Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38362 Davidia involucrata HOM05D006658 ORTHO05D008515 9.2e-215 750.0 386 100.0
vmacro15292 Vaccinium macrocarpon HOM05D006658 ORTHO05D008515 8.8e-157 557.4 383 76.0
Rhsim02G0017700 Rhododendron simsii HOM05D006658 ORTHO05D008515 1.7e-152 543.1 372 75.8
Actinidia00076 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.1e-150 536.2 384 72.9
TAR365G0289 Trochodendron aralioides HOM05D006658 ORTHO05D008515 2.6e-148 529.3 392 71.4
GSVIVG01017866001 Vitis vinifera HOM05D006658 ORTHO05D008515 2.9e-144 515.8 395 69.9
Cfa015553 Carpinus fangiana HOM05D006658 ORTHO05D008515 6.5e-144 514.6 387 71.1
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 2.5e-143 512.7 384 71.1
QL06p005937 Quercus lobata HOM05D006658 ORTHO05D008515 9.4e-143 510.8 388 70.6
Cc03_g02920 Coffea canephora HOM05D006658 ORTHO05D008515 1.4e-141 506.9 393 67.7
CiPaw.02G090200 Carya illinoinensis HOM05D006658 ORTHO05D008515 1.5e-140 503.4 386 69.7
Potri.008G199900 Populus trichocarpa HOM05D006658 ORTHO05D008515 2.0e-140 503.1 379 70.2
Ciclev10005116m.g Citrus clementina HOM05D006658 ORTHO05D008515 2.7e-137 492.7 391 67.5
Manes.15G021400 Manihot esculenta HOM05D006658 ORTHO05D008515 7.7e-137 491.1 374 70.3
Prupe.1G148500 Prunus persica HOM05D006658 ORTHO05D008515 1.3e-136 490.3 376 68.6
TWI53G0915 Tripterygium wilfordii HOM05D006658 ORTHO05D008515 2.2e-136 489.6 385 70.1
Sabra08G0161000 Salix brachista HOM05D006658 ORTHO05D008515 2.9e-136 489.2 391 68.0
MD13G1180000 Malus domestica HOM05D006658 ORTHO05D008515 5.0e-136 488.4 378 68.3
Cpa.g.sc16.52 Carica papaya HOM05D006658 ORTHO05D008515 1.1e-135 487.3 379 69.1
Atru.chr4.2671 Acer truncatum HOM05D006658 ORTHO05D008515 1.5e-135 486.9 383 68.4
CANSAT78G1897 Cannabis sativa HOM05D006658 ORTHO05D008515 9.4e-135 484.2 382 67.8
Lsat_1_v5_gn_5_165480 Lactuca sativa HOM05D006658 ORTHO05D008515 2.1e-134 483.0 392 66.1
Medtr2g021220 Medicago truncatula HOM05D006658 ORTHO05D008515 1.8e-133 479.9 376 66.2
Gorai.006G218300 Gossypium raimondii HOM05D006658 ORTHO05D008515 2.3e-133 479.6 326 75.5
HanXRQChr12g0359491 Helianthus annuus HOM05D006658 ORTHO05D008515 2.3e-133 479.6 382 66.5
Glyma.15G101900 Glycine max HOM05D006658 ORTHO05D008515 4.0e-133 478.8 381 65.6
VMungo0540G0090 Vigna mungo HOM05D006658 ORTHO05D008515 4.0e-133 478.8 345 71.3
FAN12G0854 Fragaria x ananassa HOM05D006658 ORTHO05D008515 5.2e-133 478.4 382 65.7
FvH4_4g14170 Fragaria vesca HOM05D006658 ORTHO05D008515 6.8e-133 478.0 382 66.0
Thecc.04G218900 Theobroma cacao HOM05D006658 ORTHO05D008515 8.8e-133 477.6 390 67.4
arahy.Tifrunner.gnm1.ann1.V9Y9T8 Arachis hypogaea HOM05D006658 ORTHO05D008515 1.5e-132 476.9 391 65.0
