Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38625 Davidia involucrata HOM05D007643 ORTHO05D007801 2.0e-105 386.0 216 100.0
Dinv36824 Davidia involucrata HOM05D007643 ORTHO05D007801 3.3e-36 156.0 127 63.8
Actinidia35057 Actinidia chinensis HOM05D007643 ORTHO05D007801 1.3e-35 154.1 150 52.7
Actinidia18967 Actinidia chinensis HOM05D007643 ORTHO05D007801 5.3e-34 148.7 149 51.0
Rhsim12G0146900 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.9e-32 142.1 147 51.0
vmacro16469 Vaccinium macrocarpon HOM05D007643 ORTHO05D007801 1.6e-30 137.1 148 50.0
CSS0044770 Camellia sinensis var. sinensis HOM05D007643 ORTHO05D007801 3.1e-26 122.9 99 60.6
Duzib068G1429 Durio zibethinus HOM05D007643 ORTHO05D007801 7.6e-25 118.2 93 60.2
Thecc.03G110800 Theobroma cacao HOM05D007643 ORTHO05D007801 1.7e-24 117.1 93 58.1
Eucgr.K02633 Eucalyptus grandis HOM05D007643 ORTHO05D007801 3.8e-24 115.9 95 60.0
TWI81G0573 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 6.4e-24 115.2 146 44.5
Sed0015671 Sechium edule HOM05D007643 ORTHO05D007801 1.1e-23 114.4 159 44.0
Prupe.5G211300 Prunus persica HOM05D007643 ORTHO05D007801 1.4e-23 114.0 159 42.1
FAN18G4512 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.9e-23 113.6 95 58.9
Gohir.D11G038100 Gossypium hirsutum HOM05D007643 ORTHO05D007801 1.9e-23 113.6 158 43.0
QL10p021414 Quercus lobata HOM05D007643 ORTHO05D007801 1.9e-23 113.6 93 59.1
RcHm_v2.0_Chr7g0183911 Rosa chinensis HOM05D007643 ORTHO05D007801 1.9e-23 113.6 95 60.0
Gorai.007G040800 Gossypium raimondii HOM05D007643 ORTHO05D007801 2.4e-23 113.2 158 43.0
Ciclev10022625m.g Citrus clementina HOM05D007643 ORTHO05D007801 9.3e-23 111.3 93 55.9
TWI15G0080 Tripterygium wilfordii HOM05D007643 ORTHO05D007801 9.3e-23 111.3 145 43.4
CiPaw.15G116100 Carya illinoinensis HOM05D007643 ORTHO05D007801 3.5e-22 109.4 93 54.8
PGR044G0452 Punica granatum HOM05D007643 ORTHO05D007801 3.5e-22 109.4 95 58.9
Atru.chr9.639 Acer truncatum HOM05D007643 ORTHO05D007801 4.6e-22 109.0 99 56.6
CsaV3_1G003240 Cucumis sativus L. HOM05D007643 ORTHO05D007801 4.6e-22 109.0 158 41.1
ClCG06G015360 Citrullus lanatus HOM05D007643 ORTHO05D007801 7.9e-22 108.2 159 42.1
FAN08G1142 Fragaria x ananassa HOM05D007643 ORTHO05D007801 1.3e-21 107.5 93 57.0
COL.COLO4_28832 Corchorus olitorius HOM05D007643 ORTHO05D007801 1.8e-21 107.1 94 56.4
MELO3C017259.2 Cucumis melo HOM05D007643 ORTHO05D007801 6.7e-21 105.1 94 54.3
MD14G1217500 Malus domestica HOM05D007643 ORTHO05D007801 8.7e-21 104.8 96 53.1
CANSAT11G0293 Cannabis sativa HOM05D007643 ORTHO05D007801 1.1e-20 104.4 97 55.7
Cfa019854 Carpinus fangiana HOM05D007643 ORTHO05D007801 1.1e-20 104.4 97 53.6
Potri.012G065400 Populus trichocarpa HOM05D007643 ORTHO05D007801 4.3e-20 102.4 79 60.8
Sabra12G0046800 Salix brachista HOM05D007643 ORTHO05D007801 1.3e-19 100.9 79 59.5
Gorai.008G200700 Gossypium raimondii HOM05D007643 ORTHO05D007801 6.9e-18 95.1 78 53.8
