Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 2.8e-169 598.6 318 100.0
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 7.8e-135 484.2 318 83.0
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 7.8e-119 431.0 315 75.9
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 6.6e-118 427.9 352 67.3
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.1e-115 420.6 315 74.0
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.1e-111 406.4 316 71.2
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.0e-110 404.1 306 69.0
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.5e-109 400.2 315 67.3
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 3.3e-109 399.1 318 67.6
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 7.3e-109 397.9 337 66.8
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 2.8e-108 396.0 318 67.3
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 4.7e-108 395.2 315 67.0
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 2.4e-107 392.9 303 70.0
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 1.5e-106 390.2 307 65.1
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 2.2e-105 386.3 320 67.8
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.1e-104 384.0 332 65.7
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 3.4e-98 362.5 366 57.9
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 1.2e-95 354.0 315 64.8
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.5e-93 346.3 312 59.6
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 5.6e-93 345.1 340 59.4
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 1.4e-91 340.5 314 62.4
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 1.2e-90 337.4 341 58.9
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 1.5e-90 337.0 314 61.8
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.5e-90 337.0 347 57.9
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.2e-89 333.2 315 60.6
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 2.9e-89 332.8 338 59.8
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 3.8e-89 332.4 294 62.2
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 1.1e-88 330.9 346 57.5
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 1.9e-88 330.1 313 59.7
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 7.1e-88 328.2 311 59.8
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 9.3e-88 327.8 303 60.1
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 9.3e-88 327.8 315 60.3
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 2.1e-87 326.6 310 58.4
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 7.9e-87 324.7 316 59.2
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 1.3e-86 323.9 326 60.1
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 1.8e-86 323.6 315 57.8
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.8e-86 323.6 330 58.2
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 8.7e-86 321.2 320 59.1
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.1e-85 320.9 234 73.1
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 7.4e-85 318.2 320 58.1
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 7.4e-85 318.2 321 57.0
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 1.6e-84 317.0 311 57.9
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 8.2e-84 314.7 306 60.8
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.4e-83 313.9 318 56.6
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 1.5e-82 310.5 306 59.8
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 2.0e-82 310.1 318 56.6
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 1.7e-81 307.0 306 59.2
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 2.2e-81 306.6 293 60.1
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 4.9e-81 305.4 314 54.8
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 6.5e-81 305.1 293 59.7
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 8.4e-81 304.7 318 56.3
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 3.2e-80 302.8 319 55.8
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 3.2e-80 302.8 313 56.9
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 4.2e-80 302.4 314 53.8
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 9.3e-80 301.2 318 56.0
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 1.2e-79 300.8 310 55.5
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 6.0e-79 298.5 314 54.8
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 6.0e-79 298.5 260 65.4
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.5e-77 293.1 303 56.1
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 1.3e-76 290.8 301 56.1
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.3e-76 290.8 319 54.5
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 1.6e-76 290.4 317 55.5
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.6e-76 290.4 327 55.0
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 3.7e-76 289.3 341 49.3
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 4.8e-76 288.9 316 55.7
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 6.3e-76 288.5 316 55.1
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 2.6e-74 283.1 316 53.5
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 3.4e-74 282.7 314 51.6
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 1.0e-73 281.2 318 52.2
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 1.0e-73 281.2 301 55.5
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.7e-73 280.4 291 56.7
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 3.8e-73 279.3 321 53.0
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.1e-72 277.7 320 53.8
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 2.5e-72 276.6 319 52.4
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 3.2e-72 276.2 308 53.6
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 9.4e-72 274.6 333 51.7
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 9.4e-72 274.6 300 52.7
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.6e-71 273.9 292 56.5
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 2.7e-71 273.1 303 52.8
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.0e-70 271.2 310 51.0
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.8e-70 270.4 310 51.9
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.3e-70 270.0 315 52.1
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 5.1e-70 268.9 321 52.3
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.5e-69 267.3 315 49.5
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 2.0e-69 266.9 299 51.8
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 1.7e-68 263.8 309 49.5
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 8.2e-68 261.5 296 48.6
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.4e-67 260.8 302 52.6
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.5e-66 257.3 263 55.1
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 2.6e-66 256.5 305 50.5
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.4e-66 256.1 238 57.1
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 2.9e-65 253.1 235 55.7
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 2.9e-65 253.1 360 46.9
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 5.0e-65 252.3 351 45.6
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 3.2e-64 249.6 240 59.6
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 9.4e-64 248.1 239 59.4
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 3.6e-63 246.1 313 46.3
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 6.1e-63 245.4 279 50.5
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.3e-62 243.4 293 48.8
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 8.8e-62 241.5 319 45.5
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.1e-61 241.1 319 47.6
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 9.7e-61 238.0 191 67.5
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.3e-60 237.7 258 51.6
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 2.2e-60 236.9 313 44.7
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 2.8e-60 236.5 313 44.7
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 2.8e-60 236.5 220 59.5
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 2.4e-59 233.4 313 44.4
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 5.3e-59 232.3 316 43.7
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.2e-58 231.1 310 42.9
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 7.7e-58 228.4 310 42.3
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 1.0e-57 228.0 310 42.3
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 1.7e-57 227.3 313 41.9
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.7e-57 227.3 280 49.3
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 1.7e-57 227.3 300 47.7
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 1.4e-56 224.2 313 42.8
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 7.2e-56 221.9 292 45.9
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 9.4e-56 221.5 313 41.5
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.8e-54 217.2 292 49.7
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 1.5e-53 214.2 192 58.9
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 2.0e-53 213.8 311 41.8
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 2.6e-53 213.4 311 41.5
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 9.7e-53 211.5 298 45.0
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 1.3e-52 211.1 306 41.5
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 4.0e-46 189.5 251 48.2
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 4.0e-46 189.5 315 41.3
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 6.3e-44 182.2 248 43.5
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 7.7e-42 175.3 256 41.8
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 6.1e-39 165.6 324 37.3
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 3.0e-38 163.3 295 38.3
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.6e-37 160.2 222 47.3
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.6e-37 160.2 133 61.7
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 3.7e-36 156.4 309 35.6
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 1.2e-31 141.4 218 39.0
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 2.3e-30 137.1 253 34.8
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 1.4e-27 127.9 160 40.6
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 7.0e-27 125.6 261 33.7
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 5.6e-24 115.9 167 42.5
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 9.5e-24 115.2 135 45.2
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 2.3e-22 110.5 149 46.3
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 7.5e-21 105.5 186 36.6
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 4.9e-20 102.8 97 63.9
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 4.9e-20 102.8 65 75.4
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 2.4e-19 100.5 210 31.0
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 4.1e-19 99.8 250 30.0
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 1.2e-18 98.2 241 30.7
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 3.3e-16 90.1 198 31.8
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 1.4e-11 74.7 111 36.0
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 4.1e-11 73.2 181 29.3
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 7.8e-10 68.9 100 45.0
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 3.0e-09 67.0 154 24.7
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 5.1e-09 66.2 84 45.2
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 2.8e-07 60.5 195 26.7


User provided reference genes

Program Settings