Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 0.0e+00 2679.0 1369 100.0
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 0.0e+00 1308.1 1264 60.7
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 0.0e+00 1097.4 1333 51.8
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 8.7e-292 1007.7 1504 46.7
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 3.5e-285 985.7 1484 46.8
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 5.1e-268 928.7 1434 45.4
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 1.1e-267 927.5 1437 45.2
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 9.1e-257 891.3 1432 43.8
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.0e-252 877.9 1249 47.8
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 6.2e-221 772.3 1443 40.6
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 2.5e-214 750.4 1506 39.3
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 1.6e-205 721.1 1509 39.3
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 3.3e-182 643.7 1555 35.9
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 5.9e-131 473.4 1489 33.0
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 4.7e-128 463.8 1418 33.5
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 2.3e-127 461.5 1358 33.7
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 3.4e-126 457.6 1478 33.0
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.2e-120 439.1 1323 33.5
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 2.7e-120 438.0 1385 32.9
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 1.4e-119 435.6 1297 33.0
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 4.0e-119 434.1 1425 32.6
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.7e-118 430.3 1316 33.5
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 2.7e-115 421.4 1426 32.5
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 1.5e-113 415.6 1147 33.6
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 1.2e-110 406.0 1339 32.6
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 3.7e-109 401.0 1315 32.3
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 4.3e-105 387.5 1455 30.8
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 1.4e-103 382.5 1375 31.8
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 4.4e-102 377.5 1411 31.1
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 3.0e-98 364.8 1320 30.6
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.3e-95 355.1 388 56.4
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 1.1e-92 346.3 1359 30.8
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 2.8e-88 331.6 1434 30.1
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 6.4e-85 320.5 1318 29.1
ECA233G3260 Erigeron canadensis HOM05D001089 ORTHO05D000920 5.6e-81 307.4 629 38.8
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 1.1e-79 303.1 1404 29.6
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 3.1e-79 301.6 1357 29.0
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 6.9e-79 300.4 1316 29.6
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 3.4e-78 298.1 1395 29.7
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 1.2e-75 289.7 1410 29.2
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 7.3e-73 280.4 1404 29.4
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 2.8e-72 278.5 1359 28.3
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.6e-70 271.9 1407 28.6
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.6e-70 271.9 1415 29.3
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 2.9e-69 268.5 1401 27.6
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.8e-69 268.1 1404 29.1
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.8e-69 268.1 1417 29.1
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.9e-69 267.7 1408 28.6
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 2.4e-68 265.4 1343 28.6
HanXRQChr17g0533291 Helianthus annuus HOM05D006627 ORTHO05D007753 3.2e-68 265.0 1321 27.6
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 8.7e-66 256.9 1365 28.8
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 2.5e-65 255.4 1333 28.9
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 1.3e-64 253.1 1415 28.1
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 9.0e-63 246.9 1356 29.2
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 2.6e-62 245.4 1305 26.6
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 4.5e-62 244.6 1367 27.5
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 8.4e-61 240.4 1200 27.6
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 8.4e-61 240.4 1200 27.6
