Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 8.3e-120 433.7 220 100.0
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-90 337.0 220 79.5
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 5.6e-84 314.7 209 78.0
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.3e-83 313.5 209 77.5
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.4e-82 309.3 209 77.0
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 3.4e-81 305.4 206 76.7
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 6.0e-78 294.7 222 72.5
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.9e-77 292.0 229 69.9
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 1.9e-76 289.7 224 70.1
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.5e-76 289.3 194 76.8
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.4e-74 283.5 220 69.1
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 3.1e-74 282.3 211 70.1
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.1e-74 282.0 220 69.5
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.5e-73 280.0 221 71.9
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 7.6e-73 277.7 214 68.2
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 2.2e-72 276.2 214 71.0
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 2.9e-72 275.8 219 70.3
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 8.5e-72 274.2 226 68.1
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 8.5e-72 274.2 210 71.9
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 1.4e-71 273.5 216 68.5
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.9e-71 273.1 216 68.5
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 2.5e-71 272.7 223 66.4
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 4.2e-71 271.9 216 68.1
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 9.3e-71 270.8 222 67.6
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 1.2e-70 270.4 216 68.5
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 1.2e-70 270.4 205 71.2
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 2.7e-70 269.2 209 69.4
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 3.6e-70 268.9 188 72.3
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 3.6e-70 268.9 194 71.1
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 4.6e-70 268.5 222 67.1
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 6.1e-70 268.1 217 69.1
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 7.9e-70 267.7 158 82.3
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 1.0e-69 267.3 156 84.0
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 1.8e-69 266.5 213 70.9
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 1.8e-69 266.5 213 70.9
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.3e-69 266.2 187 73.8
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 3.0e-69 265.8 194 71.6
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 3.0e-69 265.8 226 68.1
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 3.9e-69 265.4 225 65.3
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 6.7e-69 264.6 194 70.1
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 6.7e-69 264.6 188 73.9
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.7e-69 264.6 188 73.9
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.7e-69 264.6 188 73.9
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.7e-69 264.6 188 73.9
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 8.7e-69 264.2 199 69.8
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 8.7e-69 264.2 193 72.5
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 8.7e-69 264.2 213 70.4
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 1.1e-68 263.8 155 83.9
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.5e-68 263.5 194 71.6
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.5e-68 263.5 194 71.6
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.5e-68 263.5 194 71.6
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 1.5e-68 263.5 194 71.6
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 1.5e-68 263.5 193 72.5
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.5e-68 263.5 188 73.4
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.9e-68 263.1 193 72.5
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.9e-68 263.1 193 72.5
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.9e-68 263.1 192 70.3
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 1.9e-68 263.1 216 67.1
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 3.3e-68 262.3 210 71.4
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 3.3e-68 262.3 212 66.0
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 4.3e-68 261.9 191 71.7
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 5.7e-68 261.5 191 70.7
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 5.7e-68 261.5 209 67.0
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 7.4e-68 261.2 189 69.8
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-67 260.0 194 70.6
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 2.2e-67 259.6 192 72.9
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.2e-67 259.6 160 81.2
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 2.8e-67 259.2 172 76.2
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.8e-67 259.2 212 69.8
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.7e-67 258.8 209 65.6
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 6.3e-67 258.1 216 64.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 6.3e-67 258.1 213 67.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 6.3e-67 258.1 191 69.1
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 6.3e-67 258.1 223 65.0
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 1.1e-66 257.3 223 65.9
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.1e-66 257.3 161 79.5
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.1e-66 257.3 220 64.5
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 1.4e-66 256.9 210 70.5
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.8e-66 256.5 185 74.1
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 4.1e-66 255.4 224 64.3
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 4.1e-66 255.4 215 68.4
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 6.9e-66 254.6 193 70.5
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 6.9e-66 254.6 226 66.8
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.2e-65 253.8 204 67.2
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.2e-65 253.8 211 67.3
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.5e-65 253.4 187 71.1
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 1.5e-65 253.4 205 67.3
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.4e-65 252.3 221 65.2
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 3.4e-65 252.3 185 73.0
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 3.4e-65 252.3 198 66.2
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 3.4e-65 252.3 192 69.3
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.3e-64 250.4 205 66.8
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 1.4e-63 246.9 272 54.0
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 1.4e-63 246.9 158 76.6
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 2.1e-62 243.0 224 59.8
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 2.7e-62 242.7 193 64.8
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.6e-62 242.3 199 67.3
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 3.6e-62 242.3 229 59.8
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.1e-61 238.4 220 62.7
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 6.7e-61 238.0 182 68.7
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 2.0e-60 236.5 195 67.7
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 3.3e-60 235.7 154 76.6
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 8.2e-59 231.1 203 62.1
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 9.1e-58 227.6 224 58.0
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.0e-57 226.5 196 63.3
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.6e-57 226.1 191 63.4
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 3.4e-57 225.7 194 62.9
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.0e-56 224.2 210 60.0
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 2.9e-56 222.6 123 87.0
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 5.0e-56 221.9 171 70.2
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 8.5e-56 221.1 150 72.7
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 1.2e-54 217.2 170 67.6
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 4.7e-54 215.3 170 67.1
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 1.0e-53 214.2 314 45.9
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 2.6e-52 209.5 224 55.4
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 1.7e-51 206.8 194 59.8
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 2.4e-50 203.0 191 59.2
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 9.1e-50 201.1 156 66.7
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.6e-49 199.5 227 54.2
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 4.5e-49 198.7 155 66.5
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.0e-48 197.6 212 55.7
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 1.0e-48 197.6 212 55.7
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 2.2e-48 196.4 118 78.8
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 8.5e-48 194.5 102 95.1
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 8.0e-46 188.0 120 76.7
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 1.2e-44 184.1 120 74.2
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 3.3e-44 182.6 122 75.4
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 8.5e-40 167.9 181 53.0
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 4.7e-38 162.2 93 82.8
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 4.4e-36 155.6 106 67.0
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 9.8e-36 154.5 151 53.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.7e-35 153.7 152 52.6
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 4.8e-35 152.1 137 55.5
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 1.8e-34 150.2 81 91.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 4.5e-33 145.6 115 60.0
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 1.3e-32 144.1 106 60.4
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 5.2e-29 132.1 95 66.3
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 4.4e-28 129.0 144 54.9
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.1e-26 122.5 67 88.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 4.1e-26 122.5 67 88.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 7.0e-26 121.7 80 76.2
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 4.4e-20 102.4 86 60.5
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 5.9e-17 92.0 70 67.1
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 5.6e-15 85.5 143 37.8
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 4.0e-13 79.3 50 74.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 3.0e-08 63.2 63 55.6
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 3.6e-06 56.2 38 71.1


User provided reference genes

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