Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39215 Davidia involucrata HOM05D002412 ORTHO05D002516 6.5e-72 274.2 168 100.0
Dinv44944 Davidia involucrata HOM05D002412 ORTHO05D002516 1.1e-47 193.7 209 56.0
CSS0009619 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.6e-30 136.7 190 59.5
Manes.18G047500 Manihot esculenta HOM05D002412 ORTHO05D002516 3.6e-30 135.6 176 51.1
Actinidia10209 Actinidia chinensis HOM05D002412 ORTHO05D002516 1.7e-27 126.7 182 46.2
Rhsim06G0063100 Rhododendron simsii HOM05D002412 ORTHO05D002516 2.8e-27 125.9 179 47.5
Actinidia19303 Actinidia chinensis HOM05D002412 ORTHO05D002516 4.8e-27 125.2 173 45.1
TAR628G0919 Trochodendron aralioides HOM05D002412 ORTHO05D002516 7.0e-26 121.3 173 45.1
Potri.002G117600 Populus trichocarpa HOM05D002412 ORTHO05D002516 2.9e-24 115.9 176 46.0
CiPaw.07G173700 Carya illinoinensis HOM05D002412 ORTHO05D002516 8.5e-24 114.4 182 53.8
TAR381G0181 Trochodendron aralioides HOM05D002412 ORTHO05D002516 8.5e-24 114.4 180 43.3
Prupe.1G421400 Prunus persica HOM05D002412 ORTHO05D002516 2.5e-23 112.8 178 40.4
Potri.014G015000 Populus trichocarpa HOM05D002412 ORTHO05D002516 4.2e-23 112.1 174 46.6
TAR376G0005 Trochodendron aralioides HOM05D002412 ORTHO05D002516 5.5e-23 111.7 197 46.2
Thecc.08G086800 Theobroma cacao HOM05D002412 ORTHO05D002516 7.2e-23 111.3 189 42.3
GSVIVG01009322001 Vitis vinifera HOM05D002412 ORTHO05D002516 9.4e-23 110.9 86 66.3
TWI12G0333 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 4.7e-22 108.6 185 40.5
MD15G1067500 Malus domestica HOM05D002412 ORTHO05D002516 1.0e-21 107.5 187 41.2
Gohir.D05G214100 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.0e-21 105.5 175 42.9
Duzib041G0516 Durio zibethinus HOM05D002412 ORTHO05D002516 5.2e-21 105.1 192 41.7
GSVIVG01037808001 Vitis vinifera HOM05D002412 ORTHO05D002516 5.2e-21 105.1 179 41.3
Oeu020549.2 Olea europaea HOM05D002412 ORTHO05D002516 1.5e-20 103.6 165 40.0
Sabra02G0092100 Salix brachista HOM05D002412 ORTHO05D002516 1.5e-20 103.6 163 45.4
QL12p038263 Quercus lobata HOM05D002412 ORTHO05D002516 2.6e-20 102.8 181 43.6
MD08G1080400 Malus domestica HOM05D002412 ORTHO05D002516 3.4e-20 102.4 184 40.2
Oeu036975.1 Olea europaea HOM05D002412 ORTHO05D002516 4.4e-20 102.1 174 41.4
Ciclev10002703m.g Citrus clementina HOM05D002412 ORTHO05D002516 7.5e-20 101.3 169 41.4
Gohir.A02G080700 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.3e-19 100.5 192 41.7
PGSC0003DMG401011556 Solanum tuberosum HOM05D002412 ORTHO05D002516 1.7e-19 100.1 183 38.3
Duzib052G0953 Durio zibethinus HOM05D002412 ORTHO05D002516 2.2e-19 99.8 189 38.1
Gohir.A05G210800 Gossypium hirsutum HOM05D002412 ORTHO05D002516 2.2e-19 99.8 175 41.1
Gohir.D02G088500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.9e-19 98.6 192 41.7
Gorai.005G099200 Gossypium raimondii HOM05D002412 ORTHO05D002516 8.3e-19 97.8 192 41.7
TWI12G0423 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 1.8e-18 96.7 189 45.0
Oeu048571.1 Olea europaea HOM05D002412 ORTHO05D002516 3.1e-18 95.9 171 38.0
