Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 1.2e-108 396.7 228 100.0
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 1.3e-67 260.4 229 70.3
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 5.4e-37 158.7 252 47.6
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 2.3e-35 153.3 252 46.8
Actinidia04866 Actinidia chinensis HOM05D008369 ORTHO05D005932 2.9e-30 136.3 244 41.0
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 1.4e-29 134.0 229 46.3
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 1.8e-24 117.1 245 39.6
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 2.2e-22 110.2 225 40.0
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 8.3e-22 108.2 212 36.8
TAR622G0621 Trochodendron aralioides HOM05D034691 ORTHO05D005932 3.2e-21 106.3 199 39.7
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 1.6e-20 104.0 222 43.2
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 2.0e-20 103.6 217 37.3
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 2.0e-20 103.6 203 44.3
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 6.0e-20 102.1 216 39.4
vmacro17570 Vaccinium macrocarpon HOM05D008369 ORTHO05D005932 3.0e-19 99.8 229 35.4
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.5e-18 97.4 216 35.2
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 1.9e-18 97.1 216 35.2
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 1.9e-18 97.1 207 36.7
Migut.D01759 Erythranthe guttata HOM05D012087 ORTHO05D005932 2.5e-18 96.7 231 34.2
MSTRG.11371 Avicennia marina HOM05D012087 ORTHO05D005932 4.3e-18 95.9 202 38.6
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 7.3e-18 95.1 223 43.9
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 1.6e-17 94.0 203 38.9
Nn3g17332 Nelumbo nucifera HOM05D009095 ORTHO05D005932 1.6e-17 94.0 222 34.2
Oeu052457.1 Olea europaea HOM05D012087 ORTHO05D005932 1.6e-17 94.0 203 43.8
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 1.6e-17 94.0 211 37.9
Lj9A467T87 Lonicera japonica HOM05D008369 ORTHO05D005932 2.1e-17 93.6 225 39.1
TAR622G1347 Trochodendron aralioides HOM05D034691 ORTHO05D005932 2.1e-17 93.6 197 35.0
SalBow5G3698 Salvia bowleyana HOM05D012087 ORTHO05D005932 2.8e-17 93.2 200 40.0
CiPaw.06G088700 Carya illinoinensis HOM05D009095 ORTHO05D005932 8.1e-17 91.7 200 37.0
Thecc.02G339500 Theobroma cacao HOM05D009095 ORTHO05D005932 1.4e-16 90.9 222 34.7
Nitab4.5_0001211g0150 Nicotiana tabacum HOM05D012087 ORTHO05D005932 8.9e-16 88.2 246 35.4
Nitab4.5_0005900g0030 Nicotiana tabacum HOM05D012087 ORTHO05D005932 1.2e-15 87.8 246 41.5
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 1.5e-15 87.4 212 41.0
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 5.8e-15 85.5 180 40.6
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 5.8e-15 85.5 201 41.8
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 9.8e-15 84.7 231 35.1
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 1.7e-14 84.0 211 45.5
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 2.2e-14 83.6 234 35.0
Haze_11958 Corylus avellana HOM05D009095 ORTHO05D005932 2.9e-14 83.2 134 42.5
COL.COLO4_27972 Corchorus olitorius HOM05D009095 ORTHO05D005932 3.7e-14 82.8 234 32.5
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 8.3e-14 81.6 216 35.2
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 8.3e-14 81.6 232 36.2
Duzib251G0477 Durio zibethinus HOM05D009095 ORTHO05D005932 8.3e-14 81.6 227 38.8
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 1.4e-13 80.9 230 33.9
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 2.4e-13 80.1 230 37.0
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 2.4e-13 80.1 171 38.0
Lsat_1_v5_gn_1_14361 Lactuca sativa HOM05D008369 ORTHO05D005932 5.4e-13 79.0 230 30.9
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 7.1e-13 78.6 187 43.3
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 9.2e-13 78.2 187 32.6
Oeu047275.1 Olea europaea HOM05D012087 ORTHO05D005932 9.2e-13 78.2 177 40.7
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 1.6e-12 77.4 187 45.5
Peaxi162Scf00274g00335 Petunia axillaris HOM05D012087 ORTHO05D005932 4.6e-12 75.9 223 33.2
Aqoxy3G03491 Aquilegia oxysepala HOM05D037250 ORTHO05D005932 6.0e-12 75.5 212 35.8
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 7.8e-12 75.1 228 32.5
QL03p069741 Quercus lobata HOM05D009095 ORTHO05D005932 2.3e-11 73.6 228 36.4
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 3.0e-11 73.2 229 29.7
CAN.G479.59 Capsicum annuum HOM05D012087 ORTHO05D005932 3.0e-11 73.2 209 38.8
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 3.9e-11 72.8 194 42.3
