Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39001 Davidia involucrata HOM05D005348 ORTHO05D006635 0.0e+00 1459.5 740 100.0
CSS0016729 Camellia sinensis var. sinensis HOM05D005348 ORTHO05D006635 0.0e+00 1183.7 738 78.5
Actinidia05223 Actinidia chinensis HOM05D005348 ORTHO05D006635 0.0e+00 1180.2 745 78.5
Rhsim07G0093800 Rhododendron simsii HOM05D005348 ORTHO05D006635 0.0e+00 1098.6 889 66.9
Migut.E01288 Erythranthe guttata HOM05D005348 ORTHO05D006635 0.0e+00 1097.0 691 77.3
CAN.G981.21 Capsicum annuum HOM05D005348 ORTHO05D006635 5.1e-312 1073.5 779 68.2
Sopen08g028770 Solanum pennellii HOM05D005348 ORTHO05D006635 5.5e-309 1063.9 781 68.2
GSVIVG01019819001 Vitis vinifera HOM05D005348 ORTHO05D006635 5.4e-304 1047.3 830 65.5
Duzib068G0163 Durio zibethinus HOM05D005348 ORTHO05D006635 2.2e-302 1042.0 702 75.8
vmacro13927 Vaccinium macrocarpon HOM05D005348 ORTHO05D006635 8.5e-302 1040.0 817 65.7
Cc08_g14090 Coffea canephora HOM05D005348 ORTHO05D006635 1.5e-301 1039.3 803 65.5
TAR375G0646 Trochodendron aralioides HOM05D005348 ORTHO05D006635 1.9e-301 1038.9 701 74.2
SGA_v2.0_scaffold144G35970 Striga asiatica HOM05D005348 ORTHO05D006635 2.6e-298 1028.5 628 78.0
QL12p017446 Quercus lobata HOM05D005348 ORTHO05D006635 1.7e-297 1025.8 733 70.9
Thecc.03G272300 Theobroma cacao HOM05D005348 ORTHO05D006635 5.4e-296 1020.8 595 81.0
Manes.02G025740 Manihot esculenta HOM05D005348 ORTHO05D006635 2.0e-295 1018.8 647 76.4
Prupe.5G092400 Prunus persica HOM05D005348 ORTHO05D006635 3.8e-294 1014.6 691 71.9
Gorai.007G022400 Gossypium raimondii HOM05D005348 ORTHO05D006635 1.1e-293 1013.1 685 73.4
Sc05g0000210 Simmondsia chinensis HOM05D005348 ORTHO05D006635 2.3e-291 1005.4 732 69.5
CiPaw.11G140300 Carya illinoinensis HOM05D005348 ORTHO05D006635 4.0e-291 1004.6 776 67.9
Psat2g181800 Pisum sativum HOM05D005348 ORTHO05D006635 1.2e-290 1003.0 739 66.7
Medtr5g010740 Medicago truncatula HOM05D005348 ORTHO05D006635 3.4e-290 1001.5 733 70.7
FvH4_5g28890 Fragaria vesca HOM05D005348 ORTHO05D006635 6.4e-289 997.3 700 70.1
MD04G1066100 Malus domestica HOM05D005348 ORTHO05D006635 1.1e-288 996.5 607 78.6
Aqoxy7G00422 Aquilegia oxysepala HOM05D005348 ORTHO05D006635 4.6e-287 991.1 646 74.8
TPR.G6715 Trifolium pratense HOM05D005348 ORTHO05D006635 1.0e-286 989.9 731 68.1
Phvul.002G154300 Phaseolus vulgaris HOM05D005348 ORTHO05D006635 3.0e-286 988.4 629 75.5
PSO782G2170 Papaver somniferum HOM05D005348 ORTHO05D006635 6.6e-286 987.3 627 75.3
Eucgr.D01915 Eucalyptus grandis HOM05D005348 ORTHO05D006635 4.3e-285 984.6 713 68.4
Lj2g0017844 Lotus japonicus HOM05D005348 ORTHO05D006635 4.3e-285 984.6 698 68.6
CANSAT21G2165 Cannabis sativa HOM05D005348 ORTHO05D006635 9.5e-285 983.4 694 72.9
PGR031G1121 Punica granatum HOM05D005348 ORTHO05D006635 2.8e-284 981.9 695 70.4
DCAR_006756 Daucus carota HOM05D005348 ORTHO05D006635 3.1e-283 978.4 746 69.2
