Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.1e-53 214.2 101 100.0
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 1.5e-47 193.7 101 89.1
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 3.1e-45 186.0 101 86.1
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 1.2e-44 184.1 101 85.1
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 2.6e-44 183.0 101 85.1
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 2.6e-44 183.0 101 85.1
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 5.9e-44 181.8 101 85.1
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 1.0e-43 181.0 101 85.1
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.0e-43 181.0 101 85.1
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.7e-43 180.3 101 85.1
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.7e-43 180.3 101 84.2
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 2.2e-43 179.9 101 85.1
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 2.2e-43 179.9 101 85.1
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 2.2e-43 179.9 101 82.2
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.2e-43 179.9 93 89.2
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 5.0e-43 178.7 101 84.2
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.0e-43 178.7 101 84.2
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 5.0e-43 178.7 101 83.2
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.5e-43 178.3 101 82.2
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 6.5e-43 178.3 101 83.2
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 1.1e-42 177.6 101 85.1
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 1.1e-42 177.6 101 84.2
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 1.1e-42 177.6 101 84.2
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.1e-42 177.6 101 84.2
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.1e-42 177.6 101 84.2
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.4e-42 177.2 100 85.0
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 1.4e-42 177.2 100 85.0
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 1.4e-42 177.2 101 82.2
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 1.9e-42 176.8 101 82.2
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 3.2e-42 176.0 100 82.0
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 3.2e-42 176.0 100 85.0
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 3.2e-42 176.0 95 87.4
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 4.2e-42 175.6 84 95.2
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 5.5e-42 175.3 95 87.4
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 5.5e-42 175.3 86 93.0
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 7.2e-42 174.9 101 83.2
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 7.2e-42 174.9 92 89.1
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 7.2e-42 174.9 92 89.1
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 9.4e-42 174.5 100 83.0
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.2e-41 174.1 103 82.5
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 1.2e-41 174.1 95 88.4
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.2e-41 174.1 101 79.2
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 1.6e-41 173.7 97 86.6
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 1.6e-41 173.7 96 87.5
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 1.6e-41 173.7 92 89.1
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.6e-41 173.7 102 82.4
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 2.1e-41 173.3 101 84.2
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.7e-41 172.9 95 82.1
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.7e-41 172.9 95 82.1
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 2.7e-41 172.9 104 79.8
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 2.7e-41 172.9 86 91.9
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 2.7e-41 172.9 102 81.4
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 2.7e-41 172.9 86 91.9
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 3.6e-41 172.6 96 81.2
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 3.6e-41 172.6 96 81.2
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.6e-41 172.6 97 85.6
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 4.6e-41 172.2 97 85.6
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 4.6e-41 172.2 97 85.6
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 6.1e-41 171.8 101 79.2
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 6.1e-41 171.8 101 79.2
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 6.1e-41 171.8 103 81.6
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 6.1e-41 171.8 100 83.0
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.1e-41 171.8 83 95.2
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.1e-41 171.8 83 95.2
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 6.1e-41 171.8 101 79.2
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 1.0e-40 171.0 95 86.3
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 1.0e-40 171.0 93 84.9
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 1.0e-40 171.0 95 84.2
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 1.8e-40 170.2 101 80.2
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 1.8e-40 170.2 101 80.2
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 1.8e-40 170.2 97 84.5
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 1.8e-40 170.2 104 81.7
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.8e-40 170.2 101 81.2
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.8e-40 170.2 101 81.2
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-40 170.2 93 86.0
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.8e-40 170.2 93 86.0
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 1.8e-40 170.2 93 86.0
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 2.3e-40 169.9 104 78.8
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.3e-40 169.9 104 78.8
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 2.3e-40 169.9 97 83.5
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 2.3e-40 169.9 97 84.5
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 2.3e-40 169.9 92 84.8
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 2.3e-40 169.9 96 83.3
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 3.0e-40 169.5 95 85.3
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 3.0e-40 169.5 95 84.2
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.0e-40 169.5 97 83.5
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 3.0e-40 169.5 97 83.5
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 3.0e-40 169.5 93 84.9