PSO063G1636 Papaver somniferum HOM05D037250 ORTHO05D050201 5.1e-11 72.4 214 35.5
GSVIVG01019947001 Vitis vinifera HOM05D009095 ORTHO05D005932 5.1e-11 72.4 222 33.3
PGSC0003DMG400024562 Solanum tuberosum HOM05D012087 ORTHO05D005932 8.6e-11 71.6 247 31.6
arahy.Tifrunner.gnm1.ann1.3IH7MW Arachis hypogaea HOM05D013667 ORTHO05D005932 1.1e-10 71.2 139 38.1
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 1.9e-10 70.5 179 33.0
PSO063G4624 Papaver somniferum HOM05D037250 ORTHO05D050201 1.9e-10 70.5 216 31.9
Nn4g23279 Nelumbo nucifera HOM05D034691 ORTHO05D005932 4.3e-10 69.3 241 27.4
Cc11_g12580 Coffea canephora HOM05D020902 ORTHO05D005932 7.3e-10 68.6 103 39.8
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 1.2e-09 67.8 196 32.1
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 1.2e-09 67.8 177 33.3
CsaV3_1G005690 Cucumis sativus L. HOM05D008369 ORTHO05D005932 2.8e-09 66.6 197 43.7
Solyc03g115730.3 Solanum lycopersicum HOM05D012087 ORTHO05D005932 2.8e-09 66.6 247 32.8
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 2.8e-09 66.6 206 29.1
Sopen03g034710 Solanum pennellii HOM05D012087 ORTHO05D005932 4.7e-09 65.9 247 33.6
SGA_v2.0_scaffold313G48329 Striga asiatica HOM05D012087 ORTHO05D005932 4.7e-09 65.9 219 31.1
vmacro01343 Vaccinium macrocarpon HOM05D009095 ORTHO05D005932 4.7e-09 65.9 229 30.1
CARHR205420 Cardamine hirsuta HOM05D010063 ORTHO05D011941 6.2e-09 65.5 223 30.9
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 6.2e-09 65.5 186 39.2
arahy.Tifrunner.gnm1.ann1.G7V7VG Arachis hypogaea HOM05D013667 ORTHO05D005932 8.1e-09 65.1 137 36.5
MELO3C002000.2 Cucumis melo HOM05D008369 ORTHO05D005932 8.1e-09 65.1 200 43.0
Cpa.g.sc13.297 Carica papaya HOM05D008369 ORTHO05D005932 3.1e-08 63.2 197 39.1
MELO3C002975.2 Cucumis melo HOM05D029799 ORTHO05D005932 3.1e-08 63.2 197 31.0
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 3.1e-08 63.2 169 32.0
Cpa.g.c38098 Carica papaya HOM05D009095 ORTHO05D005932 5.2e-08 62.4 117 38.5
Peaxi162Scf00408g00521 Petunia axillaris HOM05D020902 ORTHO05D005932 5.2e-08 62.4 109 38.5
Phvul.002G169000 Phaseolus vulgaris HOM05D013667 ORTHO05D005932 8.9e-08 61.6 120 38.3
Sc12g0006540 Simmondsia chinensis HOM05D008369 ORTHO05D005932 1.2e-07 61.2 228 28.9
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 1.2e-07 61.2 197 33.0
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.5e-07 60.8 63 49.2
Lj4g0019858 Lotus japonicus HOM05D013667 ORTHO05D005932 1.5e-07 60.8 80 47.5
PGR102G2341 Punica granatum HOM05D009095 ORTHO05D005932 1.5e-07 60.8 233 30.9
ClCG04G012080 Citrullus lanatus HOM05D008369 ORTHO05D005932 2.0e-07 60.5 178 36.0
Potri.017G079000 Populus trichocarpa HOM05D009095 ORTHO05D005932 3.4e-07 59.7 218 30.3
MBI16_g25840_MAGBIO Magnolia biondii HOM05D036885 ORTHO05D034247 4.4e-07 59.3 222 27.5
QL03p069756 Quercus lobata HOM05D012615 ORTHO05D005932 4.4e-07 59.3 99 38.4
HanXRQChr08g0210661 Helianthus annuus HOM05D009095 ORTHO05D005932 5.8e-07 58.9 83 43.4
HanXRQChr05g0155031 Helianthus annuus HOM05D008369 ORTHO05D011941 7.6e-07 58.5 249 28.1
Gohir.D12G166200 Gossypium hirsutum HOM05D009095 ORTHO05D005932 9.9e-07 58.2 130 33.1
THA.LOC104818323 Tarenaya hassleriana HOM05D010063 ORTHO05D011941 9.9e-07 58.2 244 27.9
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 9.9e-07 58.2 184 27.7
ClCG09G021960 Citrullus lanatus HOM05D029799 ORTHO05D005932 1.3e-06 57.8 197 28.9
DCAR_016580 Daucus carota HOM05D008369 ORTHO05D005932 1.3e-06 57.8 164 29.3
Lalb_Chr09g0329161 Lupinus albus HOM05D013667 ORTHO05D005932 1.3e-06 57.8 76 46.1
AL6G18100 Arabidopsis lyrata HOM05D010063 ORTHO05D011941 2.2e-06 57.0 246 29.7
Migut.L01243 Erythranthe guttata HOM05D009095 ORTHO05D005932 2.2e-06 57.0 114 36.8
Sopen04g001590 Solanum pennellii HOM05D020902 ORTHO05D005932 2.2e-06 57.0 105 34.3
Gohir.A12G163200 Gossypium hirsutum HOM05D009095 ORTHO05D005932 2.9e-06 56.6 77 40.3
Gohir.A03G102500 Gossypium hirsutum HOM05D009095 ORTHO05D005932 3.7e-06 56.2 79 49.4
Gorai.008G179000 Gossypium raimondii HOM05D009095 ORTHO05D005932 3.7e-06 56.2 127 33.1
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 4.9e-06 55.8 189 33.3
Solyc04g005555.1 Solanum lycopersicum HOM05D020902 ORTHO05D005932 4.9e-06 55.8 105 32.4
BcaB01g06057 Brassica carinata HOM05D010063 ORTHO05D011941 6.4e-06 55.5 244 26.6
BolC3t12923H Brassica oleracea HOM05D010063 ORTHO05D011941 6.4e-06 55.5 244 26.6
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 8.4e-06 55.1 216 31.9
Sabra17G0070100 Salix brachista HOM05D009095 ORTHO05D005932 8.4e-06 55.1 233 29.6


User provided reference genes

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