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 2.3e-58 232.3 1439 26.9
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 1.4e-55 223.0 1356 28.5
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 3.4e-54 218.4 1388 26.7
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 3.4e-54 218.4 1437 27.5
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 3.8e-53 214.9 1447 27.4
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 3.2e-52 211.8 1352 26.3
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 6.0e-51 207.6 1374 27.4
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 6.0e-51 207.6 1374 27.4
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 3.0e-50 205.3 1382 26.7
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 1.3e-48 199.9 1558 27.0
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 6.3e-48 197.6 1369 26.2
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 4.1e-47 194.9 1362 27.0
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 4.5e-46 191.4 1425 26.9
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 2.2e-45 189.1 1417 26.0
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 1.1e-44 186.8 1396 25.1
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.4e-44 186.4 1407 26.2
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 4.6e-43 181.4 1341 26.2
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 5.1e-42 177.9 1311 25.7
Lsat_1_v5_gn_3_6981 Lactuca sativa HOM05D006627 ORTHO05D007753 2.8e-40 172.2 1327 26.9
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 3.7e-40 171.8 424 36.1
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 1.2e-38 166.8 1433 24.8
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 4.5e-38 164.9 1510 24.8
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 5.9e-38 164.5 1333 26.0
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 1.4e-36 159.8 1332 24.8
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 1.9e-36 159.5 603 31.7
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 1.2e-35 156.8 1336 25.3
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 1.2e-35 156.8 1405 24.6
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 4.6e-35 154.8 1347 25.0
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 2.3e-34 152.5 1542 24.8
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 6.7e-34 151.0 1347 24.9
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 5.7e-33 147.9 186 52.2
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 3.1e-31 142.1 1330 24.9
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 4.1e-31 141.7 1413 24.8
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 5.5e-28 131.3 1348 24.5
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 2.1e-27 129.4 226 39.8
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 1.0e-26 127.1 536 28.0
CSS0006513 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 7.4e-25 120.9 728 27.9
CSS0040218 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D006673 7.4e-25 120.9 728 27.9
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 5.3e-23 114.8 1354 24.6
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 2.2e-21 109.4 737 27.5
HPP92_028524 Vanilla planifolia HOM05D061474 ORTHO05D007753 5.0e-21 108.2 357 32.2
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.2e-19 103.6 1228 24.4
ATR0681G260 Amborella trichopoda HOM05D000283 ORTHO05D006673 2.7e-19 102.4 1163 22.6
HPP92_028535 Vanilla planifolia HOM05D061474 ORTHO05D007753 4.7e-19 101.7 289 32.9
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 6.1e-19 101.3 1418 23.3
Aqoxy2G01934 Aquilegia oxysepala HOM05D000283 ORTHO05D006673 2.3e-18 99.4 448 29.5
TAR633G0056 Trochodendron aralioides HOM05D000283 ORTHO05D006673 3.0e-18 99.0 720 27.1
TAR636G0162 Trochodendron aralioides HOM05D000283 ORTHO05D006673 4.0e-18 98.6 466 30.9
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 9.7e-17 94.0 1449 23.1
Medtr1g115950 Medicago truncatula HOM05D000283 ORTHO05D006673 9.7e-17 94.0 421 32.3
Glyma.20G242400 Glycine max HOM05D000283 ORTHO05D006673 2.8e-16 92.4 474 30.8
Glyma.10G292400 Glycine max HOM05D000283 ORTHO05D006673 3.7e-16 92.0 401 32.2
Ciclev10033332m.g Citrus clementina HOM05D000283 ORTHO05D006673 4.1e-15 88.6 465 31.8
Nn2g11490 Nelumbo nucifera HOM05D000283 ORTHO05D006673 7.0e-15 87.8 462 30.1
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.6e-14 86.7 898 24.7
arahy.Tifrunner.gnm1.ann1.SA4FWZ Arachis hypogaea HOM05D000283 ORTHO05D006673 3.5e-14 85.5 435 30.6
Gorai.012G066900 Gossypium raimondii HOM05D000283 ORTHO05D006673 3.5e-14 85.5 448 29.9
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 7.7e-14 84.3 341 28.4
