878 76.7
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1320.4 910 72.0
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1320.1 880 76.7
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1319.3 852 79.6
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1318.1 866 76.6
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1313.5 871 76.1
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1312.7 879 76.2
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1311.6 873 76.7
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 848 79.2
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1310.0 848 79.7
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1309.7 898 76.2
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1308.9 924 74.6
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1305.8 860 77.0
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1303.9 866 76.7
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1301.6 864 77.2
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1300.4 905 75.1
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 867 76.7
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1293.1 877 75.5
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 871 75.1
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1288.9 887 75.4
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 879 75.7
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1285.0 890 75.5
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1285.0 866 75.9
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 869 76.3
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1284.6 869 76.3
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1283.1 886 75.1
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1282.7 876 74.7
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1282.3 883 74.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1281.9 838 77.7
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 875 75.7
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1280.0 856 76.4
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1279.2 866 75.6
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1278.1 860 76.9
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1276.9 850 76.5
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1273.8 852 77.1
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1272.3 913 73.6
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1271.5 879 73.9
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1270.0 930 70.9
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1265.4 878 74.3
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1265.4 878 74.3
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1265.4 878 74.3
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1265.4 878 74.3
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1263.4 850 76.8
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1262.3 857 74.8
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1261.5 858 74.9
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1257.3 860 76.0
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1257.3 846 76.1
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1256.9 865 75.0
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1255.4 860 75.8
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1252.3 877 74.0
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1250.0 849 74.3
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1248.8 812 79.3
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1234.6 855 75.2
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1233.0 873 74.1
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1232.2 877 69.2
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1230.3 851 75.1
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1229.9 897 72.6
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1224.5 858 72.4
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1221.1 851 73.9
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1217.6 867 73.0
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1208.4 718 83.6
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1204.9 870 72.5
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1193.7 861 71.2
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1179.5 931 67.5
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1171.4 789 76.0
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1164.4 869 72.2
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1164.4 855 69.6
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1146.3 798 72.6
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1140.6 844 70.0
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1131.3 844 69.2
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1131.3 729 80.4
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1110.1 849 67.7
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1079.3 867 68.3
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 5.1e-301 1037.7 630 80.8
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.1e-284 983.4 881 63.2
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 4.4e-276 954.9 657 69.3
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 3.5e-265 918.7 552 84.2
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 6.3e-259 897.9 550 80.7
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 6.5e-256 887.9 622 71.2
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.3e-192 676.8 740 54.5
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 6.3e-150 535.8 361 75.6
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 2.9e-147 526.9 492 56.3
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 3.6e-145 520.0 361 79.5
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 4.9e-110 403.3 313 71.2
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 4.6e-100 370.2 396 54.5
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 1.5e-98 365.2 306 63.7
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.9e-94 350.9 581 47.3
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.8e-59 235.3 156 76.9
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 9.7e-58 229.6 152 72.4
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 2.5e-45 188.3 163 58.3
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 5.3e-40 170.6 129 67.4
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 8.5e-38 163.3 518 29.0
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.6e-31 142.5 461 27.8
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 7.7e-31 140.2 76 86.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.1e-29 136.3 458 27.1
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 1.4e-27 129.4 68 91.2
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.8e-27 129.0 431 28.1
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.6e-26 125.2 473 27.9
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.2e-25 122.1 96 66.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.5e-21 109.4 74 68.9
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 4.9e-17 94.4 266 27.8
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 7.0e-16 90.5 220 31.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 1.7e-14 85.9 83 55.4
CBR_g38920 Chara braunii HOM05D003945 ORTHO05D004625 1.0e-11 76.6 138 35.5
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 1.8e-08 65.9 227 27.8
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-08 65.1 70 45.7
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 7.8e-07 60.5 38 76.3


User provided reference genes

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