Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39280 Davidia involucrata HOM05D000050 ORTHO05D180757 6.9e-36 153.3 70 100.0
MSTRG.15377 Avicennia marina HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
MSTRG.3437 Avicennia marina HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
CANSAT25G0775 Cannabis sativa HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
CANSAT25G3423 Cannabis sativa HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
ClCG02G008000 Citrullus lanatus HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Ciclev10026671m.g Citrus clementina HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
MELO3C024782.2 Cucumis melo HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
CsaV3_2G035660 Cucumis sativus L. HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
DCAR_025749 Daucus carota HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Migut.C00541 Erythranthe guttata HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
FvH4_1g16390 Fragaria vesca HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
FvH4_2g33980 Fragaria vesca HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
FAN20G1473 Fragaria x ananassa HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
FAN23G1733 Fragaria x ananassa HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
FAN26G2448 Fragaria x ananassa HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
FAN28G1058 Fragaria x ananassa HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Lj2g0009954 Lotus japonicus HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Manes.12G106700 Manihot esculenta HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Manes.13G120200 Manihot esculenta HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Oeu049894.1 Olea europaea HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Peaxi162Scf00160g00030 Petunia axillaris HOM05D000050 ORTHO05D002487 2.3e-07 58.5 31 80.6
Potri.005G141100 Populus trichocarpa HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
RcHm_v2.0_Chr2g0106261 Rosa chinensis HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
RcHm_v2.0_Chr6g0308431 Rosa chinensis HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Sabra05G0110300 Salix brachista HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Sed0015990 Sechium edule HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Sed0026504 Sechium edule HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Hund16226 Selenicereus undatus HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
THA.LOC104801429 Tarenaya hassleriana HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
TWI53G0075 Tripterygium wilfordii HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
TWI56G1239 Tripterygium wilfordii HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
TWI73G0503 Tripterygium wilfordii HOM05D000050 ORTHO05D002487 2.3e-07 58.5 25 100.0
Atru.chr3.278 Acer truncatum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Actinidia03800 Actinidia chinensis HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Actinidia12030 Actinidia chinensis HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
ATR0724G097 Amborella trichopoda HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
MSTRG.23727 Avicennia marina HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
CAN.G1030.32 Capsicum annuum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
CAN.G370.33 Capsicum annuum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
CAN.G82.16 Capsicum annuum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Cpa.g.sc85.103 Carica papaya HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Cfa004046 Carpinus fangiana HOM05D000050 ORTHO05D002487 5.2e-07 57.4 31 77.4
CiPaw.01G015000 Carya illinoinensis HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Cc10_g04760 Coffea canephora HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Haze_15366 Corylus avellana HOM05D000050 ORTHO05D002487 5.2e-07 57.4 31 77.4
Dinv26848 Davidia involucrata HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Duzib187G0862 Durio zibethinus HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Duzib264G0426 Durio zibethinus HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Migut.H00410 Erythranthe guttata HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Gohir.A11G195700 Gossypium hirsutum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Gohir.D11G201700 Gossypium hirsutum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Hma1.2p1_0017F.1_g011750 Hydrangea macrophylla HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
MD08G1095700 Malus domestica HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
MD15G1078500 Malus domestica HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
MD15G1286800 Malus domestica HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Mapoly0163s0010 Marchantia polymorpha HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Nn1g04763 Nelumbo nucifera HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Nn5g30371 Nelumbo nucifera HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Nitab4.5_0000929g0080 Nicotiana tabacum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Nitab4.5_0001603g0040 Nicotiana tabacum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Nitab4.5_0003962g0020 Nicotiana tabacum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Nitab4.5_0007370g0020 Nicotiana tabacum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Nitab4.5_0008728g0020 Nicotiana tabacum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Oeu014812.1 Olea europaea HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Oeu017447.1 Olea europaea HOM05D000050 ORTHO05D030298 5.2e-07 57.4 25 96.0