PSO478G3496 Papaver somniferum HOM05D005348 ORTHO05D006635 2.0e-282 975.7 630 74.8
Ciclev10019148m.g Citrus clementina HOM05D005348 ORTHO05D006635 5.4e-280 967.6 680 72.9
ClCG01G003080 Citrullus lanatus HOM05D005348 ORTHO05D006635 1.5e-277 959.5 671 70.3
arahy.Tifrunner.gnm1.ann1.C7APUF Arachis hypogaea HOM05D005348 ORTHO05D006635 1.2e-276 956.4 643 71.9
arahy.Tifrunner.gnm1.ann1.SKE7H3 Arachis hypogaea HOM05D005348 ORTHO05D006635 1.2e-276 956.4 646 71.5
Lsat_1_v5_gn_3_5380 Lactuca sativa HOM05D005348 ORTHO05D006635 3.6e-276 954.9 636 72.3
Carub.0006s3081 Capsella rubella HOM05D005348 ORTHO05D006635 6.8e-275 950.7 633 71.7
ECA240G2378 Erigeron canadensis HOM05D005348 ORTHO05D006635 1.2e-274 949.9 716 68.0
THA.LOC104813014 Tarenaya hassleriana HOM05D005348 ORTHO05D006635 2.2e-273 945.7 608 74.0
TWI15G0275 Tripterygium wilfordii HOM05D005348 ORTHO05D006635 6.4e-273 944.1 622 71.7
CARHR254650 Cardamine hirsuta HOM05D005348 ORTHO05D006635 2.4e-272 942.2 594 74.7
AL6G46320 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 3.2e-272 941.8 588 75.3
Sed0022971 Sechium edule HOM05D005348 ORTHO05D006635 4.1e-272 941.4 653 70.3
SalBow1G6288 Salvia bowleyana HOM05D005348 ORTHO05D006635 2.1e-271 939.1 695 69.4
EL10Ac4g10111 Beta vulgaris HOM05D005348 ORTHO05D006635 2.7e-271 938.7 746 66.0
Sabra01G0082300 Salix brachista HOM05D005348 ORTHO05D006635 4.6e-271 937.9 744 64.1
AL6G46446 Arabidopsis lyrata HOM05D005348 ORTHO05D006635 1.1e-269 933.3 587 75.0
AT4G11720 Arabidopsis thaliana HOM05D005348 ORTHO05D006635 1.1e-269 933.3 587 74.8
Nitab4.5_0002234g0010 Nicotiana tabacum HOM05D005348 ORTHO05D006635 6.8e-267 924.1 774 62.7
RcHm_v2.0_Chr4g0410761 Rosa chinensis HOM05D005348 ORTHO05D006635 1.7e-265 919.5 703 66.6
Lalb_Chr16g0377191 Lupinus albus HOM05D005348 ORTHO05D006635 1.1e-264 916.8 733 64.1
Nn6g34225 Nelumbo nucifera HOM05D005348 ORTHO05D006635 1.1e-264 916.8 926 53.1
BraA09t38310Z Brassica rapa HOM05D005348 ORTHO05D006635 1.2e-263 913.3 608 71.2
SHI23548 Sapria himalayana HOM05D005348 ORTHO05D006635 1.0e-262 910.2 638 69.9
BolC9t56320H Brassica oleracea HOM05D005348 ORTHO05D006635 5.1e-262 907.9 628 69.1
Sp6g05730 Schrenkiella parvula HOM05D005348 ORTHO05D006635 6.6e-262 907.5 589 72.7
Manes.01G066000 Manihot esculenta HOM05D005348 ORTHO05D006635 8.6e-262 907.1 565 76.3
Potri.001G109000 Populus trichocarpa HOM05D005348 ORTHO05D006635 2.0e-258 896.0 527 80.6
Ah.06g194640 Amaranthus hybridus HOM05D005348 ORTHO05D006635 6.4e-257 891.0 589 72.8
A09p27390 Brassica napus HOM05D005348 ORTHO05D006635 2.1e-255 885.9 600 70.5
FAN13G3003 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.3e-254 883.2 737 62.6
C09p34740 Brassica napus HOM05D005348 ORTHO05D006635 1.7e-254 882.9 604 69.9
Aa31LG9G10660 Aethionema arabicum HOM05D005348 ORTHO05D006635 3.1e-251 872.1 585 72.1
