Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1993.8 1020 100.0
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1498.8 995 76.8
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1497.3 998 77.0
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1460.7 1027 71.8
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1422.9 994 72.3
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1410.6 992 72.0
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1404.4 1012 72.0
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1404.0 993 71.9
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1402.1 996 72.1
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1401.0 991 70.9
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1397.5 991 72.4
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1392.1 979 71.7
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1390.2 992 71.7
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1379.8 1006 68.9
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1371.3 992 71.9
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1360.1 987 69.8
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1360.1 993 69.8
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1359.0 993 69.3
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1359.0 1043 68.6
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1358.2 1002 70.5
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1357.8 1001 70.3
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1356.7 993 69.1
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1356.3 993 69.0
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1352.8 1002 70.3
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1347.4 1005 69.7
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1328.5 992 68.0
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1323.1 994 67.1
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1305.0 996 67.2
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1298.1 1000 66.7
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1295.8 993 64.5
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1293.5 992 68.4
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1292.3 993 64.4
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1291.6 993 64.5
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1290.4 986 66.1
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1286.2 998 64.6
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1275.8 990 66.1
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1273.5 992 66.7
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1271.9 1014 64.0
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1261.1 991 65.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1251.9 1019 63.8
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1251.1 991 66.0
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1249.6 1019 62.8
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1249.2 875 72.5
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1249.2 990 63.2
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1247.3 990 65.6
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1244.6 993 65.2
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1243.8 990 64.0
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1240.7 991 63.7
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1239.9 1018 62.4
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1237.6 998 62.6
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1237.2 994 63.4
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1236.5 1015 63.3
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1236.1 990 63.6
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1228.0 993 62.6
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1226.5 1015 64.0
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1225.3 990 63.2
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1224.5 989 62.8
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1218.4 1020 62.1
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1215.7 992 62.5
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1204.1 997 62.1
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1194.5 979 62.5
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1191.0 983 63.5
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1184.5 1028 60.1
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1182.9 993 60.5
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1176.8 1021 59.7
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1169.1 954 63.6
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1149.0 998 59.3
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1148.7 997 59.0
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1127.9 1003 58.2
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1117.8 998 57.4
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1116.7 999 57.8
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 0.0e+00 1114.8 854 68.9
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 0.0e+00 1113.2 999 57.6
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1112.8 998 60.3
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1108.6 998 57.7
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1104.4 998 57.7
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 0.0e+00 1102.0 1006 57.8
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 0.0e+00 1100.5 1007 58.8
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1090.5 999 57.2
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1089.3 1002 56.7
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 0.0e+00 1086.2 874 62.7
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 0.0e+00 1082.8 1018 56.3
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 0.0e+00 1079.3 1018 57.8
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 0.0e+00 1077.4 968 58.7
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 9.0e-310 1067.0 1000 55.1
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 1.5e-309 1066.2 1005 57.4
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 2.7e-306 1055.4 995 57.9
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 6.3e-295 1017.7 999 54.2
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 2.6e-280 969.1 989 50.9
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 8.2e-279 964.1 991 51.6
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.0e-273 947.2 775 63.7
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.0e-272 943.0 1005 51.6
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 8.2e-271 937.6 728 64.1
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.2e-248 864.0 675 69.3
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.9e-244 849.0 563 74.2
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.8e-202 709.9 660 56.7
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.8e-202 709.9 663 56.7
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.3e-194 684.5 621 58.0
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.7e-191 674.1 566 64.7
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.0e-164 585.1 984 37.5
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 5.2e-156 556.2 1001 36.7
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 1.4e-148 531.6 347 77.2
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 4.4e-147 526.6 533 55.3
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 2.3e-140 504.2 902 37.4
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 9.8e-123 445.7 370 60.3
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 4.9e-106 390.2 328 65.5
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 6.6e-103 379.8 1148 28.3
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.6e-99 367.9 429 46.4
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 4.2e-97 360.5 1156 28.1
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.3e-82 312.4 345 49.9
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 2.5e-78 298.1 266 60.9
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 3.8e-66 257.7 561 34.4
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.1e-57 229.6 193 62.2
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.9e-49 202.2 146 71.2
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 5.9e-43 180.6 207 50.2
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 2.5e-41 175.3 148 64.9
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 9.4e-41 173.3 149 55.0
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.1e-33 149.8 195 44.6
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 1.8e-28 132.5 155 49.7
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 3.5e-27 128.3 423 27.2
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.3e-26 125.6 103 62.1
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.8e-24 118.6 128 50.0
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.8e-24 118.6 84 65.5
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 3.0e-23 115.2 145 42.1
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 3.4e-22 111.7 111 51.4
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 8.3e-21 107.1 77 64.9
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.1e-20 105.1 77 63.6
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 5.4e-20 104.4 221 36.7
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 2.7e-19 102.1 64 75.0
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.5e-19 101.3 103 48.5
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 1.2e-16 93.2 64 71.9
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.5e-14 86.3 72 58.3
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.6e-14 85.5 60 61.7
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.6e-14 85.5 60 61.7
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.3e-10 73.2 157 31.2
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 2.3e-10 72.4 37 83.8
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 3.0e-10 72.0 155 35.5
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 3.6e-08 65.1 786 21.5
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.2e-07 61.2 33 81.8
Os02g0600000 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.2e-06 60.1 48 60.4
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 7.5e-06 57.4 52 53.8


User provided reference genes

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