Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.7e-55 219.2 114 100.0
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.9e-35 152.5 108 76.9
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.2e-34 149.8 108 78.7
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 4.0e-33 144.8 98 80.6
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 6.4e-31 137.5 109 72.5
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.5e-27 126.3 112 64.3
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.5e-27 126.3 111 67.6
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.3e-27 125.2 112 64.3
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.6e-27 124.4 112 64.3
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.6e-26 121.7 112 63.4
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 8.1e-26 120.6 95 72.6
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 8.1e-26 120.6 112 64.3
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.1e-25 120.2 108 64.8
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.8e-25 119.4 105 65.7
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.8e-25 119.4 99 71.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.1e-25 118.6 103 67.0
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 3.1e-25 118.6 113 65.5
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 6.9e-25 117.5 112 66.1
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.0e-24 115.9 104 65.4
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.6e-24 115.5 112 64.3
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.6e-24 115.5 114 59.6
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.8e-24 114.4 112 61.6
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.3e-23 113.2 112 63.4
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.3e-23 113.2 103 62.1
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.7e-23 112.8 114 58.8
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.9e-23 112.1 115 59.1
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.9e-23 111.3 108 64.8
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.1e-22 110.2 112 60.7
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.1e-22 110.2 110 59.1
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.9e-22 109.4 103 60.2
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.2e-22 108.2 114 57.0
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 7.1e-22 107.5 107 63.6
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 9.3e-22 107.1 102 60.8
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.2e-21 106.7 107 62.6
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 2.1e-21 105.9 102 62.7
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 2.1e-21 105.9 105 61.0
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 2.1e-21 105.9 97 64.9
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.0e-21 104.4 105 60.0
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 6.0e-21 104.4 100 60.0
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 7.8e-21 104.0 106 61.3
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 1.7e-20 102.8 102 62.7
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 3.0e-20 102.1 100 59.0
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 3.9e-20 101.7 100 62.0
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.1e-19 100.1 100 59.0
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.5e-19 99.8 100 58.0
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.5e-19 99.8 113 60.2
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 9.6e-19 97.1 97 59.8
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.3e-18 96.7 112 57.1
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.6e-18 96.3 108 55.6
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.1e-17 93.6 87 65.5
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.8e-17 92.8 111 53.2
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.1e-17 92.0 103 56.3
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 5.3e-17 91.3 103 56.3
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 6.9e-17 90.9 81 59.3
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 9.0e-17 90.5 88 59.1
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.2e-16 90.1 91 59.3
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 4.5e-16 88.2 95 54.7
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.3e-15 86.7 101 55.4
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.4e-14 83.2 100 53.0
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 1.4e-14 83.2 99 56.6
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 1.9e-14 82.8 100 51.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 4.2e-14 81.6 98 54.1
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 5.4e-14 81.3 113 49.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.2e-13 80.1 101 53.5
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.6e-13 79.7 97 53.6
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 1.8e-12 76.3 98 56.1
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.8e-12 76.3 98 56.1
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.8e-12 76.3 102 52.9
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.3e-12 75.9 61 68.9
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.0e-12 75.5 102 50.0
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 3.9e-12 75.1 85 56.5
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.9e-12 75.1 80 57.5
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 3.9e-12 75.1 109 48.6
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 6.7e-12 74.3 97 51.5
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 6.7e-12 74.3 98 49.0
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 8.7e-12 73.9 95 47.4
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.5e-11 72.4 105 48.6
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.3e-11 72.0 96 49.0
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 3.3e-11 72.0 103 46.6
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 4.3e-11 71.6 96 49.0
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.3e-11 71.6 96 49.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 4.3e-11 71.6 96 49.0
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.3e-11 71.6 84 54.8
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 7.4e-11 70.9 83 55.4
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 9.6e-11 70.5 84 54.8
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.6e-11 70.5 96 50.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.6e-10 69.7 108 43.5
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.1e-10 69.3 80 51.2
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.1e-10 69.3 75 53.3
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-09 67.0 96 45.8
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.4e-09 66.6 87 51.7
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.8e-09 66.2 79 54.4
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.8e-09 66.2 101 44.6
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.8e-09 66.2 105 46.7
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 3.1e-09 65.5 96 44.8
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 3.1e-09 65.5 96 44.8
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 3.1e-09 65.5 96 44.8
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 4.0e-09 65.1 71 56.3
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 4.0e-09 65.1 71 56.3
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 4.0e-09 65.1 71 56.3
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 5.3e-09 64.7 87 52.9
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 6.9e-09 64.3 67 55.2
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 6.9e-09 64.3 95 45.3
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-08 63.5 98 45.9
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.2e-08 63.5 67 58.2
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-08 63.2 94 44.7
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.5e-08 63.2 94 44.7
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 2.0e-08 62.8 54 57.4
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.6e-08 62.4 81 51.9
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 2.6e-08 62.4 82 50.0
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 3.4e-08 62.0 96 43.8
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 4.5e-08 61.6 94 43.6
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 5.8e-08 61.2 81 51.9
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 7.6e-08 60.8 77 46.8
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 9.9e-08 60.5 113 38.9
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 9.9e-08 60.5 80 52.5
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 9.9e-08 60.5 94 42.6
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.3e-07 60.1 94 44.7
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.3e-07 60.1 84 47.6
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.3e-07 60.1 74 50.0
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 1.7e-07 59.7 84 47.6
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.7e-07 59.7 94 44.7
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.7e-07 59.7 109 39.4
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 2.2e-07 59.3 45 71.1
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.2e-07 59.3 66 53.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 90 43.3
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 2.9e-07 58.9 99 43.4
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 2.9e-07 58.9 91 47.3
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 2.9e-07 58.9 84 46.4
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 3.8e-07 58.5 106 40.6
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.9e-07 58.2 76 46.1
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 4.9e-07 58.2 74 50.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.9e-07 58.2 46 60.9
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 4.9e-07 58.2 94 44.7
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 6.4e-07 57.8 90 43.3
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 6.4e-07 57.8 81 43.2
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 8.4e-07 57.4 94 39.4
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 8.4e-07 57.4 94 39.4
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 8.4e-07 57.4 62 56.5
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 90 42.2
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 1.1e-06 57.0 82 50.0
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-06 56.6 94 38.3
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-06 56.6 94 38.3
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.4e-06 56.6 94 38.3
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 1.4e-06 56.6 91 48.4
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.9e-06 56.2 102 42.2
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.9e-06 56.2 67 50.7
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.9e-06 56.2 97 42.3
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.9e-06 56.2 106 38.7
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 2.4e-06 55.8 100 45.0
Lsat_1_v5_gn_3_5041 Lactuca sativa HOM05D003683 ORTHO05D004143 2.4e-06 55.8 86 46.5
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 4.2e-06 55.1 82 47.6
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 5.5e-06 54.7 71 47.9
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 7.1e-06 54.3 97 40.2


User provided reference genes

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