BcaB01g01675 Brassica carinata HOM05D005348 ORTHO05D006635 2.6e-250 869.0 638 67.2
Peaxi162Scf00714g00430 Petunia axillaris HOM05D005348 ORTHO05D006635 2.6e-250 869.0 508 83.1
Thhalv10028515m.g Eutrema salsugineum HOM05D005348 ORTHO05D006635 9.9e-250 867.1 525 76.0
BcaB05g23815 Brassica carinata HOM05D005348 ORTHO05D006635 4.9e-249 864.8 584 70.2
Glyma.15G240000 Glycine max HOM05D005348 ORTHO05D006635 4.6e-247 858.2 522 77.6
MELO3C005635.2 Cucumis melo HOM05D005348 ORTHO05D006635 4.3e-245 851.7 544 75.6
Haze_08938 Corylus avellana HOM05D005348 ORTHO05D006635 5.6e-245 851.3 752 61.3
Glyma.11G026100 Glycine max HOM05D005348 ORTHO05D006635 5.6e-245 851.3 522 77.2
FAN18G1071 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.0e-242 842.8 594 70.9
Solyc08g080450.3 Solanum lycopersicum HOM05D005348 ORTHO05D006635 4.5e-242 841.6 569 72.9
Glyma.09G081600 Glycine max HOM05D005348 ORTHO05D006635 2.0e-234 816.2 483 78.7
FAN18G0890 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.0e-230 803.9 700 61.4
CsaV3_5G003200 Cucumis sativus L. HOM05D005348 ORTHO05D006635 4.2e-224 781.9 529 73.5
Atru.chr9.1551 Acer truncatum HOM05D005348 ORTHO05D006635 1.8e-222 776.5 516 73.4
AUR62006548 Chenopodium quinoa HOM05D005348 ORTHO05D006635 6.7e-222 774.6 509 71.5
MBI04_g31975_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 3.8e-217 758.8 624 63.0
AUR62037708 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.1e-216 757.3 523 70.9
Nitab4.5_0002853g0050 Nicotiana tabacum HOM05D005348 ORTHO05D006635 1.4e-216 756.9 757 56.3
RcHm_v2.0_Chr7g0199071 Rosa chinensis HOM05D005348 ORTHO05D006635 5.5e-216 755.0 702 58.4
AUR62000200 Chenopodium quinoa HOM05D005348 ORTHO05D006635 1.5e-213 746.9 521 70.1
Os05g0269500 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 8.2e-204 714.5 607 59.5
COL.COLO4_05261 Corchorus olitorius HOM05D005348 ORTHO05D006635 1.6e-202 710.3 696 57.8
Gohir.D11G021100 Gossypium hirsutum HOM05D005348 ORTHO05D006635 5.2e-198 695.3 495 68.9
Os09g0525700 Oryza sativa ssp. japonica HOM05D005348 ORTHO05D006635 1.2e-197 694.1 621 58.3
Gohir.A11G021400 Gossypium hirsutum HOM05D005348 ORTHO05D006635 5.7e-197 691.8 441 74.8
VMungo1215G1946 Vigna mungo HOM05D005348 ORTHO05D006635 8.2e-196 688.0 414 77.8
FvH4_5g01650 Fragaria vesca HOM05D005348 ORTHO05D006635 2.4e-195 686.4 522 67.4
Lj8C237T7 Lonicera japonica HOM05D005348 ORTHO05D006635 3.2e-192 676.0 608 60.9
Ca_06657_v3 Cicer arietinum L. HOM05D005348 ORTHO05D006635 2.8e-175 619.8 699 52.4
unitig_26.g9696 Utricularia gibba HOM05D005348 ORTHO05D006635 1.3e-164 584.3 651 51.5
Cpa.g.sc29.190 Carica papaya HOM05D005348 ORTHO05D006635 3.6e-151 539.7 334 76.3
HPP92_004952 Vanilla planifolia HOM05D005348 ORTHO05D006635 1.7e-145 520.8 582 49.0
Zm00001eb103180 Zea mays HOM05D005348 ORTHO05D006635 9.3e-139 498.4 375 65.1
Glyma.09G081420 Glycine max HOM05D005348 ORTHO05D006635 1.4e-123 448.0 268 79.9
