Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 9.5e-98 360.1 178 100.0
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 6.1e-20 101.7 65 78.5
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 1.4e-19 100.5 63 74.6
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 3.0e-19 99.4 65 75.4
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 3.0e-19 99.4 66 78.8
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 3.0e-19 99.4 67 76.1
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 3.9e-19 99.0 67 77.6
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 5.1e-19 98.6 67 77.6
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 6.7e-19 98.2 65 76.9
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.7e-19 98.2 65 76.9
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 8.8e-19 97.8 67 77.6
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 1.1e-18 97.4 67 77.6
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 1.1e-18 97.4 65 75.4
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 2.0e-18 96.7 65 73.8
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.6e-18 96.3 65 73.8
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 3.3e-18 95.9 66 77.3
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 1.7e-17 93.6 65 72.3
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 2.2e-17 93.2 60 76.7
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 2.2e-17 93.2 66 71.2
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 2.8e-17 92.8 68 73.5
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 2.8e-17 92.8 73 67.1
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 3.7e-17 92.4 65 72.3
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 6.3e-17 91.7 67 73.1
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 6.3e-17 91.7 63 73.0
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 8.2e-17 91.3 60 75.0
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 8.2e-17 91.3 69 72.5
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 8.2e-17 91.3 65 69.2
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 3.1e-16 89.4 59 76.3
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 6.9e-16 88.2 64 70.3
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 9.1e-16 87.8 65 67.7
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 2.0e-15 86.7 66 66.7
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 2.0e-15 86.7 66 66.7
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 2.6e-15 86.3 69 69.6
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 3.4e-15 85.9 67 70.1
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 3.4e-15 85.9 79 60.8
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 7.7e-15 84.7 65 67.7
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 1.3e-14 84.0 73 64.4
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.3e-14 84.0 73 64.4
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 5.0e-14 82.0 63 68.3
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 8.5e-14 81.3 100 52.0
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.4e-13 80.5 66 63.6
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 3.2e-13 79.3 73 64.4
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 4.2e-13 79.0 56 66.1
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 5.5e-13 78.6 63 66.7
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 1.2e-12 77.4 66 65.2
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.2e-12 77.4 73 61.6
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 2.1e-12 76.6 60 61.7
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 3.6e-12 75.9 51 72.5
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 6.1e-12 75.1 73 56.2
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 2.3e-11 73.2 47 74.5
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 3.9e-11 72.4 44 79.5
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 1.1e-10 70.9 74 47.3
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 4.4e-10 68.9 55 63.6
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 5.7e-10 68.6 43 74.4
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 7.4e-10 68.2 48 68.8
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 9.7e-10 67.8 46 73.9
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.3e-09 67.4 52 63.5
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.7e-09 67.0 44 72.7
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 2.2e-09 66.6 43 76.7
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 2.8e-09 66.2 38 84.2
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 3.7e-09 65.9 48 75.0
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 4.8e-09 65.5 43 74.4
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 6.3e-09 65.1 50 66.0
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 6.3e-09 65.1 47 68.1
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 8.2e-09 64.7 40 77.5
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 1.1e-08 64.3 62 59.7
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 1.4e-08 63.9 38 84.2
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 1.8e-08 63.5 43 72.1
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 2.4e-08 63.2 41 70.7
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 4.1e-08 62.4 37 81.1
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 5.3e-08 62.0 43 69.8
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 5.3e-08 62.0 43 69.8
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 5.3e-08 62.0 43 69.8
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 5.3e-08 62.0 43 69.8
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 5.3e-08 62.0 40 75.0
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 5.3e-08 62.0 39 74.4
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 7.0e-08 61.6 41 70.7
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 7.0e-08 61.6 63 55.6
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 9.1e-08 61.2 39 74.4
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 1.2e-07 60.8 39 74.4
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.2e-07 60.8 37 75.7
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 1.6e-07 60.5 47 68.1
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 2.0e-07 60.1 62 51.6
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 2.0e-07 60.1 39 76.9
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 2.0e-07 60.1 41 68.3
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 2.6e-07 59.7 40 67.5
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 7.7e-07 58.2 47 59.6
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 7.7e-07 58.2 38 71.1
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 7.7e-07 58.2 38 71.1
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.0e-06 57.8 40 70.0
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 1.0e-06 57.8 35 82.9
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 1.3e-06 57.4 42 71.4
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 1.3e-06 57.4 59 52.5
CAN.G438.117 Capsicum annuum HOM05D005975 ORTHO05D007373 1.7e-06 57.0 38 68.4
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 2.2e-06 56.6 38 68.4
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 8.5e-06 54.7 33 75.8


User provided reference genes

Program Settings