Os03g0123100 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Os10g0536000 Oryza sativa ssp. japonica HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Peaxi162Scf00403g00031 Petunia axillaris HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Peaxi162Scf00549g00223 Petunia axillaris HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Pp3c24_19480 Physcomitrium patens HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Pp3c8_18320 Physcomitrium patens HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Prupe.6G231300 Prunus persica HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
QL02p004176 Quercus lobata HOM05D000050 ORTHO05D030298 5.2e-07 57.4 25 96.0
QL06p040516 Quercus lobata HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Rhsim08G0098800 Rhododendron simsii HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Rhsim10G0113700 Rhododendron simsii HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
SMO197G0054 Selaginella moellendorffii HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Sc02g0007410 Simmondsia chinensis HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Solyc02g093110.3 Solanum lycopersicum HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Sopen02g037680 Solanum pennellii HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
PGSC0003DMG400005594 Solanum tuberosum HOM05D000050 ORTHO05D030298 5.2e-07 57.4 25 96.0
Thecc.01G061000 Theobroma cacao HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
TAR376G1042 Trochodendron aralioides HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
TAR625G0778 Trochodendron aralioides HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
TAR628G1103 Trochodendron aralioides HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
HPP92_005018 Vanilla planifolia HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
GSVIVG01009448001 Vitis vinifera HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Zm00001eb001680 Zea mays HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Zm00001eb022000 Zea mays HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Zm00001eb393660 Zea mays HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Zm00001eb403740 Zea mays HOM05D000050 ORTHO05D002487 5.2e-07 57.4 25 96.0
Atru.chr13.738 Acer truncatum HOM05D000050 ORTHO05D002487 6.7e-07 57.0 25 96.0
Ah.02g126030 Amaranthus hybridus HOM05D000050 ORTHO05D002487 6.7e-07 57.0 25 96.0
EL10Ac6g15708 Beta vulgaris HOM05D000050 ORTHO05D002487 6.7e-07 57.0 25 96.0
CAN.G1194.17 Capsicum annuum HOM05D000050 ORTHO05D002487 6.7e-07 57.0 25 96.0
AUR62003918 Chenopodium quinoa HOM05D000050 ORTHO05D002487 6.7e-07 57.0 25 96.0
Glyma.05G091100 Glycine max HOM05D000050 ORTHO05D002487 6.7e-07 57.0 25 96.0
Glyma.17G169700 Glycine max HOM05D000050 ORTHO05D002487 6.7e-07 57.0 25 96.0
Phvul.003G241600 Phaseolus vulgaris HOM05D000050 ORTHO05D002487 6.7e-07 57.0 25 96.0
PGR083G0865 Punica granatum HOM05D000050 ORTHO05D002487 6.7e-07 57.0 25 96.0
SalBow5G5683 Salvia bowleyana HOM05D000050 ORTHO05D002487 6.7e-07 57.0 31 77.4
Duzib147G1639 Durio zibethinus HOM05D000050 ORTHO05D002487 1.2e-06 56.2 25 92.0
Lj4C154G7 Lonicera japonica HOM05D000050 ORTHO05D002487 1.2e-06 56.2 25 92.0
PGSC0003DMG400018161 Solanum tuberosum HOM05D000050 ORTHO05D002487 1.2e-06 56.2 25 92.0
Cpa.g.sc21.165 Carica papaya HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
CiPaw.02G006700 Carya illinoinensis HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
Cc07_g06240 Coffea canephora HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
ECA232G4140 Erigeron canadensis HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
ECA232G4200 Erigeron canadensis HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
HanXRQChr02g0058631 Helianthus annuus HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
HanXRQChr12g0381831 Helianthus annuus HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
HanXRQChr15g0473631 Helianthus annuus HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
Lsat_1_v5_gn_3_90141 Lactuca sativa HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
Lsat_1_v5_gn_4_164560 Lactuca sativa HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
PSO541G5248 Papaver somniferum HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
PSO675G2903 Papaver somniferum HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
Solyc04g078620.3 Solanum lycopersicum HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
Sopen04g032200 Solanum pennellii HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
PGSC0003DMG400015405 Solanum tuberosum HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 96.0
SGA_v2.0_scaffold143G35796 Striga asiatica HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
SGA_v2.0_scaffold15G07345 Striga asiatica HOM05D000050 ORTHO05D002487 1.5e-06 55.8 25 92.0
CDE02G0799 Ceratophyllum demersum HOM05D000086 ORTHO05D002487 2.0e-06 55.5 25 92.0
CDE04G0902 Ceratophyllum demersum HOM05D000050 ORTHO05D002487 2.0e-06 55.5 25 92.0