Gohir.D12G187200 Gossypium hirsutum HOM05D007643 ORTHO05D007801 9.0e-18 94.7 78 53.8
GSVIVG01008172001 Vitis vinifera HOM05D007643 ORTHO05D007801 1.2e-17 94.4 100 50.0
MD06G1206900 Malus domestica HOM05D007643 ORTHO05D007801 1.5e-17 94.0 159 36.5
Nitab4.5_0000646g0290 Nicotiana tabacum HOM05D007643 ORTHO05D007801 2.0e-17 93.6 95 53.7
Peaxi162Scf00017g03267 Petunia axillaris HOM05D007643 ORTHO05D007801 2.6e-17 93.2 99 51.5
THA.LOC104800981 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 3.4e-17 92.8 87 50.6
Nitab4.5_0002805g0050 Nicotiana tabacum HOM05D007643 ORTHO05D007801 4.5e-17 92.4 95 52.6
Lsat_1_v5_gn_4_112541 Lactuca sativa HOM05D007643 ORTHO05D007801 5.8e-17 92.0 104 51.0
CAN.G982.32 Capsicum annuum HOM05D007643 ORTHO05D007801 1.0e-16 91.3 90 54.4
THA.LOC104818362 Tarenaya hassleriana HOM05D007643 ORTHO05D007801 1.0e-16 91.3 87 52.9
Lalb_Chr23g0273871 Lupinus albus HOM05D007643 ORTHO05D007801 1.3e-16 90.9 93 46.2
Aa31LG11G2440 Aethionema arabicum HOM05D007643 ORTHO05D007801 1.7e-16 90.5 87 50.6
Migut.G00548 Erythranthe guttata HOM05D007643 ORTHO05D007801 1.7e-16 90.5 93 52.7
Cc04_g08010 Coffea canephora HOM05D007643 ORTHO05D007801 2.2e-16 90.1 98 48.0
Gohir.A12G184500 Gossypium hirsutum HOM05D007643 ORTHO05D007801 2.9e-16 89.7 78 52.6
Nitab4.5_0004190g0030 Nicotiana tabacum HOM05D007643 ORTHO05D007801 6.5e-16 88.6 79 58.2
MSTRG.9860 Avicennia marina HOM05D007643 ORTHO05D007801 8.4e-16 88.2 90 51.1
Glyma.06G180500 Glycine max HOM05D007643 ORTHO05D007801 8.4e-16 88.2 160 36.2
Oeu059396.1 Olea europaea HOM05D007643 ORTHO05D007801 2.5e-15 86.7 90 54.4
PSO063G2669 Papaver somniferum HOM05D007643 ORTHO05D007801 4.2e-15 85.9 93 47.3
Manes.14G090200 Manihot esculenta HOM05D007643 ORTHO05D007801 7.1e-15 85.1 128 37.5
PSO782G0046 Papaver somniferum HOM05D007643 ORTHO05D007801 7.1e-15 85.1 93 46.2
Glyma.04G185600 Glycine max HOM05D007643 ORTHO05D007801 1.2e-14 84.3 92 46.7
Nitab4.5_0002449g0120 Nicotiana tabacum HOM05D007643 ORTHO05D007801 1.2e-14 84.3 78 56.4
Phvul.009G176200 Phaseolus vulgaris HOM05D007643 ORTHO05D007801 1.2e-14 84.3 95 45.3
AUR62032152 Chenopodium quinoa HOM05D007643 ORTHO05D007801 1.6e-14 84.0 96 49.0
Lj1g0019261 Lotus japonicus HOM05D007643 ORTHO05D007801 1.6e-14 84.0 90 51.1
Sopen03g033740 Solanum pennellii HOM05D007643 ORTHO05D007801 4.6e-14 82.4 92 52.2
PGSC0003DMG400024520 Solanum tuberosum HOM05D007643 ORTHO05D007801 4.6e-14 82.4 92 52.2
TPR.G15310 Trifolium pratense HOM05D007643 ORTHO05D007801 7.9e-14 81.6 91 46.2
Manes.06G079602 Manihot esculenta HOM05D007643 ORTHO05D007801 1.0e-13 81.3 78 52.6
SGA_v2.0_scaffold67G22694 Striga asiatica HOM05D007643 ORTHO05D007801 1.0e-13 81.3 90 48.9
unitig_746.g26846 Utricularia gibba HOM05D007643 ORTHO05D007801 1.3e-13 80.9 87 46.0
Psat1g029200 Pisum sativum HOM05D007643 ORTHO05D007801 2.3e-13 80.1 86 47.7
Os09g0473966 Oryza sativa ssp. japonica HOM05D007643 ORTHO05D007801 3.0e-13 79.7 79 54.4