Peaxi162Scf00081g00269 Petunia axillaris HOM05D002412 ORTHO05D002516 3.1e-18 95.9 186 37.6
Sopen12g030300 Solanum pennellii HOM05D002412 ORTHO05D002516 3.1e-18 95.9 183 37.2
RcHm_v2.0_Chr6g0252561 Rosa chinensis HOM05D002412 ORTHO05D002516 5.4e-18 95.1 203 36.0
CiPaw.08G050800 Carya illinoinensis HOM05D002412 ORTHO05D002516 7.0e-18 94.7 196 42.3
QL93p0154_0003 Quercus lobata HOM05D002412 ORTHO05D002516 1.2e-17 94.0 193 40.9
Solyc12g088300.2 Solanum lycopersicum HOM05D002412 ORTHO05D002516 1.6e-17 93.6 183 36.6
Cfa004671 Carpinus fangiana HOM05D002412 ORTHO05D002516 2.0e-17 93.2 177 35.6
Aqoxy6G02560 Aquilegia oxysepala HOM05D002412 ORTHO05D002516 2.7e-17 92.8 189 37.0
Lj4C72T9 Lonicera japonica HOM05D002412 ORTHO05D002516 4.5e-17 92.0 85 60.0
Haze_10271 Corylus avellana HOM05D002412 ORTHO05D002516 7.7e-17 91.3 197 34.0
Nitab4.5_0003725g0030 Nicotiana tabacum HOM05D002412 ORTHO05D002516 2.3e-16 89.7 178 37.6
Hma1.2p1_1059F.1_g253110 Hydrangea macrophylla HOM05D002412 ORTHO05D002516 2.9e-16 89.4 172 36.6
Sopen04g031330 Solanum pennellii HOM05D002412 ORTHO05D002516 2.9e-16 89.4 198 35.4
Lj9A329T24 Lonicera japonica HOM05D002412 ORTHO05D002516 3.8e-16 89.0 163 37.4
Nitab4.5_0000497g0080 Nicotiana tabacum HOM05D002412 ORTHO05D002516 3.8e-16 89.0 188 36.2
Lj9A332T16 Lonicera japonica HOM05D002412 ORTHO05D002516 5.0e-16 88.6 163 37.4
Solyc04g077690.3 Solanum lycopersicum HOM05D002412 ORTHO05D002516 8.6e-16 87.8 194 35.1
Phvul.002G051300 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 1.5e-15 87.0 167 37.1
CSS0002290 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 1.9e-15 86.7 182 36.8
Nitab4.5_0003953g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.9e-15 86.7 196 35.7
Ciclev10029343m.g Citrus clementina HOM05D002412 ORTHO05D002516 2.5e-15 86.3 182 38.5
FAN15G1641 Fragaria x ananassa HOM05D002412 ORTHO05D002516 2.5e-15 86.3 185 46.5
Prupe.8G147000 Prunus persica HOM05D002412 ORTHO05D002516 2.5e-15 86.3 195 37.9
QL11p029982 Quercus lobata HOM05D002412 ORTHO05D002516 2.5e-15 86.3 188 36.7
Gohir.A12G019300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 3.3e-15 85.9 181 37.0
Gohir.D12G019500 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.3e-15 85.5 181 37.0
Gorai.008G019800 Gossypium raimondii HOM05D002412 ORTHO05D002516 4.3e-15 85.5 181 37.0
Lj1g0009349 Lotus japonicus HOM05D002412 ORTHO05D002516 1.2e-14 84.0 177 37.9
Nn5g30629 Nelumbo nucifera HOM05D002412 ORTHO05D002516 1.2e-14 84.0 181 35.4
PSO675G0250 Papaver somniferum HOM05D002412 ORTHO05D002516 1.6e-14 83.6 76 59.2
Actinidia00360 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.1e-14 83.2 191 33.5
CAN.G606.66 Capsicum annuum HOM05D002412 ORTHO05D002516 2.8e-14 82.8 174 33.3
MELO3C016826.2 Cucumis melo HOM05D002412 ORTHO05D002516 2.8e-14 82.8 165 38.2
Glyma.04G046600 Glycine max HOM05D002412 ORTHO05D002516 2.8e-14 82.8 180 39.4
Actinidia04390 Actinidia chinensis HOM05D002412 ORTHO05D002516 4.7e-14 82.0 163 36.8
CsaV3_4G035130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 4.7e-14 82.0 173 37.6
