Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 0.0e+00 1345.1 666 100.0
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 1.2e-278 963.0 657 70.8
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.7e-272 942.6 645 70.9
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 6.8e-266 920.6 670 67.2
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 3.5e-262 908.3 694 66.1
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 6.6e-261 904.0 665 67.4
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.1e-260 903.3 646 68.7
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.6e-259 899.4 645 66.4
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.5e-257 892.9 654 65.6
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 9.8e-257 890.2 658 66.1
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 6.4e-256 887.5 661 66.6
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.1e-252 876.7 657 65.8
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.1e-250 870.2 650 64.5
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-250 869.8 652 68.3
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.8e-250 869.4 630 66.5
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 3.1e-250 868.6 644 65.2
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.2e-250 867.8 666 67.3
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.2e-249 866.7 672 64.1
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 3.4e-249 865.1 654 64.8
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.7e-248 862.8 658 63.2
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 3.8e-248 861.7 666 62.8
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 1.4e-247 859.8 644 64.9
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.9e-247 859.4 696 63.6
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.6e-246 856.3 638 66.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.7e-246 855.5 638 64.3
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 7.8e-246 854.0 676 62.0
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 5.1e-245 851.3 631 64.8
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 5.1e-245 851.3 656 61.9
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.5e-244 849.0 648 63.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 5.6e-244 847.8 657 62.7
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.8e-242 842.8 632 65.0
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 4.0e-242 841.6 661 61.0
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 2.6e-241 839.0 653 62.3
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.5e-238 828.6 636 63.8
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.5e-236 823.2 650 62.2
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 4.8e-235 818.1 656 59.9
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 6.2e-235 817.8 689 59.1
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 4.0e-234 815.1 810 54.3
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.4e-233 812.0 653 60.6
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 2.3e-229 799.3 697 59.8
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.3e-229 799.3 634 61.7
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.5e-228 796.6 665 60.6
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.1e-226 790.4 681 60.1
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.5e-225 786.6 697 56.7
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 8.4e-224 780.8 659 59.6
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.1e-223 780.4 628 60.5
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 4.6e-222 775.0 653 59.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 6.0e-222 774.6 682 58.4
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 2.5e-220 769.2 684 57.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 2.5e-220 769.2 670 57.3
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 5.3e-218 761.5 677 57.0
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.0e-216 757.3 669 56.2
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.0e-216 757.3 646 57.0
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 2.2e-216 756.1 632 59.7
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 5.5e-215 751.5 655 56.3
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 7.1e-215 751.1 634 57.1
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 3.5e-214 748.8 632 57.1
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 3.5e-214 748.8 633 58.0
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 7.9e-214 747.7 641 56.6
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 1.0e-213 747.3 663 55.8
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 2.5e-212 742.7 643 56.8
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 2.5e-212 742.7 633 56.9
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 6.9e-210 734.6 652 58.0
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.2e-209 733.8 665 54.9
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 2.6e-209 732.6 654 55.4
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 4.5e-209 731.9 672 55.1
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 5.9e-209 731.5 676 56.1
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.9e-207 726.5 668 54.9
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 7.2e-207 724.5 655 55.7
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 4.6e-206 721.8 703 52.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.3e-204 715.7 653 56.0
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 4.3e-204 715.3 570 61.1
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.4e-202 710.3 656 54.6
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.2e-201 707.2 640 55.5
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 8.5e-200 701.0 602 56.5
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.2e-193 680.6 677 52.0
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 3.2e-191 672.5 650 54.8
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.1e-188 664.1 662 50.6
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 9.7e-188 661.0 614 55.4
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.6e-185 652.9 678 50.9
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 8.5e-184 647.9 640 51.7
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.7e-181 638.3 708 48.4
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 3.3e-180 636.0 670 48.5
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 5.7e-180 635.2 669 49.9
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.3e-179 634.0 577 58.4
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 3.4e-164 582.8 648 48.9
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 6.3e-163 578.6 378 74.9
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 8.3e-163 578.2 567 52.7
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.5e-161 572.8 388 70.1
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 1.4e-154 550.8 450 59.8
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 2.1e-150 537.0 451 59.4
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 3.5e-145 519.6 447 58.4
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.6e-142 509.6 648 41.4
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 1.8e-141 507.3 641 44.9
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 4.1e-130 469.5 328 70.4
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 1.2e-121 441.4 626 39.0
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.3e-110 404.8 580 39.5
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.5e-103 381.3 539 38.8
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 3.7e-102 376.7 260 66.5
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 7.4e-95 352.4 243 70.4
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.7e-83 314.7 343 44.9
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 2.7e-81 307.4 289 53.6
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 8.8e-72 275.8 262 55.0
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 7.0e-69 266.2 214 60.7
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 2.6e-68 264.2 255 56.9
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 5.9e-68 263.1 270 49.6
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.3e-64 251.1 183 68.9
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 4.2e-58 230.3 197 60.9
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 5.2e-56 223.4 248 46.8
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.8e-56 222.6 339 37.8
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.9e-50 204.9 477 30.8
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 8.3e-46 189.5 157 59.2
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 3.8e-43 180.6 128 70.3
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 4.4e-39 167.2 199 43.2
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.7e-38 165.2 340 31.2
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-38 164.5 314 32.5
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.6e-36 157.1 383 29.5
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 5.0e-35 153.7 169 46.7
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-34 152.1 186 44.1
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 2.1e-33 148.3 87 77.0
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.2e-32 143.7 314 30.9
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-31 142.1 85 77.6
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.0e-31 141.7 316 32.6
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.7e-30 137.5 85 75.3
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.9e-30 137.1 85 75.3
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-28 131.7 185 37.8
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 1.0e-27 129.4 103 62.1
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.9e-27 127.5 83 73.5
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 6.6e-27 126.7 312 29.5
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 1.9e-26 125.2 474 25.1
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 3.3e-26 124.4 143 44.1
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.6e-25 120.9 157 43.3
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.2e-25 120.2 270 31.1
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-24 119.4 204 32.8
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 4.9e-22 110.5 117 50.4
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.2e-21 107.8 226 31.9
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.1e-21 107.5 85 63.5
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 7.1e-21 106.7 418 25.8
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 1.0e-19 102.8 101 52.5
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-19 102.4 136 40.4
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 2.4e-16 91.7 90 55.6
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 4.0e-16 90.9 76 56.6
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 4.4e-15 87.4 60 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.8e-15 87.0 118 39.0
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.7e-14 85.5 173 34.1
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 6.4e-14 83.6 59 66.1
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 8.4e-14 83.2 124 41.9
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.4e-13 81.6 81 45.7
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 9.2e-13 79.7 79 49.4
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.2e-12 79.3 77 49.4
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 7.8e-12 76.6 50 68.0
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.6e-11 73.6 163 28.8
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 1.5e-10 72.4 56 64.3
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.3e-10 71.2 60 51.7
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.6e-10 69.7 45 73.3
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 1.2e-09 69.3 45 62.2
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.6e-09 68.9 47 66.0
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-08 65.5 42 73.8
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.0e-08 64.3 209 27.3
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.7e-06 58.9 34 73.5


User provided reference genes

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