Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38923 Davidia involucrata HOM05D001869 ORTHO05D002013 2.9e-38 161.4 79 100.0
Cc08_g14980 Coffea canephora HOM05D001869 ORTHO05D002013 5.6e-10 67.4 48 75.0
Actinidia28363 Actinidia chinensis HOM05D001869 ORTHO05D002013 7.4e-10 67.0 48 75.0
Dinv37620 Davidia involucrata HOM05D001869 ORTHO05D002013 7.4e-10 67.0 48 72.9
GSVIVG01019390001 Vitis vinifera HOM05D001869 ORTHO05D002013 7.4e-10 67.0 50 72.0
CiPaw.11G132600 Carya illinoinensis HOM05D001869 ORTHO05D002013 9.6e-10 66.6 49 69.4
Nn1g01585 Nelumbo nucifera HOM05D001869 ORTHO05D002013 4.8e-09 64.3 49 69.4
QL12p032442 Quercus lobata HOM05D001869 ORTHO05D002013 4.8e-09 64.3 49 69.4
Rhsim07G0088800 Rhododendron simsii HOM05D001869 ORTHO05D002013 4.8e-09 64.3 49 69.4
ATR0680G194 Amborella trichopoda HOM05D001869 ORTHO05D002013 6.2e-09 63.9 52 65.4
Prupe.5G103800 Prunus persica HOM05D001869 ORTHO05D002013 6.2e-09 63.9 49 67.3
TAR629G2031 Trochodendron aralioides HOM05D001869 ORTHO05D002013 8.1e-09 63.5 49 69.4
CANSAT21G1461 Cannabis sativa HOM05D001869 ORTHO05D002013 1.1e-08 63.2 49 67.3
Manes.01G060400 Manihot esculenta HOM05D001869 ORTHO05D002013 1.1e-08 63.2 49 69.4
Lj8C218G6 Lonicera japonica HOM05D001869 ORTHO05D002013 1.4e-08 62.8 48 68.8
MD06G1087700 Malus domestica HOM05D001869 ORTHO05D002013 1.4e-08 62.8 49 65.3
CSS0032953 Camellia sinensis var. sinensis HOM05D001869 ORTHO05D043331 1.8e-08 62.4 48 70.8
Eucgr.E00636 Eucalyptus grandis HOM05D001869 ORTHO05D002013 1.8e-08 62.4 49 67.3
MBI18_g32046_MAGBIO Magnolia biondii HOM05D001869 ORTHO05D002013 2.4e-08 62.0 49 67.3
PSO478G0900 Papaver somniferum HOM05D001869 ORTHO05D002013 2.4e-08 62.0 48 68.8
PSO782G3081 Papaver somniferum HOM05D001869 ORTHO05D002013 2.4e-08 62.0 48 68.8
Sabra03G0092600 Salix brachista HOM05D001869 ORTHO05D002013 2.4e-08 62.0 50 66.0
Sc22g0005490 Simmondsia chinensis HOM05D001869 ORTHO05D002013 2.4e-08 62.0 50 68.0
Duzib084G1111 Durio zibethinus HOM05D001869 ORTHO05D002013 3.1e-08 61.6 49 65.3
Cfa012204 Carpinus fangiana HOM05D001869 ORTHO05D002013 4.0e-08 61.2 95 49.5
Haze_08809 Corylus avellana HOM05D001869 ORTHO05D002013 5.3e-08 60.8 49 67.3
CiPaw.12G091300 Carya illinoinensis HOM05D001869 ORTHO05D002013 6.9e-08 60.5 119 42.0
Duzib068G0662 Durio zibethinus HOM05D001869 ORTHO05D002013 6.9e-08 60.5 49 67.3
Potri.003G130301 Populus trichocarpa HOM05D001869 ORTHO05D002013 6.9e-08 60.5 49 65.3