MBI17_g29609_MAGBIO Magnolia biondii HOM05D006658 ORTHO05D008515 1.5e-132 476.9 394 67.0
PSO170G4721 Papaver somniferum HOM05D006658 ORTHO05D008515 1.5e-132 476.9 386 66.6
RcHm_v2.0_Chr4g0419051 Rosa chinensis HOM05D006658 ORTHO05D008515 2.6e-132 476.1 375 66.1
Eucgr.E03351 Eucalyptus grandis HOM05D006658 ORTHO05D008515 3.4e-132 475.7 347 70.0
MELO3C021391.2 Cucumis melo HOM05D006658 ORTHO05D008515 1.3e-131 473.8 332 71.7
Phvul.006G155900 Phaseolus vulgaris HOM05D006658 ORTHO05D008515 1.8e-130 469.9 379 65.7
Sed0019307 Sechium edule HOM05D006658 ORTHO05D008515 4.1e-130 468.8 332 71.1
TPR.G28916 Trifolium pratense HOM05D000887 ORTHO05D000908 4.1e-130 468.8 383 64.5
CsaV3_6G005460 Cucumis sativus L. HOM05D006658 ORTHO05D008515 5.4e-130 468.4 331 71.0
Aqoxy2G03225 Aquilegia oxysepala HOM05D006658 ORTHO05D008515 2.0e-129 466.5 388 64.9
arahy.Tifrunner.gnm1.ann1.Q3CYV3 Arachis hypogaea HOM05D006658 ORTHO05D008515 3.5e-129 465.7 357 67.5
Ca_00605_v3 Cicer arietinum L. HOM05D000887 ORTHO05D000908 4.5e-129 465.3 332 69.9
ClCG06G005690 Citrullus lanatus HOM05D006658 ORTHO05D008515 5.9e-129 464.9 382 64.7
PSO407G0441 Papaver somniferum HOM05D006658 ORTHO05D008515 2.9e-128 462.6 317 74.4
Lalb_Chr15g0087271 Lupinus albus HOM05D006658 ORTHO05D008515 3.2e-127 459.1 382 65.2
Migut.N00139 Erythranthe guttata HOM05D006658 ORTHO05D008515 4.2e-127 458.8 385 63.9
Lj6g0017983 Lotus japonicus HOM05D006658 ORTHO05D008515 4.2e-127 458.8 326 70.9
Nitab4.5_0003070g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008515 1.6e-126 456.8 425 59.1
Sc13g0003830 Simmondsia chinensis HOM05D006658 ORTHO05D008515 6.1e-126 454.9 366 66.1
FAN07G2752 Fragaria x ananassa HOM05D006658 ORTHO05D008515 8.0e-126 454.5 413 60.0
DCAR_027140 Daucus carota HOM05D006658 ORTHO05D008515 1.0e-125 454.1 384 65.6
MSTRG.24762 Avicennia marina HOM05D006658 ORTHO05D008515 2.3e-125 453.0 337 68.2
PGR065G0004 Punica granatum HOM05D006658 ORTHO05D008515 4.0e-125 452.2 333 69.4
Sopen01g032090 Solanum pennellii HOM05D006658 ORTHO05D008515 2.0e-124 449.9 391 62.4
Carub.0003s2162 Capsella rubella HOM05D006658 ORTHO05D008515 3.4e-124 449.1 396 61.9
Solyc01g080300.4 Solanum lycopersicum HOM05D006658 ORTHO05D008515 3.4e-124 449.1 391 62.1
THA.LOC104820222 Tarenaya hassleriana HOM05D006658 ORTHO05D008515 3.4e-124 449.1 350 67.7
AL3G35700 Arabidopsis lyrata HOM05D006658 ORTHO05D008515 1.3e-123 447.2 379 63.3
SalBow5G3198 Salvia bowleyana HOM05D006658 ORTHO05D008515 2.2e-123 446.4 334 68.0
CARHR097540 Cardamine hirsuta HOM05D006658 ORTHO05D008515 2.8e-123 446.0 332 69.6
PGSC0003DMG400004353 Solanum tuberosum HOM05D006658 ORTHO05D008515 3.7e-123 445.7 391 61.4
AT3G21580 Arabidopsis thaliana HOM05D006658 ORTHO05D008515 8.3e-123 444.5 391 61.9