Thecc.02G118800 Theobroma cacao HOM05D002412 ORTHO05D002516 4.7e-14 82.0 178 34.3
Duzib132G0526 Durio zibethinus HOM05D002412 ORTHO05D002516 6.1e-14 81.6 168 51.8
Peaxi162Scf00016g03017 Petunia axillaris HOM05D002412 ORTHO05D002516 6.1e-14 81.6 66 56.1
CiPaw.05G019200 Carya illinoinensis HOM05D002412 ORTHO05D002516 8.0e-14 81.3 74 54.1
FvH4_2g03590 Fragaria vesca HOM05D002412 ORTHO05D002516 8.0e-14 81.3 189 37.0
FAN24G3376 Fragaria x ananassa HOM05D002412 ORTHO05D002516 8.0e-14 81.3 188 37.2
Sabra09G0066300 Salix brachista HOM05D002412 ORTHO05D002516 8.0e-14 81.3 66 62.1
TWI56G0446 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 8.0e-14 81.3 185 37.3
DCAR_001741 Daucus carota HOM05D002412 ORTHO05D002516 1.4e-13 80.5 168 38.7
Nitab4.5_0002040g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.4e-13 80.5 179 33.5
FAN20G0615 Fragaria x ananassa HOM05D002412 ORTHO05D002516 1.8e-13 80.1 185 46.5
Glyma.01G242100 Glycine max HOM05D002412 ORTHO05D002516 1.8e-13 80.1 163 37.4
PSO541G5000 Papaver somniferum HOM05D002412 ORTHO05D002516 1.8e-13 80.1 193 47.7
Actinidia34355 Actinidia chinensis HOM05D002412 ORTHO05D002516 2.3e-13 79.7 171 35.7
DCAR_020053 Daucus carota HOM05D002412 ORTHO05D002516 2.3e-13 79.7 172 37.2
Sed0022600 Sechium edule HOM05D002412 ORTHO05D002516 3.0e-13 79.3 174 37.9
DCAR_009875 Daucus carota HOM05D002412 ORTHO05D002516 5.2e-13 78.6 170 35.9
Nitab4.5_0007781g0010 Nicotiana tabacum HOM05D002412 ORTHO05D002516 6.8e-13 78.2 171 33.3
Phvul.001G028800 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.8e-13 78.2 171 36.3
Psat4g227320 Pisum sativum HOM05D002412 ORTHO05D002516 8.9e-13 77.8 155 34.8
Dinv42242 Davidia involucrata HOM05D002412 ORTHO05D002516 1.2e-12 77.4 176 35.2
Glyma.06G047300 Glycine max HOM05D002412 ORTHO05D002516 1.2e-12 77.4 187 36.9
THA.LOC104807210 Tarenaya hassleriana HOM05D002412 ORTHO05D002516 1.2e-12 77.4 180 33.3
VMungo0647G1017 Vigna mungo HOM05D002412 ORTHO05D002516 2.0e-12 76.6 171 35.7
Nn6g34504 Nelumbo nucifera HOM05D002412 ORTHO05D002516 2.6e-12 76.3 168 33.3
Oeu037285.1 Olea europaea HOM05D002412 ORTHO05D002516 3.4e-12 75.9 157 32.5
Phvul.009G072700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 3.4e-12 75.9 185 38.4
VMungo1215G2231 Vigna mungo HOM05D002412 ORTHO05D002516 3.4e-12 75.9 167 34.7
Oeu037507.3 Olea europaea HOM05D006761 ORTHO05D002516 4.4e-12 75.5 140 37.9
MD10G1108100 Malus domestica HOM05D002412 ORTHO05D002516 7.5e-12 74.7 198 42.9
CsaV3_4G000130 Cucumis sativus L. HOM05D002412 ORTHO05D002516 9.8e-12 74.3 183 35.0
Peaxi162Scf00160g00517 Petunia axillaris HOM05D002412 ORTHO05D002516 9.8e-12 74.3 176 35.8
ClCG10G010090 Citrullus lanatus HOM05D002412 ORTHO05D002516 1.3e-11 73.9 204 33.8
MELO3C018019.2 Cucumis melo HOM05D002412 ORTHO05D002516 1.7e-11 73.6 183 35.5
Dinv15818 Davidia involucrata HOM05D002412 ORTHO05D002516 1.7e-11 73.6 147 36.1
Cpa.g.sc106.37 Carica papaya HOM05D002412 ORTHO05D002516 2.2e-11 73.2 68 52.9
Lalb_Chr11g0062941 Lupinus albus HOM05D002412 ORTHO05D002516 2.2e-11 73.2 167 34.7