vmacro11389 Vaccinium macrocarpon HOM05D001869 ORTHO05D002013 6.9e-08 60.5 53 64.2
RcHm_v2.0_Chr6g0253581 Rosa chinensis HOM05D001869 ORTHO05D002013 9.0e-08 60.1 49 63.3
RcHm_v2.0_Chr7g0197131 Rosa chinensis HOM05D001869 ORTHO05D002013 9.0e-08 60.1 49 63.3
TWI38G0235 Tripterygium wilfordii HOM05D001869 ORTHO05D002013 9.0e-08 60.1 49 63.3
Atru.chr9.2155_Atru.chr9.2156 Acer truncatum HOM05D001869 ORTHO05D002013 1.5e-07 59.3 48 66.7
ATR0618G030 Amborella trichopoda HOM05D001869 ORTHO05D002013 1.5e-07 59.3 48 64.6
Ciclev10021507m.g Citrus clementina HOM05D001869 ORTHO05D002013 1.5e-07 59.3 55 65.5
FvH4_5g02820 Fragaria vesca HOM05D001869 ORTHO05D002013 2.0e-07 58.9 49 61.2
FAN04G1580 Fragaria x ananassa HOM05D001869 ORTHO05D002013 2.0e-07 58.9 49 61.2
FAN08G3517 Fragaria x ananassa HOM05D001869 ORTHO05D002013 2.0e-07 58.9 49 61.2
FAN13G2872 Fragaria x ananassa HOM05D001869 ORTHO05D002013 2.0e-07 58.9 49 61.2
FAN18G3005 Fragaria x ananassa HOM05D001869 ORTHO05D002013 2.0e-07 58.9 49 61.2
Mapoly0004s0118 Marchantia polymorpha HOM05D001869 ORTHO05D002013 2.0e-07 58.9 49 63.3
RcHm_v2.0_Chr5g0052501 Rosa chinensis HOM05D001869 ORTHO05D002013 2.0e-07 58.9 49 61.2
Thecc.03G282000 Theobroma cacao HOM05D001869 ORTHO05D002013 2.0e-07 58.9 49 65.3
TAR636G1858 Trochodendron aralioides HOM05D001869 ORTHO05D002013 2.0e-07 58.9 49 65.3
COL.COLO4_34495 Corchorus olitorius HOM05D001869 ORTHO05D002013 2.6e-07 58.5 49 63.3
Duzib205G0213 Durio zibethinus HOM05D001869 ORTHO05D002013 2.6e-07 58.5 49 65.3
Potri.001G101500 Populus trichocarpa HOM05D001869 ORTHO05D002013 2.6e-07 58.5 50 62.0
Migut.E01075 Erythranthe guttata HOM05D001869 ORTHO05D002013 3.4e-07 58.2 49 59.2
Glyma.10G267100 Glycine max HOM05D001869 ORTHO05D002013 3.4e-07 58.2 49 63.3
RhsimUnG0149200 Rhododendron simsii HOM05D001869 ORTHO05D002013 3.4e-07 58.2 47 68.1
Gohir.A12G230900 Gossypium hirsutum HOM05D001869 ORTHO05D002013 4.5e-07 57.8 118 42.4
Gohir.D12G232000 Gossypium hirsutum HOM05D001869 ORTHO05D002013 4.5e-07 57.8 118 41.5
Gorai.008G248300 Gossypium raimondii HOM05D001869 ORTHO05D002013 4.5e-07 57.8 118 41.5
PGR042G3708 Punica granatum HOM05D001869 ORTHO05D002013 4.5e-07 57.8 49 63.3
SMO147G0109 Selaginella moellendorffii HOM05D001869 ORTHO05D002013 4.5e-07 57.8 49 59.2
AagrBONN_evm.TU.Sc2ySwM_117.477 Anthoceros agrestis HOM05D001869 ORTHO05D002013 5.8e-07 57.4 49 61.2