CAN.G522.10 Capsicum annuum HOM05D006658 ORTHO05D008515 8.3e-123 444.5 389 62.7
BcaC01g03498 Brassica carinata HOM05D006658 ORTHO05D008515 5.4e-122 441.8 379 63.3
Thhalv10020897m.g Eutrema salsugineum HOM05D006658 ORTHO05D008515 1.6e-121 440.3 390 62.3
Sp3g19610 Schrenkiella parvula HOM05D006658 ORTHO05D008515 7.8e-121 438.0 388 61.9
A03p42320 Brassica napus HOM05D006658 ORTHO05D008515 1.0e-120 437.6 366 64.8
BraA03t13384Z Brassica rapa HOM05D006658 ORTHO05D008515 1.0e-120 437.6 366 64.8
SGA_v2.0_scaffold107G30765 Striga asiatica HOM05D006658 ORTHO05D008515 3.8e-120 435.6 333 66.7
Nn4g26153 Nelumbo nucifera HOM05D006658 ORTHO05D008515 5.0e-120 435.3 344 66.6
BcaB04g19174 Brassica carinata HOM05D006658 ORTHO05D008515 1.1e-119 434.1 384 62.0
Peaxi162Scf00095g00723 Petunia axillaris HOM05D006658 ORTHO05D008515 1.9e-119 433.3 386 61.4
BolC3t17462H Brassica oleracea HOM05D006658 ORTHO05D008515 4.3e-119 432.2 379 62.3
C03p51780 Brassica napus HOM05D006658 ORTHO05D008515 9.5e-119 431.0 379 62.0
HPP92_001401 Vanilla planifolia HOM05D006658 ORTHO05D008515 2.1e-118 429.9 309 71.2
COL.COLO4_21620 Corchorus olitorius HOM05D006658 ORTHO05D008515 8.0e-118 427.9 391 62.4
Aa31sc174G10 Aethionema arabicum HOM05D006658 ORTHO05D008515 1.4e-117 427.2 364 61.8
Os05g0400600 Oryza sativa ssp. japonica HOM05D006658 ORTHO05D008515 1.4e-117 427.2 316 67.4
Duzib212G0844 Durio zibethinus HOM05D006658 ORTHO05D008515 1.5e-116 423.7 320 69.7
Zm00001eb346810 Zea mays HOM05D006658 ORTHO05D008515 1.2e-113 414.1 319 66.1
ATR0626G018 Amborella trichopoda HOM05D006658 ORTHO05D007095 1.3e-112 410.6 300 69.7
EL10Ac4g08937 Beta vulgaris HOM05D006658 ORTHO05D008515 1.7e-112 410.2 334 66.5
Gohir.D09G194900 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.1e-111 407.5 326 67.2
Gohir.A09G200700 Gossypium hirsutum HOM05D006658 ORTHO05D008515 1.2e-110 404.1 326 67.2
Psat5g176560 Pisum sativum HOM05D006658 ORTHO05D008515 1.3e-107 394.0 334 62.9
SEGI_40702 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 3.2e-106 389.4 329 59.3
FAN22G2256 Fragaria x ananassa HOM05D006658 ORTHO05D008515 2.7e-105 386.3 256 74.6
PGR004G0022 Punica granatum HOM05D006658 ORTHO05D008515 1.5e-103 380.6 275 69.1
CSS0022396 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 8.9e-101 371.3 251 76.9
RcHm_v2.0_Chr2g0086241 Rosa chinensis HOM05D006658 ORTHO05D008515 2.2e-99 366.7 319 61.1
CDE02G1914 Ceratophyllum demersum HOM05D006658 ORTHO05D008515 3.7e-99 365.9 321 60.4
Ah.06g191650 Amaranthus hybridus HOM05D006658 ORTHO05D008515 2.7e-97 359.8 316 62.3
Lj3A803G20 Lonicera japonica HOM05D006658 ORTHO05D008515 2.5e-95 353.2 317 60.9
Mapoly0015s0173 Marchantia polymorpha HOM05D006658 ORTHO05D008515 4.7e-94 349.0 329 54.4
