Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.8e-79 299.3 162 100.0
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 1.9e-73 279.3 162 93.8
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 2.9e-53 212.2 175 72.6
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.9e-52 209.5 149 74.5
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 4.3e-49 198.4 149 75.2
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 1.8e-47 193.0 159 69.2
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 1.3e-45 186.8 149 72.5
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 3.8e-45 185.3 168 67.9
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.2e-44 182.2 185 62.2
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 3.2e-44 182.2 185 62.2
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 7.2e-44 181.0 152 70.4
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 9.4e-44 180.6 156 68.6
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.2e-43 180.3 137 70.8
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 1.2e-43 180.3 149 69.8
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 3.6e-43 178.7 160 62.5
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 3.6e-43 178.7 149 66.4
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 3.6e-43 178.7 120 75.8
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 3.6e-43 178.7 120 75.8
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 4.6e-43 178.3 160 61.2
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 6.1e-43 177.9 112 81.2
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 1.4e-42 176.8 161 65.2
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 1.4e-42 176.8 139 71.2
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.9e-42 175.3 154 64.3
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 3.9e-42 175.3 162 64.8
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 5.1e-42 174.9 161 65.8
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.1e-41 173.7 164 61.6
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.0e-41 172.9 112 78.6
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 5.7e-41 171.4 164 61.0
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 1.3e-40 170.2 151 64.2
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 3.7e-40 168.7 166 60.8
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 3.7e-40 168.7 159 61.0
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 6.3e-40 167.9 117 73.5
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 1.8e-39 166.4 111 74.8
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 2.4e-39 166.0 152 62.5
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 2.4e-39 166.0 148 62.8
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 2.4e-39 166.0 148 62.8
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 3.1e-39 165.6 154 63.0
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 4.1e-39 165.2 164 57.9
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 4.1e-39 165.2 158 60.1
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 5.3e-39 164.9 111 73.9
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 6.9e-39 164.5 163 60.7
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 9.1e-39 164.1 160 59.4
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.0e-38 162.9 162 60.5
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 5.9e-38 161.4 163 58.9
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 7.7e-38 161.0 131 64.9
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.7e-37 159.8 118 71.2
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 1.7e-37 159.8 150 61.3
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 2.9e-37 159.1 116 70.7
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 6.5e-37 157.9 129 65.9
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 8.5e-37 157.5 103 76.7
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 1.9e-36 156.4 118 66.1
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.9e-36 156.4 163 57.1
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 1.9e-36 156.4 162 59.3
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.9e-36 156.4 180 56.1
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 3.2e-36 155.6 118 67.8
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 3.2e-36 155.6 115 70.4
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 3.2e-36 155.6 115 69.6
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 3.2e-36 155.6 115 70.4
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 3.2e-36 155.6 115 69.6
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 3.2e-36 155.6 115 69.6
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 4.2e-36 155.2 133 64.7
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 4.2e-36 155.2 162 57.4
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 4.2e-36 155.2 159 58.5
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 4.2e-36 155.2 134 62.7
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 5.5e-36 154.8 118 67.8
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 9.4e-36 154.1 146 59.6
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 1.6e-35 153.3 146 58.9
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 1.6e-35 153.3 146 58.9
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 2.1e-35 152.9 115 67.8
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 3.6e-35 152.1 163 55.2
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 3.6e-35 152.1 111 70.3
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 4.7e-35 151.8 144 59.0
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 6.1e-35 151.4 146 58.9
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 6.1e-35 151.4 146 58.9
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 6.1e-35 151.4 144 57.6
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 6.1e-35 151.4 146 59.6
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 7.9e-35 151.0 158 58.2
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 1.5e-33 146.7 139 62.6
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 3.3e-33 145.6 137 64.2
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 9.7e-33 144.1 110 63.6
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 2.8e-32 142.5 157 53.5
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.4e-31 140.2 122 63.9
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 1.8e-31 139.8 127 62.2
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.1e-31 138.7 90 77.8
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 1.2e-30 137.1 116 63.8
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 3.5e-30 135.6 133 59.4
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 7.7e-30 134.4 129 63.6
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 7.7e-30 134.4 137 60.6
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 2.2e-29 132.9 140 57.9
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 2.2e-29 132.9 140 57.9
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.2e-29 132.9 137 59.9
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 2.9e-29 132.5 130 61.5
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.8e-29 132.1 137 59.1
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 3.8e-29 132.1 91 73.6
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 6.5e-29 131.3 112 61.6
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 8.5e-29 131.0 121 58.7
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 3.2e-28 129.0 136 55.9
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 2.1e-27 126.3 107 62.6
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 3.6e-27 125.6 136 55.1
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 8.0e-27 124.4 134 56.7
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.4e-26 123.6 122 59.0
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 4.8e-24 115.2 94 66.0
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 6.3e-24 114.8 86 64.0
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 2.4e-23 112.8 106 62.3
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 5.3e-23 111.7 145 49.7
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 1.2e-22 110.5 124 54.8
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 2.7e-22 109.4 159 44.0
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 3.5e-22 109.0 147 44.2
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 4.5e-22 108.6 129 55.0
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 5.9e-22 108.2 80 65.0
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.5e-20 103.6 109 56.9
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 3.2e-20 102.4 125 52.8
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.2e-20 102.1 111 63.1
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 5.5e-20 101.7 68 72.1
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 1.2e-19 100.5 103 47.6
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 2.6e-17 92.8 84 53.6
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 1.7e-16 90.1 66 66.7
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 3.1e-15 85.9 115 48.7
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 1.2e-14 84.0 94 54.3
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.3e-13 80.5 155 40.0
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 6.5e-13 78.2 56 67.9
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 8.5e-13 77.8 78 48.7
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 8.5e-13 77.8 78 48.7
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 1.5e-12 77.0 67 62.7
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 2.3e-10 69.7 68 57.4
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 3.0e-10 69.3 68 57.4
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 1.5e-09 67.0 46 67.4
CSS0004409 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 5.7e-09 65.1 71 56.3
CSS0027281 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 5.7e-09 65.1 71 56.3
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 1.3e-08 63.9 87 48.3
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 1.3e-08 63.9 87 48.3
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 1.3e-08 63.9 87 48.3
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 3.7e-08 62.4 76 52.6
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 4.9e-08 62.0 87 47.1
Dinv38937 Davidia involucrata HOM05D000151 ORTHO05D000074 9.2e-07 57.8 38 81.6


User provided reference genes

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