CiPaw.06G164900 Carya illinoinensis HOM05D002412 ORTHO05D002516 2.9e-11 72.8 186 31.7
Duzib093G1945 Durio zibethinus HOM05D002412 ORTHO05D002516 2.9e-11 72.8 130 38.5
Glyma.10G256100 Glycine max HOM05D002412 ORTHO05D002516 2.9e-11 72.8 177 33.9
Glyma.11G002100 Glycine max HOM05D002412 ORTHO05D002516 2.9e-11 72.8 164 35.4
TWI59G0380 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 2.9e-11 72.8 187 33.7
HanXRQChr03g0065031 Helianthus annuus HOM05D002412 ORTHO05D002516 3.7e-11 72.4 152 34.9
TPR.G33675 Trifolium pratense HOM05D002412 ORTHO05D002516 3.7e-11 72.4 174 33.9
Phvul.007G046700 Phaseolus vulgaris HOM05D002412 ORTHO05D002516 6.4e-11 71.6 164 32.3
Sed0010289 Sechium edule HOM05D002412 ORTHO05D002516 6.4e-11 71.6 172 36.0
DCAR_012823 Daucus carota HOM05D002412 ORTHO05D002516 8.3e-11 71.2 202 29.2
MBI16_g37755_MAGBIO Magnolia biondii HOM05D002412 ORTHO05D002516 8.3e-11 71.2 86 53.5
MD05G1102500 Malus domestica HOM05D002412 ORTHO05D002516 8.3e-11 71.2 195 40.0
Solyc01g106910.4 Solanum lycopersicum HOM05D002412 ORTHO05D002516 8.3e-11 71.2 168 33.3
Glyma.20G135500 Glycine max HOM05D002412 ORTHO05D002516 1.1e-10 70.9 176 33.5
Lalb_Chr02g0144931 Lupinus albus HOM05D002412 ORTHO05D002516 1.1e-10 70.9 172 31.4
Nitab4.5_0001458g0070 Nicotiana tabacum HOM05D002412 ORTHO05D002516 1.1e-10 70.9 181 33.1
VMungo0720G0862 Vigna mungo HOM05D002412 ORTHO05D002516 1.1e-10 70.9 168 32.7
MSTRG.22217 Avicennia marina HOM05D002412 ORTHO05D002516 1.4e-10 70.5 189 32.3
MSTRG.24380 Avicennia marina HOM05D002412 ORTHO05D002516 1.4e-10 70.5 166 35.5
FAN20G2155 Fragaria x ananassa HOM05D002412 ORTHO05D002516 1.4e-10 70.5 190 31.6
TPR.G8322 Trifolium pratense HOM05D002412 ORTHO05D002516 1.4e-10 70.5 163 33.7
Glyma.14G089039 Glycine max HOM05D002412 ORTHO05D002516 2.4e-10 69.7 179 35.8
Glyma.17G234000 Glycine max HOM05D002412 ORTHO05D002516 2.4e-10 69.7 171 33.9
Gorai.013G051000 Gossypium raimondii HOM05D002412 ORTHO05D002516 2.4e-10 69.7 186 39.2
Gohir.A13G047300 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.1e-10 68.9 186 44.1
TWI14G1286 Tripterygium wilfordii HOM05D002412 ORTHO05D002516 4.1e-10 68.9 73 53.4
Potri.009G086600 Populus trichocarpa HOM05D002412 ORTHO05D002516 9.2e-10 67.8 62 61.3
Sopen01g049190 Solanum pennellii HOM05D002412 ORTHO05D002516 9.2e-10 67.8 164 33.5
Gohir.D13G044350 Gossypium hirsutum HOM05D002412 ORTHO05D002516 1.2e-09 67.4 187 38.5
PSO017G0848 Papaver somniferum HOM05D002412 ORTHO05D002516 1.6e-09 67.0 174 35.1
CSS0003834 Camellia sinensis var. sinensis HOM05D002412 ORTHO05D002516 2.0e-09 66.6 182 32.4
Potri.001G292100 Populus trichocarpa HOM05D002412 ORTHO05D002516 2.0e-09 66.6 80 48.8
FAN15G1065 Fragaria x ananassa HOM05D002412 ORTHO05D002516 3.5e-09 65.9 213 29.6
vmacro19537 Vaccinium macrocarpon HOM05D002412 ORTHO05D002516 5.9e-09 65.1 176 33.5
Sabra16G0182100 Salix brachista HOM05D002412 ORTHO05D002516 7.8e-09 64.7 204 29.9
CANSAT25G0992 Cannabis sativa HOM05D002412 ORTHO05D002516 1.0e-08 64.3 84 50.0
CANSAT25G1695 Cannabis sativa HOM05D002412 ORTHO05D002516 1.0e-08 64.3 84 50.0