AUR62039686 Chenopodium quinoa HOM05D007643 ORTHO05D007801 5.1e-13 79.0 96 47.9
Thhalv10004975m.g Eutrema salsugineum HOM05D010173 ORTHO05D007801 5.1e-13 79.0 68 51.5
Medtr2g059060 Medicago truncatula HOM05D007643 ORTHO05D007801 1.1e-12 77.8 89 44.9
ECA232G2778 Erigeron canadensis HOM05D007643 ORTHO05D007801 1.5e-12 77.4 95 43.2
MSTRG.4170 Avicennia marina HOM05D007643 ORTHO05D007801 3.3e-12 76.3 91 47.3
CDE02G0802 Ceratophyllum demersum HOM05D007643 ORTHO05D007801 3.3e-12 76.3 75 46.7
Ca_26376_v3 Cicer arietinum L. HOM05D007643 ORTHO05D007801 9.6e-12 74.7 140 35.0
arahy.Tifrunner.gnm1.ann1.Z569TI Arachis hypogaea HOM05D007643 ORTHO05D007801 2.1e-11 73.6 96 43.8
Solyc06g069350.3 Solanum lycopersicum HOM05D007643 ORTHO05D007801 2.8e-11 73.2 97 48.5
Aqoxy3G03786 Aquilegia oxysepala HOM05D007643 ORTHO05D007801 6.3e-11 72.0 70 51.4
Sp2g24160 Schrenkiella parvula HOM05D010173 ORTHO05D007801 6.3e-11 72.0 99 40.4
Nn3g17593 Nelumbo nucifera HOM05D007643 ORTHO05D007801 2.4e-10 70.1 54 55.6
SEGI_00634 Sequoiadendron giganteum HOM05D007643 ORTHO05D007801 3.1e-10 69.7 89 41.6
FvH4_5g13250 Fragaria vesca HOM05D007643 ORTHO05D007801 4.1e-10 69.3 57 56.1
FAN13G0443 Fragaria x ananassa HOM05D007643 ORTHO05D007801 6.9e-10 68.6 61 54.1
ATR0691G209 Amborella trichopoda HOM05D007643 ORTHO05D007801 9.0e-10 68.2 84 45.2
Zm00001eb101340 Zea mays HOM05D007643 ORTHO05D007801 7.6e-09 65.1 83 39.8
Ah.02g114340 Amaranthus hybridus HOM05D007643 ORTHO05D007801 3.8e-08 62.8 93 43.0
AL269U10022 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 6.5e-08 62.0 68 47.1
AL269U10030 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 6.5e-08 62.0 68 47.1
AL269U10040 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 6.5e-08 62.0 68 47.1
AL269U10050 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 6.5e-08 62.0 68 47.1
AL3G41370 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 6.5e-08 62.0 68 47.1
AL3G41380 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 6.5e-08 62.0 68 47.1
AL3G41390 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 6.5e-08 62.0 68 47.1
AL8G37440 Arabidopsis lyrata HOM05D010173 ORTHO05D007801 6.5e-08 62.0 68 47.1
Carub.0008s2154 Capsella rubella HOM05D010173 ORTHO05D007801 6.5e-08 62.0 68 42.6
Hund02541 Selenicereus undatus HOM05D007643 ORTHO05D007801 1.9e-07 60.5 134 32.8
Zm00001eb033620 Zea mays HOM05D031404 ORTHO05D007801 4.2e-07 59.3 73 39.7
AT5G60840 Arabidopsis thaliana HOM05D010173 ORTHO05D007801 1.2e-06 57.8 68 47.1
A03p46540 Brassica napus HOM05D010173 ORTHO05D007801 1.6e-06 57.4 71 38.0
BraA03t13778Z Brassica rapa HOM05D010173 ORTHO05D007801 1.6e-06 57.4 71 38.0
Zm00001eb199190 Zea mays HOM05D031404 ORTHO05D007801 2.1e-06 57.0 73 38.4
CARHR274520 Cardamine hirsuta HOM05D010173 ORTHO05D007801 3.6e-06 56.2 75 38.7
Haze_18546 Corylus avellana HOM05D007643 ORTHO05D007801 3.6e-06 56.2 62 48.4


User provided reference genes

Program Settings