Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 2.6e-49 198.4 98 100.0
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 4.7e-22 107.8 55 90.9
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 1.0e-21 106.7 61 83.6
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 1.0e-21 106.7 53 96.2
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 1.0e-21 106.7 55 89.1
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.8e-21 105.9 55 90.9
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 2.3e-21 105.5 54 92.6
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 3.0e-21 105.1 55 90.9
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 3.0e-21 105.1 55 90.9
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 5.2e-21 104.4 54 90.7
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 6.7e-21 104.0 54 88.9
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 1.1e-20 103.2 51 94.1
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.1e-20 103.2 58 84.5
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 1.1e-20 103.2 53 90.6
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 1.1e-20 103.2 51 94.1
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 1.1e-20 103.2 53 90.6
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 1.5e-20 102.8 53 88.7
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 1.5e-20 102.8 55 85.5
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 1.5e-20 102.8 51 94.1
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 2.0e-20 102.4 51 92.2
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 2.0e-20 102.4 51 92.2
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 2.0e-20 102.4 51 92.2
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.0e-20 102.4 51 92.2
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 2.6e-20 102.1 58 82.8
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.6e-20 102.1 51 90.2
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 4.4e-20 101.3 53 88.7
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 4.4e-20 101.3 53 88.7
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 4.4e-20 101.3 58 81.0
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 4.4e-20 101.3 58 81.0
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 5.7e-20 100.9 53 86.8
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 5.7e-20 100.9 51 92.2
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 5.7e-20 100.9 49 95.9
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 5.7e-20 100.9 51 92.2
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 5.7e-20 100.9 53 86.8
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 7.4e-20 100.5 51 88.2
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 7.4e-20 100.5 51 92.2
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 9.7e-20 100.1 51 94.1
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 9.7e-20 100.1 53 84.9
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 9.7e-20 100.1 51 88.2
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 9.7e-20 100.1 51 92.2
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 9.7e-20 100.1 53 86.8
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 1.3e-19 99.8 51 92.2
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 1.3e-19 99.8 51 92.2
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 1.3e-19 99.8 51 90.2
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 1.3e-19 99.8 78 64.1
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 1.3e-19 99.8 53 84.9
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 1.3e-19 99.8 51 90.2
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 1.3e-19 99.8 53 88.7
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.7e-19 99.4 51 92.2
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.7e-19 99.4 53 86.8
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 2.2e-19 99.0 49 93.9
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 2.8e-19 98.6 55 85.5
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 2.8e-19 98.6 55 85.5
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 3.7e-19 98.2 55 83.6
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 3.7e-19 98.2 53 84.9
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 4.8e-19 97.8 51 88.2
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.8e-19 97.8 58 79.3
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 4.8e-19 97.8 53 86.8
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 6.3e-19 97.4 50 92.0
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 6.3e-19 97.4 50 92.0
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 6.3e-19 97.4 50 92.0
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 6.3e-19 97.4 53 86.8
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 8.2e-19 97.1 59 74.6
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 8.2e-19 97.1 51 86.3
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.4e-18 96.3 58 77.6
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.4e-18 96.3 51 84.3
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 1.4e-18 96.3 51 90.2
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.8e-18 95.9 51 86.3
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 1.8e-18 95.9 53 83.0
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.4e-18 95.5 53 83.0
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 5.3e-18 94.4 51 88.2
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 7.0e-18 94.0 51 86.3
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 1.2e-17 93.2 51 86.3
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 1.2e-17 93.2 51 86.3
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 1.2e-17 93.2 51 86.3
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 1.2e-17 93.2 51 86.3
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 1.2e-17 93.2 51 86.3
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 1.2e-17 93.2 51 86.3
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 1.2e-17 93.2 51 86.3
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 1.6e-17 92.8 51 86.3
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 3.5e-17 91.7 50 86.0
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 4.5e-17 91.3 50 86.0
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 4.5e-17 91.3 50 86.0
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 4.5e-17 91.3 50 86.0
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 5.9e-17 90.9 58 75.9
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 2.5e-15 85.5 51 76.5
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 4.2e-15 84.7 51 72.5
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 9.4e-15 83.6 53 73.6
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 2.3e-13 79.0 41 87.8
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 3.0e-13 78.6 37 97.3
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 8.8e-13 77.0 49 67.3
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 2.8e-11 72.0 36 88.9
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 2.8e-11 72.0 53 66.0
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 5.4e-10 67.8 53 64.2
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 8.5e-08 60.5 42 64.3
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 4.2e-07 58.2 41 63.4
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 4.2e-07 58.2 26 88.5
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 5.5e-07 57.8 24 95.8
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 5.5e-07 57.8 27 85.2
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 7.2e-07 57.4 48 58.3
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 9.4e-07 57.0 40 70.0
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 1.2e-06 56.6 25 92.0
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 1.6e-06 56.2 50 50.0
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 2.7e-06 55.5 27 81.5
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.7e-06 54.7 48 54.2


User provided reference genes

Program Settings