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 3.0e-40 169.5 93 86.0
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.9e-40 169.1 101 80.2
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 5.1e-40 168.7 103 80.6
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 5.1e-40 168.7 100 83.0
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 5.1e-40 168.7 100 83.0
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 6.7e-40 168.3 96 84.4
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 6.7e-40 168.3 95 85.3
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 6.7e-40 168.3 96 84.4
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 6.7e-40 168.3 99 81.8
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 6.7e-40 168.3 90 85.6
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 8.8e-40 167.9 96 81.2
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 8.8e-40 167.9 105 78.1
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 8.8e-40 167.9 97 83.5
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 8.8e-40 167.9 95 84.2
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.1e-39 167.5 99 81.8
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.1e-39 167.5 99 81.8
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.1e-39 167.5 94 85.1
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.1e-39 167.5 83 94.0
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.1e-39 167.5 93 83.9
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 1.1e-39 167.5 81 95.1
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 1.1e-39 167.5 105 78.1
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 1.5e-39 167.2 97 82.5
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 1.5e-39 167.2 93 86.0
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 1.5e-39 167.2 96 84.4
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 2.0e-39 166.8 81 95.1
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 2.5e-39 166.4 92 87.0
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 2.5e-39 166.4 99 79.8
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 3.3e-39 166.0 99 82.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 4.3e-39 165.6 96 82.3
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.7e-39 165.2 87 86.2
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 5.7e-39 165.2 87 86.2
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 5.7e-39 165.2 96 83.3
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 7.4e-39 164.9 79 96.2
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 7.4e-39 164.9 95 80.0
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 9.7e-39 164.5 102 78.4
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 9.7e-39 164.5 96 81.2
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.3e-38 164.1 100 79.0
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.7e-38 163.7 96 80.2
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 1.7e-38 163.7 92 85.9
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 8.2e-38 161.4 93 81.7
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 1.1e-37 161.0 101 78.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 1.1e-37 161.0 105 74.3
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 3.1e-37 159.5 85 89.4
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 4.1e-37 159.1 79 93.7
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 4.1e-37 159.1 94 81.9
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 5.3e-37 158.7 104 76.0
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 5.3e-37 158.7 109 76.1
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 6.9e-37 158.3 104 78.8
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 9.1e-37 157.9 104 76.9
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 1.5e-36 157.1 105 73.3
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 2.9e-35 152.9 73 97.3
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.9e-35 152.9 103 74.8
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 3.8e-35 152.5 73 95.9
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 3.8e-35 152.5 93 78.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 5.0e-35 152.1 77 92.2
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 4.2e-34 149.1 91 74.7
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 1.0e-32 144.4 91 71.4
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 6.7e-32 141.7 98 67.3
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.3e-31 139.4 111 66.7
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.3e-31 139.4 111 66.7
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 7.4e-31 138.3 73 86.3
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 9.7e-31 137.9 91 70.3
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.2e-30 136.7 91 70.3
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 3.7e-30 136.0 91 68.1
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.7e-30 136.0 101 68.3
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 5.3e-29 132.1 99 65.7
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 5.3e-29 132.1 91 63.7
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 2.0e-28 130.2 120 59.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 4.5e-28 129.0 92 64.1
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 2.7e-25 119.8 76 76.3
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 8.2e-22 108.2 75 65.3
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 4.5e-20 102.4 101 54.5
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.3e-19 100.9 65 75.4
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.7e-19 100.5 73 68.5
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 2.5e-18 96.7 50 84.0
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 9.4e-18 94.7 88 51.1
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.1e-17 93.6 64 64.1
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.2e-14 83.6 77 51.9
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 2.4e-13 80.1 43 83.7
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 7.0e-13 78.6 48 81.2
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 1.6e-12 77.4 97 49.5
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 2.0e-12 77.0 100 48.0
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.0e-11 74.7 50 72.0
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.7e-11 73.9 100 46.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 6.1e-09 65.5 42 76.2
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 3.0e-08 63.2 40 75.0
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.5e-07 60.8 32 90.6


User provided reference genes

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