Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 7.3e-43 176.8 87 100.0
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 1.2e-26 122.9 68 89.7
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 2.3e-25 118.6 69 85.5
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 4.0e-25 117.9 69 84.1
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.3e-23 112.8 69 79.7
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.1e-22 107.8 69 78.3
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 5.4e-22 107.5 67 77.6
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 9.2e-22 106.7 69 72.5
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.2e-21 106.3 69 71.0
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 2.7e-21 105.1 69 73.9
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 2.7e-21 105.1 62 80.6
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 2.7e-21 105.1 62 80.6
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 2.7e-21 105.1 62 80.6
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.5e-21 104.8 68 72.1
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.5e-21 104.8 68 72.1
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 3.5e-21 104.8 68 72.1
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 7.8e-21 103.6 62 79.0
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 1.0e-20 103.2 62 79.0
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.0e-20 103.2 68 70.6
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.7e-20 102.4 62 77.4
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.7e-20 102.4 69 73.9
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.3e-20 102.1 62 77.4
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 2.3e-20 102.1 68 70.6
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 3.0e-20 101.7 69 68.1
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.9e-20 101.3 62 75.8
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 5.1e-20 100.9 68 69.1
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 6.6e-20 100.5 62 77.4
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 8.6e-20 100.1 69 68.1
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 8.6e-20 100.1 62 79.0
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 8.6e-20 100.1 69 69.6
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.1e-19 99.8 68 69.1
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.1e-19 99.8 69 66.7
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 1.5e-19 99.4 68 67.6
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.5e-19 99.4 69 66.7
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 1.9e-19 99.0 62 72.6
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 1.9e-19 99.0 62 75.8
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 2.5e-19 98.6 69 63.8
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 2.5e-19 98.6 61 78.7
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 3.3e-19 98.2 69 69.6
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 4.3e-19 97.8 62 72.6
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 4.3e-19 97.8 62 75.8
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 5.6e-19 97.4 67 67.2
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 5.6e-19 97.4 62 72.6
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 5.6e-19 97.4 62 75.8
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.3e-19 97.1 68 67.6
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 7.3e-19 97.1 61 75.4
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 7.3e-19 97.1 62 72.6
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 9.5e-19 96.7 62 75.8
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 1.2e-18 96.3 62 72.6
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.2e-18 96.3 68 67.6
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.2e-18 96.3 68 67.6
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 1.6e-18 95.9 66 68.2
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.1e-18 95.5 64 70.3
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 2.1e-18 95.5 62 74.2
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 2.1e-18 95.5 61 68.9
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 2.1e-18 95.5 62 71.0
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.8e-18 95.1 61 73.8
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 2.8e-18 95.1 63 73.0
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 4.7e-18 94.4 64 68.8
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 4.7e-18 94.4 62 71.0
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 4.7e-18 94.4 61 73.8
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 8.1e-18 93.6 62 72.6
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 8.1e-18 93.6 62 69.4
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.1e-17 93.2 69 63.8
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.1e-17 93.2 69 65.2
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 1.4e-17 92.8 62 67.7
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 1.8e-17 92.4 69 62.3
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.8e-17 92.4 62 75.8
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 2.4e-17 92.0 62 64.5
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.4e-17 92.0 62 64.5
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 2.4e-17 92.0 62 66.1
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 3.1e-17 91.7 62 74.2
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 4.0e-17 91.3 68 60.3
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 5.2e-17 90.9 62 71.0
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 6.8e-17 90.5 62 67.7
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 8.9e-17 90.1 62 71.0
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 8.9e-17 90.1 62 71.0
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 8.9e-17 90.1 69 63.8
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 8.9e-17 90.1 61 68.9
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 1.2e-16 89.7 69 60.9
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 1.5e-16 89.4 62 67.7
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 2.0e-16 89.0 62 71.0
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.6e-16 88.6 69 59.4
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.6e-16 88.6 62 61.3
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 3.4e-16 88.2 62 61.3
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 3.4e-16 88.2 70 61.4
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 5.8e-16 87.4 62 64.5
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 5.8e-16 87.4 62 62.9
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 7.6e-16 87.0 61 67.2
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.3e-15 86.3 62 64.5
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.7e-15 85.9 62 66.1
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 2.2e-15 85.5 75 58.7
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 2.9e-15 85.1 62 62.9
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.9e-15 85.1 62 59.7
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 3.8e-15 84.7 61 60.7
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 3.8e-15 84.7 61 60.7
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 3.8e-15 84.7 62 64.5
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 4.9e-15 84.3 68 60.3
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 4.9e-15 84.3 54 75.9
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 8.4e-15 83.6 62 62.9
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.4e-14 82.8 61 62.3
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 1.4e-14 82.8 62 59.7
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 3.2e-14 81.6 62 62.9
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 3.2e-14 81.6 62 62.9
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 4.2e-14 81.3 61 59.0
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 4.2e-14 81.3 62 59.7
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 4.2e-14 81.3 68 55.9
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 5.4e-14 80.9 59 64.4
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 5.4e-14 80.9 61 59.0
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.2e-13 79.7 62 56.5
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 2.1e-13 79.0 72 48.6
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 2.7e-13 78.6 61 57.4
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 2.7e-13 78.6 62 56.5
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 2.7e-13 78.6 61 57.4
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 2.7e-13 78.6 62 58.1
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 3.5e-13 78.2 61 57.4
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 4.6e-13 77.8 62 54.8
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 4.6e-13 77.8 62 54.8
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 4.6e-13 77.8 62 54.8
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 4.6e-13 77.8 62 58.1
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 6.0e-13 77.4 61 57.4
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 7.8e-13 77.0 61 55.7
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 1.0e-12 76.6 61 54.1
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-12 76.6 61 55.7
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-12 76.6 61 57.4
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 1.0e-12 76.6 61 54.1
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 3.0e-12 75.1 61 55.7
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 3.0e-12 75.1 61 55.7
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 3.0e-12 75.1 61 55.7
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 6.6e-12 73.9 62 51.6
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.1e-11 73.2 61 57.4
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 1.9e-11 72.4 56 64.3
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 4.3e-11 71.2 52 61.5
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 5.6e-11 70.9 62 56.5
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 3.6e-10 68.2 52 59.6
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 3.6e-10 68.2 52 59.6
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 4.8e-10 67.8 52 59.6
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 4.8e-10 67.8 64 48.4
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 3.1e-09 65.1 63 42.9
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 6.9e-09 63.9 67 40.3
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 3.4e-08 61.6 52 55.8
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 1.7e-07 59.3 39 74.4
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 3.8e-07 58.2 59 45.8
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 8.4e-07 57.0 62 48.4
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.1e-06 56.6 44 56.8
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 1.4e-06 56.2 38 65.8
Cc00_g02290 Coffea canephora HOM05D004709 ORTHO05D005669 1.9e-06 55.8 33 81.8


User provided reference genes

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