AUR62000197 Chenopodium quinoa HOM05D005348 ORTHO05D006635 2.7e-114 417.2 335 62.7
ATR0757G099 Amborella trichopoda HOM05D005348 ORTHO05D006635 3.6e-90 337.0 209 73.7
Hund02678 Selenicereus undatus HOM05D005348 ORTHO05D006635 5.0e-84 316.6 332 53.9
Prupe.8G039500 Prunus persica HOM05D005348 ORTHO05D006635 1.2e-82 312.0 297 55.2
Hund02677 Selenicereus undatus HOM05D005348 ORTHO05D006635 1.8e-81 308.1 272 61.8
VMungo1215G1628 Vigna mungo HOM05D005348 ORTHO05D006635 1.0e-73 282.3 221 62.9
FAN04G2632 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.5e-67 261.9 670 30.9
FAN04G3017 Fragaria x ananassa HOM05D005348 ORTHO05D006635 2.8e-66 257.7 176 69.9
Prupe.8G039400 Prunus persica HOM05D005348 ORTHO05D006635 1.2e-64 252.3 259 52.1
MSTRG.13824 Avicennia marina HOM05D005348 ORTHO05D006635 8.0e-58 229.6 204 57.4
Peaxi162Scf00714g00422 Petunia axillaris HOM05D005348 ORTHO05D006635 6.4e-55 219.9 238 48.3
MBI04_g31964_MAGBIO Magnolia biondii HOM05D005348 ORTHO05D006635 1.2e-48 199.1 194 56.7
Glyma.09G081380 Glycine max HOM05D005348 ORTHO05D006635 3.2e-46 191.0 145 62.1
FAN08G1421 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.2e-42 179.1 133 72.2
Glyma.11G176306 Glycine max HOM05D005348 ORTHO05D006635 4.7e-42 177.2 91 84.6
Cre16.g674852 Chlamydomonas reinhardtii HOM05D005348 ORTHO05D006635 2.6e-40 171.4 671 25.6
Glyma.01G216933 Glycine max HOM05D005348 ORTHO05D006635 6.4e-39 166.8 115 69.6
Gohir.D11G021150 Gossypium hirsutum HOM05D005348 ORTHO05D006635 5.4e-38 163.7 132 66.7
HanXRQChr02g0035411 Helianthus annuus HOM05D005348 ORTHO05D006635 2.1e-37 161.8 123 62.6
Mapoly0066s0032 Marchantia polymorpha HOM05D005348 ORTHO05D006635 1.3e-36 159.1 481 25.4
Glyma.11G026250 Glycine max HOM05D005348 ORTHO05D006635 8.6e-36 156.4 103 78.6
FAN08G1570 Fragaria x ananassa HOM05D005348 ORTHO05D006635 3.3e-35 154.5 187 51.3
CBR_g19301 Chara braunii HOM05D005348 ORTHO05D006635 3.1e-33 147.9 505 24.8
Lj8A237G27 Lonicera japonica HOM05D005348 ORTHO05D006635 1.2e-32 146.0 78 92.3
PGSC0003DMG400003049 Solanum tuberosum HOM05D005348 ORTHO05D006635 4.4e-32 144.1 197 43.7
FAN08G2219 Fragaria x ananassa HOM05D005348 ORTHO05D006635 1.9e-30 138.7 148 59.5
Mapoly0035s0066 Marchantia polymorpha HOM05D005348 ORTHO05D006635 1.6e-29 135.6 487 24.8
Pp3c25_15230 Physcomitrium patens HOM05D005348 ORTHO05D006635 3.5e-29 134.4 323 28.2
ATR0757G119 Amborella trichopoda HOM05D005348 ORTHO05D006635 2.4e-25 121.7 144 44.4
FAN13G0849 Fragaria x ananassa HOM05D005348 ORTHO05D006635 4.9e-23 114.0 219 38.8
arahy.Tifrunner.gnm1.ann1.AXGL4F Arachis hypogaea HOM05D005348 ORTHO05D006635 1.6e-18 99.0 59 76.3
CsaV3_6G021380 Cucumis sativus L. HOM05D005348 ORTHO05D006635 6.2e-18 97.1 132 43.2
FvH4_5g01630 Fragaria vesca HOM05D005348 ORTHO05D006635 1.2e-16 92.8 59 72.9


User provided reference genes

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