Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 6.5e-107 391.0 230 100.0
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.7e-51 206.8 217 63.1
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 7.3e-50 201.4 221 67.9
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 3.6e-49 199.1 209 58.4
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 6.2e-49 198.4 223 64.1
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 1.8e-48 196.8 219 55.3
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 4.0e-48 195.7 213 61.5
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 8.9e-48 194.5 215 60.9
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 8.9e-48 194.5 215 60.9
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 8.9e-48 194.5 231 55.4
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.4e-45 187.2 207 66.7
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 4.1e-45 185.7 206 56.3
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 4.1e-45 185.7 212 57.1
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 5.4e-45 185.3 218 54.6
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.3e-43 179.9 192 57.8
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.3e-43 179.9 193 58.0
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 8.6e-43 177.9 218 57.3
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.1e-42 177.6 212 59.9
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 3.3e-42 176.0 203 60.6
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 9.5e-42 174.5 221 54.8
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.2e-41 174.1 219 55.3
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 2.1e-41 173.3 208 59.1
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 3.6e-41 172.6 218 52.3
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 3.6e-41 172.6 155 61.3
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.1e-40 171.0 200 62.0
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 2.3e-40 169.9 232 54.7
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 4.0e-40 169.1 236 51.7
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 6.8e-40 168.3 211 57.3
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 6.8e-40 168.3 198 53.5
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 6.8e-40 168.3 223 50.2
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 3.4e-39 166.0 207 50.7
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 4.4e-39 165.6 199 55.3
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 7.5e-39 164.9 219 50.2
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 9.9e-39 164.5 213 50.2
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 2.2e-38 163.3 219 50.2
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 4.9e-38 162.2 207 51.2
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.1e-37 161.0 173 57.2
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.9e-37 160.2 175 62.3
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 2.4e-37 159.8 173 57.2
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 4.1e-37 159.1 155 61.9
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 9.2e-37 157.9 173 57.8
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.0e-36 155.2 202 52.0
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.0e-36 155.2 202 52.0
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.3e-35 153.3 202 52.0
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 2.3e-35 153.3 218 56.4
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.9e-35 152.5 182 49.5
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 2.5e-34 149.8 186 59.1
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 2.8e-33 146.4 179 49.7
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 2.8e-33 146.4 221 48.4
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.6e-33 146.0 179 49.7
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 4.7e-33 145.6 198 50.5
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.2e-33 145.2 156 56.4
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.8e-32 143.7 182 48.9
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 3.1e-32 142.9 234 50.0
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 5.2e-32 142.1 241 54.4
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 6.8e-32 141.7 148 55.4
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 6.8e-32 141.7 202 49.0
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 1.2e-31 141.0 154 57.8
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.2e-31 141.0 156 60.9
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.5e-31 140.6 156 60.3
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 2.6e-31 139.8 215 47.0
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 3.4e-31 139.4 155 52.9
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 7.6e-31 138.3 215 47.0
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 7.6e-31 138.3 185 47.6
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 9.9e-31 137.9 235 44.3
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 1.7e-30 137.1 146 53.4
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 2.9e-30 136.3 167 53.3
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.1e-29 134.4 136 53.7
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 1.4e-29 134.0 176 55.1
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 2.4e-29 133.3 208 47.1
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 3.2e-29 132.9 172 48.8
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 5.4e-29 132.1 234 46.6
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 2.7e-28 129.8 189 49.2
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 3.5e-28 129.4 199 47.7
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 4.6e-28 129.0 140 62.1
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 6.0e-28 128.6 180 50.0
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 6.0e-28 128.6 211 48.3
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 7.8e-28 128.3 166 47.6
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 1.7e-27 127.1 191 47.6
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 5.1e-27 125.6 179 50.3
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 5.1e-27 125.6 159 49.7
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 6.6e-27 125.2 144 62.5
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 6.6e-27 125.2 209 52.6
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 8.7e-27 124.8 208 49.0
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.1e-26 124.4 164 50.0
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 1.5e-26 124.0 130 63.1
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 1.9e-26 123.6 176 45.5
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.9e-26 123.6 80 81.2
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 2.5e-26 123.2 177 57.1
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 4.3e-26 122.5 135 55.6
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 5.6e-26 122.1 202 43.1
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 5.6e-26 122.1 189 50.3
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 5.6e-26 122.1 207 57.0
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 9.6e-26 121.3 150 49.3
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 1.3e-25 120.9 175 46.3
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 1.3e-25 120.9 181 52.5
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 1.6e-25 120.6 188 48.9
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 2.1e-25 120.2 176 44.3
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 3.6e-25 119.4 121 66.9
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 8.1e-25 118.2 180 45.6
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 8.1e-25 118.2 180 45.6
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 8.1e-25 118.2 231 42.4
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.8e-24 117.1 180 48.9
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 2.4e-24 116.7 181 43.6
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 3.1e-24 116.3 169 45.0
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 1.2e-23 114.4 127 51.2
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.5e-23 114.0 163 46.0
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 2.0e-23 113.6 223 45.7
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 2.6e-23 113.2 154 46.8
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.4e-23 112.5 157 49.7
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 5.8e-23 112.1 180 43.3
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 2.9e-22 109.8 181 44.2
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.8e-22 109.4 244 36.9
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 8.4e-22 108.2 160 48.8
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 8.4e-22 108.2 180 43.9
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 3.2e-21 106.3 210 46.2
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 3.2e-21 106.3 159 50.9
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 5.4e-21 105.5 129 52.7
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 7.1e-21 105.1 160 43.8
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 7.1e-21 105.1 85 65.9
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.2e-20 104.4 191 46.1
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 4.6e-20 102.4 159 45.3
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 6.0e-20 102.1 182 44.0
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 6.0e-20 102.1 182 44.0
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 7.8e-20 101.7 240 34.6
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 3.0e-19 99.8 87 66.7
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.6e-19 98.6 156 45.5
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.1e-18 97.8 246 36.6
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 1.9e-18 97.1 140 41.4
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.5e-18 96.7 178 40.4
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 1.3e-17 94.4 132 43.2
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 1.6e-17 94.0 98 60.2
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.8e-17 92.4 159 42.1
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 4.8e-17 92.4 159 42.1
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 8.1e-17 91.7 204 46.6
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.0e-16 89.4 191 37.2
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 5.3e-16 89.0 161 40.4
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 1.2e-15 87.8 176 38.6
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 5.8e-15 85.5 91 53.8
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.3e-14 84.3 154 41.6
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 5.1e-11 72.4 76 51.3
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 8.7e-11 71.6 85 51.8
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.5e-10 70.9 156 41.7
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 3.3e-10 69.7 77 54.5
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 4.3e-10 69.3 70 57.1
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 4.3e-10 69.3 70 57.1
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 2.8e-09 66.6 67 55.2
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.2e-09 65.5 61 60.7
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 3.1e-08 63.2 163 35.0
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 6.9e-08 62.0 98 42.9
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 1.7e-06 57.4 79 50.6


User provided reference genes

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