Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 2.1e-135 485.7 245 100.0
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 1.1e-96 357.1 200 87.5
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.2e-89 332.8 202 80.2
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 3.2e-88 328.9 187 83.4
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 1.2e-87 327.0 189 82.5
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 1.6e-87 326.6 202 80.7
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 2.7e-87 325.9 189 82.5
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 2.7e-87 325.9 193 79.8
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.5e-85 320.1 190 83.7
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 2.0e-85 319.7 188 83.5
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 3.3e-85 318.9 205 78.5
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 8.2e-84 314.3 194 78.4
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 3.4e-82 308.9 188 80.3
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 4.2e-80 302.0 191 78.5
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.6e-79 300.1 191 77.5
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.3e-78 296.2 191 77.0
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 2.3e-78 296.2 194 78.4
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 3.0e-78 295.8 207 74.4
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 3.0e-78 295.8 201 75.1
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 5.2e-78 295.0 188 76.1
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 1.3e-76 290.4 180 80.6
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 3.7e-76 288.9 192 74.5
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.1e-75 287.3 199 74.4
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 1.1e-75 287.3 187 76.5
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 1.4e-75 287.0 206 71.4
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.4e-75 287.0 213 70.4
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.2e-74 283.9 192 72.4
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 1.2e-74 283.9 192 72.4
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 3.5e-74 282.3 187 77.0
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 1.3e-73 280.4 188 76.1
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 1.3e-73 280.4 246 63.8
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.8e-73 278.9 192 71.4
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 5.0e-73 278.5 190 74.2
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 5.0e-73 278.5 202 70.8
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.5e-72 276.9 190 72.6
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.5e-72 276.9 191 72.3
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 3.2e-72 275.8 204 71.1
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 1.2e-71 273.9 170 74.7
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 1.6e-71 273.5 174 72.4
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 3.6e-71 272.3 195 70.3
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 3.6e-71 272.3 197 69.0
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 3.6e-71 272.3 176 74.4
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 4.7e-71 271.9 195 72.8
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 6.1e-71 271.6 205 68.3
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 3.0e-70 269.2 192 72.9
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 4.0e-70 268.9 197 68.0
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 5.2e-70 268.5 178 75.3
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 6.7e-70 268.1 178 77.0
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 6.7e-70 268.1 225 65.8
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 1.5e-69 266.9 187 73.8
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 2.0e-69 266.5 173 72.3
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 2.6e-69 266.2 191 68.6
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 1.3e-68 263.8 182 71.4
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-68 263.8 197 66.5
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-68 263.8 200 66.5
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-68 263.8 200 66.5
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 1.3e-68 263.8 191 67.5
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 1.7e-68 263.5 194 66.5
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 2.8e-68 262.7 217 65.4
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 3.7e-68 262.3 194 66.5
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 4.8e-68 261.9 200 66.0
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 6.3e-68 261.5 173 74.0
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 1.1e-67 260.8 171 72.5
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 2.4e-67 259.6 195 67.2
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 5.3e-67 258.5 173 73.4
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.2e-66 257.3 195 67.7
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 1.3e-65 253.8 180 69.4
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 5.0e-65 251.9 192 69.3
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 6.5e-65 251.5 181 70.7
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 1.5e-64 250.4 192 68.8
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 5.5e-64 248.4 191 69.1
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 7.2e-64 248.1 192 68.2
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 1.2e-63 247.3 188 65.4
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 1.6e-63 246.9 190 64.7
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 2.7e-63 246.1 171 68.4
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 2.7e-63 246.1 192 67.7
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 3.6e-63 245.7 191 63.4
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 4.7e-63 245.4 190 66.8
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 6.1e-63 245.0 191 62.8
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 1.8e-62 243.4 176 70.5
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 5.2e-62 241.9 174 67.2
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 5.2e-62 241.9 191 64.4
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 2.0e-61 240.0 191 61.8
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 2.0e-61 240.0 203 63.5
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 8.3e-60 234.6 173 65.3
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 2.4e-59 233.0 196 63.3
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 7.0e-59 231.5 193 61.1
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 9.1e-59 231.1 181 68.0
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 1.6e-58 230.3 193 60.6
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.6e-58 230.3 175 63.4
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.3e-57 227.3 193 63.7
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 2.9e-57 226.1 196 60.7
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 2.9e-57 226.1 173 61.3
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 8.6e-57 224.6 194 60.3
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.1e-56 224.2 191 63.9
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 9.5e-56 221.1 192 58.3
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.6e-55 219.2 178 64.0
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 6.1e-55 218.4 181 61.3
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 8.0e-55 218.0 181 61.3
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 8.0e-55 218.0 181 61.3
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 1.0e-54 217.6 186 59.1
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 1.4e-54 217.2 177 61.6
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 3.0e-54 216.1 174 64.4
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 3.0e-54 216.1 200 58.0
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 4.0e-54 215.7 200 60.5
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 5.2e-54 215.3 188 60.1
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 8.8e-54 214.5 189 59.3
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 4.9e-52 208.8 204 55.4
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 6.3e-52 208.4 173 63.0
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.4e-51 206.5 174 59.8
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 7.0e-51 204.9 174 58.6
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 3.5e-50 202.6 208 54.8
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 5.9e-50 201.8 188 55.3
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 2.3e-49 199.9 177 59.3
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 2.3e-49 199.9 166 61.4
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 2.9e-49 199.5 203 52.2
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 3.8e-49 199.1 197 57.9
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 8.6e-49 198.0 177 59.9
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 4.3e-48 195.7 174 58.6
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.6e-47 193.7 130 73.8
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 3.6e-47 192.6 177 55.9
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 4.7e-47 192.2 206 51.0
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.8e-46 190.3 126 73.0
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 1.2e-42 177.6 190 47.9
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 3.9e-41 172.6 133 67.7
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 6.6e-41 171.8 193 50.8
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 1.5e-40 170.6 103 80.6
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 9.5e-40 167.9 123 69.9
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 2.0e-37 160.2 189 48.1
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 4.9e-36 155.6 87 80.5
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 5.4e-35 152.1 152 56.6
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 3.5e-34 149.4 90 77.8
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 5.6e-32 142.1 190 44.2
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.7e-28 130.6 131 51.9
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 2.1e-26 123.6 114 61.4
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 1.7e-25 120.6 176 40.3
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 8.9e-22 108.2 249 33.7
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.6e-21 106.7 81 64.2
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 3.4e-21 106.3 93 63.4
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 6.0e-18 95.5 63 71.4
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 1.7e-17 94.0 97 59.8
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.5e-16 90.9 100 53.0
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.2e-15 87.8 119 48.7
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 9.9e-13 78.2 107 48.6
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 7.3e-08 62.0 200 30.5
AagrBONN_evm.TU.Sc2ySwM_117.2582 Anthoceros agrestis HOM05D004812 ORTHO05D005721 4.0e-06 56.2 138 37.7


User provided reference genes

Program Settings