AUR62004779 Chenopodium quinoa HOM05D006658 ORTHO05D008515 6.2e-94 348.6 370 54.6
ECA234G3592 Erigeron canadensis HOM05D006658 ORTHO05D008515 2.0e-92 343.6 250 71.6
Glyma.13G210900 Glycine max HOM05D006658 ORTHO05D008515 3.2e-90 336.3 310 59.7
SMO361G0230 Selaginella moellendorffii HOM05D006658 ORTHO05D008515 5.4e-90 335.5 375 49.1
Pp3c16_5660 Physcomitrium patens HOM05D006658 ORTHO05D008515 6.0e-89 332.0 302 54.3
unitig_61.g26008 Utricularia gibba HOM05D006658 ORTHO05D008515 3.9e-88 329.3 325 53.2
RcHm_v2.0_Chr5g0064291 Rosa chinensis HOM05D006658 ORTHO05D008515 2.1e-81 307.0 197 76.6
AagrBONN_evm.TU.Sc2ySwM_228.2900 Anthoceros agrestis HOM05D006670 ORTHO05D008715 1.1e-77 294.7 318 46.5
AUR62003399 Chenopodium quinoa HOM05D006658 ORTHO05D008515 7.1e-74 282.0 270 59.3
CDE09G1086 Ceratophyllum demersum HOM05D002356 ORTHO05D002546 9.3e-74 281.6 256 57.8
Psat1g186040 Pisum sativum HOM05D006658 ORTHO05D008515 3.9e-72 276.2 188 73.4
RcHm_v2.0_Chr5g0045591 Rosa chinensis HOM05D006658 ORTHO05D008515 5.3e-69 265.8 178 74.2
CSS0004357 Camellia sinensis var. sinensis HOM05D006658 ORTHO05D008515 3.4e-68 263.1 227 63.4
Nitab4.5_0000059g0030 Nicotiana tabacum HOM05D006658 ORTHO05D008979 1.1e-66 258.1 348 47.4
Hund26050 Selenicereus undatus HOM05D006658 ORTHO05D008515 9.3e-66 255.0 253 58.1
Manes.07G121800 Manihot esculenta HOM05D006658 ORTHO05D008515 6.2e-62 242.3 159 77.4
Nn1g02127 Nelumbo nucifera HOM05D006658 ORTHO05D008515 1.7e-59 234.2 200 64.5
Cre12.g533950 Chlamydomonas reinhardtii HOM05D006658 ORTHO05D008515 3.4e-52 209.9 310 38.7
PRCOL_00004089 Prasinoderma coloniale HOM05D006658 ORTHO05D008515 2.0e-44 184.1 283 37.8
MCO01G250 Micromonas commoda HOM05D006658 ORTHO05D008515 2.3e-40 170.6 290 33.8
SEGI_22040 Sequoiadendron giganteum HOM05D006658 ORTHO05D008515 2.3e-40 170.6 135 64.4
Peaxi162Scf00095g00724 Petunia axillaris HOM05D006658 ORTHO05D008515 3.3e-31 140.2 129 59.7
Psat2g070960 Pisum sativum HOM05D006658 ORTHO05D008515 5.7e-31 139.4 235 40.4
HPP92_001340 Vanilla planifolia HOM05D006658 ORTHO05D008515 9.7e-31 138.7 105 66.7
Oeu023652.1 Olea europaea HOM05D006658 ORTHO05D008515 6.5e-27 125.9 226 42.9
Actinidia32371 Actinidia chinensis HOM05D006658 ORTHO05D008515 2.0e-23 114.4 84 75.0
Actinidia08452 Actinidia chinensis HOM05D006658 ORTHO05D008515 6.3e-22 109.4 84 70.2
Oeu037664.1 Olea europaea HOM05D006658 ORTHO05D008515 2.0e-20 104.4 121 50.4
HanXRQChr09g0256171 Helianthus annuus HOM05D006658 ORTHO05D008515 3.7e-14 83.6 62 64.5
HanXRQChr04g0123631 Helianthus annuus HOM05D034347 ORTHO05D227534 4.0e-08 63.5 46 71.7
Medtr2g021155 Medicago truncatula HOM05D000007 ORTHO05D000017 2.2e-06 57.8 58 51.7


User provided reference genes

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