CDE07G0404 Ceratophyllum demersum HOM05D000050 ORTHO05D002487 2.0e-06 55.5 25 92.0
Aa31LG10G12580 Aethionema arabicum HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
AL5G39530 Arabidopsis lyrata HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
AT3G57870 Arabidopsis thaliana HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BcaB02g07571 Brassica carinata HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BcaB02g08292 Brassica carinata HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BcaC02g09965 Brassica carinata HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BcaC07g40161 Brassica carinata HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BcaC07g40333 Brassica carinata HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BcaC08g44873 Brassica carinata HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
A04p02890 Brassica napus HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
A07p23700 Brassica napus HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
A09p50730 Brassica napus HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
C04p34530 Brassica napus HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
C06p24910 Brassica napus HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
C08p33440 Brassica napus HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BolC4t25013H Brassica oleracea HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BolC6t37643H Brassica oleracea HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BolC8t50942H Brassica oleracea HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BraA07t30022Z Brassica rapa HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
BraA09t40520Z Brassica rapa HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
Carub.0005s2472 Capsella rubella HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
Thhalv10006282m.g Eutrema salsugineum HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
Nitab4.5_0005129g0010 Nicotiana tabacum HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
PSO170G4150 Papaver somniferum HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
PSO210G3164 Papaver somniferum HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
Sp5g04850 Schrenkiella parvula HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
PGSC0003DMG400006481 Solanum tuberosum HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
PGSC0003DMG400007950 Solanum tuberosum HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 92.0
TWI09G0480 Tripterygium wilfordii HOM05D000050 ORTHO05D002487 2.6e-06 55.1 25 96.0
Potri.014G024801 Populus trichocarpa HOM05D000050 ORTHO05D002487 3.3e-06 54.7 23 100.0
Potri.014G024950 Populus trichocarpa HOM05D000050 ORTHO05D002487 3.3e-06 54.7 23 100.0
Sabra14G0016900 Salix brachista HOM05D000050 ORTHO05D002487 3.3e-06 54.7 23 100.0
Solyc03g112720.4 Solanum lycopersicum HOM05D000050 ORTHO05D002487 3.3e-06 54.7 25 88.0
Sopen03g031800 Solanum pennellii HOM05D000050 ORTHO05D002487 3.3e-06 54.7 25 88.0
VMungo0251G1388 Vigna mungo HOM05D000050 ORTHO05D002487 3.3e-06 54.7 25 92.0
AagrBONN_evm.TU.Sc2ySwM_117.952 Anthoceros agrestis HOM05D000050 ORTHO05D002487 4.4e-06 54.3 25 88.0
Haze_18054 Corylus avellana HOM05D000050 ORTHO05D002487 5.7e-06 53.9 23 100.0
Haze_18056 Corylus avellana HOM05D000050 ORTHO05D002487 5.7e-06 53.9 23 100.0
Solyc03g044260.3 Solanum lycopersicum HOM05D000050 ORTHO05D002487 5.7e-06 53.9 25 88.0
Sopen03g008310 Solanum pennellii HOM05D000050 ORTHO05D002487 5.7e-06 53.9 25 88.0
THA.LOC104802422 Tarenaya hassleriana HOM05D000050 ORTHO05D002487 5.7e-06 53.9 25 88.0
THA.LOC104819590 Tarenaya hassleriana HOM05D000050 ORTHO05D002487 5.7e-06 53.9 25 88.0
Aa31LG3G14070 Aethionema arabicum HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
Aqoxy6G01238 Aquilegia oxysepala HOM05D000050 ORTHO05D002487 7.5e-06 53.5 23 95.7
BcaB02g08117 Brassica carinata HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
BcaC02g10290 Brassica carinata HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
A04p00670 Brassica napus HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
C04p30750 Brassica napus HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
BolC4t24594H Brassica oleracea HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
BraA04t15786Z Brassica rapa HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
CARHR168180 Cardamine hirsuta HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
Migut.C00542 Erythranthe guttata HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
Thhalv10006281m.g Eutrema salsugineum HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
HanXRQChr16g0529791 Helianthus annuus HOM05D000050 ORTHO05D002487 7.5e-06 53.5 24 91.7
Potri.002G123600 Populus trichocarpa HOM05D000050 ORTHO05D002487 7.5e-06 53.5 23 95.7
Sabra02G0097100 Salix brachista HOM05D000050 ORTHO05D002487 7.5e-06 53.5 23 95.7
Sp5g01130 Schrenkiella parvula HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
Thecc.08G002600 Theobroma cacao HOM05D000050 ORTHO05D002487 7.5e-06 53.5 25 88.0
Solyc12g088680.2 Solanum lycopersicum HOM05D000050 ORTHO05D002487 9.7e-06 53.1 25 88.0
Sopen12g030580 Solanum pennellii HOM05D000050 ORTHO05D002487 9.7e-06 53.1 25 88.0
GSVIVG01022074001 Vitis vinifera HOM05D000050 ORTHO05D002487 9.7e-06 53.1 25 88.0


User provided reference genes

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