Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 2.5e-62 241.9 118 100.0
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 2.1e-40 169.1 118 73.7
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.0e-31 138.7 118 62.7
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 6.2e-29 131.0 118 60.2
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 6.2e-29 131.0 118 58.5
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 8.1e-29 130.6 118 58.5
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 1.7e-26 122.9 118 59.3
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 8.4e-26 120.6 112 60.7
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.4e-25 119.0 117 53.8
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 5.4e-25 117.9 110 59.1
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 9.3e-25 117.1 119 58.8
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.0e-24 114.4 117 56.4
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 2.3e-23 112.5 111 55.0
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 1.1e-22 110.2 118 51.7
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 3.3e-22 108.6 115 53.9
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 4.3e-22 108.2 115 52.2
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.3e-21 106.7 120 51.7
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 2.8e-21 105.5 130 47.7
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 2.8e-21 105.5 120 52.5
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 6.2e-21 104.4 115 50.4
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 1.1e-20 103.6 116 52.6
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 2.4e-20 102.4 109 53.2
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 2.4e-20 102.4 117 48.7
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 5.3e-20 101.3 110 50.0
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 9.0e-20 100.5 120 50.0
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.4e-19 98.6 115 48.7
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 3.4e-19 98.6 138 47.1
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 4.5e-19 98.2 124 53.2
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 7.6e-19 97.4 121 49.6
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 2.9e-18 95.5 119 47.9
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 1.1e-17 93.6 117 47.0
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 1.1e-17 93.6 120 47.5
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 1.4e-17 93.2 108 50.0
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 5.4e-17 91.3 115 47.8
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 5.4e-17 91.3 115 47.8
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.1e-16 89.4 118 45.8
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.7e-16 89.0 79 57.0
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 2.7e-16 89.0 85 57.6
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 3.5e-16 88.6 135 44.4
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.0e-16 87.8 118 47.5
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 1.3e-15 86.7 115 47.0
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 3.0e-15 85.5 116 49.1
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 6.7e-15 84.3 115 47.0
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.7e-15 84.3 79 54.4
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.1e-14 83.6 118 47.5
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 1.9e-14 82.8 123 44.7
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 2.5e-14 82.4 74 56.8
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 3.3e-14 82.0 117 48.7
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.4e-14 80.9 119 42.0
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 7.4e-14 80.9 119 42.0
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 9.6e-14 80.5 112 48.2
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 1.6e-13 79.7 109 46.8
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.6e-13 79.7 109 46.8
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.6e-13 79.7 109 46.8
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 1.6e-13 79.7 119 45.4
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 1.6e-13 79.7 113 45.1
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.6e-13 79.7 135 42.2
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 1.6e-13 79.7 119 42.0
Actinidia08253 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.1e-13 79.3 78 59.0
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 2.1e-13 79.3 115 47.0
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 2.1e-13 79.3 130 41.5
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 2.8e-13 79.0 112 47.3
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 3.7e-13 78.6 112 47.3
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 3.7e-13 78.6 114 40.4
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 4.8e-13 78.2 112 45.5
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 4.8e-13 78.2 115 47.0
DCAR_008852 Daucus carota HOM05D004288 ORTHO05D004997 6.2e-13 77.8 93 51.6
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 6.2e-13 77.8 117 43.6
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 8.1e-13 77.4 126 46.8
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 1.1e-12 77.0 93 45.2
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 1.1e-12 77.0 109 45.9
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 1.1e-12 77.0 119 42.0
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 1.1e-12 77.0 109 44.0
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 2.4e-12 75.9 85 49.4
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 3.1e-12 75.5 76 57.9
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 3.1e-12 75.5 125 43.2
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 4.0e-12 75.1 74 54.1
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 6.9e-12 74.3 116 42.2
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 9.0e-12 73.9 74 52.7
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.2e-11 73.6 111 46.8
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.5e-11 73.2 122 41.0
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.6e-11 72.4 72 54.2
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 4.5e-11 71.6 104 46.2
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 5.8e-11 71.2 87 46.0
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 9.9e-11 70.5 118 43.2
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 9.9e-11 70.5 113 41.6
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 3.8e-10 68.6 130 38.5
HanXRQChr01g0027971 Helianthus annuus HOM05D004288 ORTHO05D004997 3.8e-10 68.6 64 54.7
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 3.8e-10 68.6 115 39.1
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 6.4e-10 67.8 112 42.0
Lsat_1_v5_gn_4_130821 Lactuca sativa HOM05D004288 ORTHO05D004997 1.1e-09 67.0 122 44.3
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 1.1e-09 67.0 103 40.8
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 1.4e-09 66.6 118 41.5
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 1.4e-09 66.6 122 41.0
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 2.4e-09 65.9 126 40.5
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 2.4e-09 65.9 102 41.2
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 3.2e-09 65.5 117 37.6
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 5.5e-09 64.7 59 55.9
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 5.5e-09 64.7 110 38.2
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 5.5e-09 64.7 115 40.9
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 7.1e-09 64.3 102 44.1
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 9.3e-09 63.9 80 46.2
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 1.6e-08 63.2 79 50.6
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 1.6e-08 63.2 50 58.0
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 2.7e-08 62.4 111 41.4
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 2.7e-08 62.4 113 38.1
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 4.6e-08 61.6 123 40.7
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 4.6e-08 61.6 42 64.3
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 4.6e-08 61.6 120 39.2
TAR381G1169 Trochodendron aralioides HOM05D004288 ORTHO05D004997 4.6e-08 61.6 85 45.9
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.3e-07 60.1 105 41.9
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 2.3e-07 59.3 75 49.3
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 3.9e-07 58.5 116 33.6
Aqoxy5G00895 Aquilegia oxysepala HOM05D003189 ORTHO05D003449 5.1e-07 58.2 50 56.0
Nn5g30537 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.1e-06 57.0 152 32.9
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 1.9e-06 56.2 61 52.5
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 2.5e-06 55.8 41 63.4
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 3.3e-06 55.5 62 51.6
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 3.3e-06 55.5 99 38.4
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 3.3e-06 55.5 111 33.3
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 7.4e-06 54.3 53 54.7


User provided reference genes

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