Hund11452 Selenicereus undatus HOM05D001869 ORTHO05D002013 5.8e-07 57.4 49 61.2
AUR62001700 Chenopodium quinoa HOM05D001869 ORTHO05D002013 7.6e-07 57.0 49 65.3
Pp3c1_27480 Physcomitrium patens HOM05D001869 ORTHO05D002013 7.6e-07 57.0 49 61.2
AagrBONN_evm.TU.Sc2ySwM_117.3398 Anthoceros agrestis HOM05D001869 ORTHO05D002013 9.9e-07 56.6 49 61.2
Mapoly0187s0004 Marchantia polymorpha HOM05D001869 ORTHO05D002013 9.9e-07 56.6 49 61.2
Pp3c18_16140 Physcomitrium patens HOM05D001869 ORTHO05D002013 9.9e-07 56.6 49 61.2
Pp3c19_7020 Physcomitrium patens HOM05D001869 ORTHO05D002013 9.9e-07 56.6 49 61.2
Pp3c21_4170 Physcomitrium patens HOM05D001869 ORTHO05D002013 9.9e-07 56.6 49 61.2
Gohir.A13G225300 Gossypium hirsutum HOM05D001869 ORTHO05D002013 1.3e-06 56.2 49 59.2
Gohir.D13G230400 Gossypium hirsutum HOM05D001869 ORTHO05D002013 1.3e-06 56.2 49 59.2
vmacro13963 Vaccinium macrocarpon HOM05D001869 ORTHO05D002013 1.3e-06 56.2 47 63.8
EL10Ac5g12802 Beta vulgaris HOM05D001869 ORTHO05D002013 2.2e-06 55.5 49 61.2
AUR62010713 Chenopodium quinoa HOM05D001869 ORTHO05D002013 2.2e-06 55.5 49 61.2
AUR62020082 Chenopodium quinoa HOM05D001869 ORTHO05D002013 2.2e-06 55.5 48 64.6
AUR62027254 Chenopodium quinoa HOM05D001869 ORTHO05D002013 2.2e-06 55.5 49 61.2
GSVIVG01024805001 Vitis vinifera HOM05D001869 ORTHO05D002013 2.2e-06 55.5 51 60.8
CBR_g61511 Chara braunii HOM05D001869 ORTHO05D002013 2.9e-06 55.1 48 60.4
Sc21g0006160 Simmondsia chinensis HOM05D001869 ORTHO05D002013 3.8e-06 54.7 49 61.2
arahy.Tifrunner.gnm1.ann1.N1Z85G Arachis hypogaea HOM05D001869 ORTHO05D002013 4.9e-06 54.3 49 61.2
arahy.Tifrunner.gnm1.ann1.P2CA5S Arachis hypogaea HOM05D001869 ORTHO05D002013 4.9e-06 54.3 49 61.2
EL10Ac7g16110 Beta vulgaris HOM05D001869 ORTHO05D002013 4.9e-06 54.3 48 62.5
Sabra16G0150600 Salix brachista HOM05D001869 ORTHO05D002013 4.9e-06 54.3 95 45.3
Thecc.09G307200 Theobroma cacao HOM05D001869 ORTHO05D002013 4.9e-06 54.3 49 59.2
CiPaw.13G082600 Carya illinoinensis HOM05D001869 ORTHO05D002013 6.4e-06 53.9 49 61.2
MBI14_g32941_MAGBIO Magnolia biondii HOM05D001869 ORTHO05D002013 6.4e-06 53.9 50 60.0
PSO339G6126 Papaver somniferum HOM05D001869 ORTHO05D002013 6.4e-06 53.9 49 59.2
PSO384G4580 Papaver somniferum HOM05D001869 ORTHO05D002013 6.4e-06 53.9 49 59.2
Sed0019360 Sechium edule HOM05D001869 ORTHO05D002013 8.4e-06 53.5 49 55.1


User provided reference genes

Program Settings