Gohir.D04G060201 Gossypium hirsutum HOM05D000283 ORTHO05D006673 1.0e-13 84.0 384 31.0
VMungo0720G0439 Vigna mungo HOM05D000283 ORTHO05D006673 1.0e-13 84.0 479 30.1
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 1.3e-13 83.6 1191 23.3
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 1.3e-13 83.6 452 29.2
arahy.Tifrunner.gnm1.ann1.U4C8JV Arachis hypogaea HOM05D000283 ORTHO05D006673 2.2e-13 82.8 435 30.3
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 2.9e-13 82.4 1272 23.0
Phvul.007G007900 Phaseolus vulgaris HOM05D000283 ORTHO05D006673 3.8e-13 82.0 416 31.0
CiPaw.02G178500 Carya illinoinensis HOM05D000283 ORTHO05D006673 1.1e-12 80.5 703 26.0
Ca_11324_v3 Cicer arietinum L. HOM05D000283 ORTHO05D006673 1.1e-12 80.5 414 31.2
Actinidia14584 Actinidia chinensis HOM05D006627 ORTHO05D007753 2.5e-12 79.3 109 43.1
Duzib114G0075 Durio zibethinus HOM05D000283 ORTHO05D006673 4.2e-12 78.6 821 24.4
FAN03G1488 Fragaria x ananassa HOM05D000283 ORTHO05D006673 4.2e-12 78.6 682 26.2
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 5.5e-12 78.2 1444 23.0
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 5.5e-12 78.2 372 27.2
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 7.2e-12 77.8 372 27.7
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 7.2e-12 77.8 372 27.7
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 9.4e-12 77.4 367 27.5
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 2.1e-11 76.3 373 27.3
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 2.1e-11 76.3 375 27.2
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 2.1e-11 76.3 373 27.3
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 2.1e-11 76.3 373 27.3
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 2.1e-11 76.3 334 29.3
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 2.7e-11 75.9 1302 23.3
Lalb_Chr02g0143831 Lupinus albus HOM05D000283 ORTHO05D006673 4.7e-11 75.1 423 29.3
CiPaw.01G279600 Carya illinoinensis HOM05D000283 ORTHO05D006673 8.0e-11 74.3 1129 23.6
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 1.0e-10 73.9 1233 23.4
FAN06G2682 Fragaria x ananassa HOM05D000283 ORTHO05D006673 1.0e-10 73.9 682 25.4
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 1.4e-10 73.6 337 28.8
Thecc.10G063100 Theobroma cacao HOM05D000283 ORTHO05D006673 1.4e-10 73.6 682 27.0
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 2.3e-10 72.8 327 27.8
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 2.3e-10 72.8 352 27.3
Gohir.A05G352800 Gossypium hirsutum HOM05D000283 ORTHO05D006673 2.3e-10 72.8 690 26.4
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 3.0e-10 72.4 682 26.5
RcHm_v2.0_Chr1g0365001 Rosa chinensis HOM05D000283 ORTHO05D006673 3.0e-10 72.4 432 29.2
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 5.2e-10 71.6 367 28.6
FvH4_7g20760 Fragaria vesca HOM05D000283 ORTHO05D006673 5.2e-10 71.6 683 25.8
FAN06G0550 Fragaria x ananassa HOM05D000283 ORTHO05D006673 5.2e-10 71.6 683 24.9
PSO478G2008 Papaver somniferum HOM05D000283 ORTHO05D006673 8.8e-10 70.9 403 28.0
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.0e-09 69.7 418 26.1
Lj5g0015824 Lotus japonicus HOM05D000283 ORTHO05D006673 2.0e-09 69.7 483 28.0
Lalb_Chr02g0143851 Lupinus albus HOM05D000283 ORTHO05D006673 4.4e-09 68.6 813 25.6
QL08p057512 Quercus lobata HOM05D000283 ORTHO05D006673 7.5e-09 67.8 1422 22.6
CsaV3_5G026060 Cucumis sativus L. HOM05D000283 ORTHO05D006673 1.3e-08 67.0 305 29.2
Lj8A92T85 Lonicera japonica HOM05D000283 ORTHO05D006673 1.7e-08 66.6 706 25.5
GSVIVG01032629001 Vitis vinifera HOM05D000283 ORTHO05D006673 2.2e-08 66.2 238 34.5
Cpa.g.sc1.302 Carica papaya HOM05D000283 ORTHO05D006673 3.7e-08 65.5 212 34.4
PSO782G0271 Papaver somniferum HOM05D000283 ORTHO05D006673 3.7e-08 65.5 424 27.6
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 4.8e-08 65.1 407 26.5
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 2.4e-07 62.8 319 26.6
PGSC0003DMG400011483 Solanum tuberosum HOM05D000283 ORTHO05D006673 3.1e-07 62.4 667 25.8
Duzib106G1116 Durio zibethinus HOM05D000283 ORTHO05D006673 7.0e-07 61.2 419 27.7
ClCG09G020310 Citrullus lanatus HOM05D000283 ORTHO05D006673 1.6e-06 60.1 347 28.5
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 1.6e-06 60.1 570 24.9
SalBow6G2235 Salvia bowleyana HOM05D000283 ORTHO05D006673 2.0e-06 59.7 687 25.0
Sabra08G0033700 Salix brachista HOM05D000283 ORTHO05D006673 3.5e-06 58.9 297 29.0
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 5.9e-06 58.2 274 28.5


User provided reference genes

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