CARHR241890 Cardamine hirsuta HOM05D002412 ORTHO05D002516 1.0e-08 64.3 164 35.4
Gorai.009G220800 Gossypium raimondii HOM05D002412 ORTHO05D002516 1.0e-08 64.3 159 32.1
Lalb_Chr21g0308011 Lupinus albus HOM05D002412 ORTHO05D002516 1.3e-08 63.9 173 32.4
Medtr3g103260 Medicago truncatula HOM05D002412 ORTHO05D002516 1.3e-08 63.9 89 50.6
Ca_11030_v3 Cicer arietinum L. HOM05D002412 ORTHO05D002516 1.7e-08 63.5 209 31.1
Lsat_1_v5_gn_7_84920 Lactuca sativa HOM05D002412 ORTHO05D002516 2.3e-08 63.2 64 46.9
ECA236G2487 Erigeron canadensis HOM05D002412 ORTHO05D002516 3.0e-08 62.8 170 31.8
Lj5g0023078 Lotus japonicus HOM05D002412 ORTHO05D002516 3.9e-08 62.4 186 34.4
PGSC0003DMG400025836 Solanum tuberosum HOM05D002412 ORTHO05D002516 3.9e-08 62.4 175 29.7
Manes.10G084600 Manihot esculenta HOM05D002412 ORTHO05D002516 8.6e-08 61.2 71 49.3
Sed0020406 Sechium edule HOM05D002412 ORTHO05D002516 8.6e-08 61.2 176 33.0
ClCG05G020680 Citrullus lanatus HOM05D002412 ORTHO05D002516 1.5e-07 60.5 166 34.9
DCAR_029176 Daucus carota HOM05D002412 ORTHO05D002516 1.5e-07 60.5 135 30.4
RhsimUnG0041400 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.5e-07 60.5 179 32.4
RhsimUnG0123400 Rhododendron simsii HOM05D002412 ORTHO05D002516 1.5e-07 60.5 179 32.4
CAN.G975.16 Capsicum annuum HOM05D002412 ORTHO05D002516 1.9e-07 60.1 160 29.4
Medtr1g106080 Medicago truncatula HOM05D002412 ORTHO05D002516 1.9e-07 60.1 177 32.2
Psat0ss7070g0040 Pisum sativum HOM05D002412 ORTHO05D002516 3.3e-07 59.3 174 35.1
PGSC0003DMG400010615 Solanum tuberosum HOM05D002412 ORTHO05D002516 3.3e-07 59.3 183 30.6
Eucgr.I01046 Eucalyptus grandis HOM05D002412 ORTHO05D002516 4.3e-07 58.9 194 30.9
SalBow2G3451 Salvia bowleyana HOM05D002412 ORTHO05D002516 4.3e-07 58.9 170 39.4
BraA01t00437Z Brassica rapa HOM05D002412 ORTHO05D002516 5.6e-07 58.5 164 34.1
MSTRG.20224 Avicennia marina HOM05D002412 ORTHO05D002516 7.3e-07 58.2 200 27.0
Nitab4.5_0001185g0040 Nicotiana tabacum HOM05D002412 ORTHO05D002516 9.5e-07 57.8 180 43.3
TPR.G21149 Trifolium pratense HOM05D002412 ORTHO05D002516 9.5e-07 57.8 173 30.6
A01p04520 Brassica napus HOM05D002412 ORTHO05D002516 1.2e-06 57.4 163 31.9
PSO170G3219 Papaver somniferum HOM05D002412 ORTHO05D002516 1.2e-06 57.4 180 33.9
Atru.chr13.848 Acer truncatum HOM05D002412 ORTHO05D002516 1.6e-06 57.0 137 40.1
Lj5g0012685 Lotus japonicus HOM05D002412 ORTHO05D002516 1.6e-06 57.0 174 30.5
RcHm_v2.0_Chr6g0309821 Rosa chinensis HOM05D002412 ORTHO05D002516 2.1e-06 56.6 162 34.0
CANSAT25G2021 Cannabis sativa HOM05D002412 ORTHO05D002516 3.6e-06 55.8 184 34.2
Sed0002993 Sechium edule HOM05D002412 ORTHO05D002516 3.6e-06 55.8 64 54.7
Gohir.D02G203237 Gossypium hirsutum HOM05D002412 ORTHO05D002516 4.7e-06 55.5 167 47.3
MSTRG.16674 Avicennia marina HOM05D002412 ORTHO05D002516 6.2e-06 55.1 75 42.7
FAN24G0690 Fragaria x ananassa HOM05D002412 ORTHO05D002516 6.2e-06 55.1 84 41.7
Sc02g0007970 Simmondsia chinensis HOM05D002412 ORTHO05D002516 8.0e-06 54.7 174 30.5


User provided reference genes

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