Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38340 Davidia involucrata HOM05D004069 ORTHO05D004699 9.2e-74 280.0 132 100.0
Dinv44442 Davidia involucrata HOM05D004069 ORTHO05D004699 2.1e-41 172.6 107 77.6
Cc03_g02560 Coffea canephora HOM05D004069 ORTHO05D004699 7.2e-34 147.5 104 67.3
vmacro15276 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.5e-31 139.8 66 92.4
Actinidia32378 Actinidia chinensis HOM05D004069 ORTHO05D004699 1.9e-31 139.4 66 90.9
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 2.5e-31 139.0 92 70.7
CSS0012120 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 1.3e-30 136.7 103 63.1
CsaV3_1G037430 Cucumis sativus L. HOM05D004069 ORTHO05D004699 1.3e-30 136.7 103 62.1
Actinidia00062 Actinidia chinensis HOM05D004069 ORTHO05D004699 2.8e-30 135.6 110 56.4
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 3.7e-30 135.2 103 62.1
CAN.G981.42 Capsicum annuum HOM05D004069 ORTHO05D004699 3.7e-30 135.2 105 60.0
GSVIVG01017834001 Vitis vinifera HOM05D004069 ORTHO05D004699 3.7e-30 135.2 103 62.1
Hma1.2p1_0643F.1_g194630 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 6.3e-30 134.4 66 89.4
Cfa015517 Carpinus fangiana HOM05D004069 ORTHO05D004699 8.2e-30 134.0 103 61.2
HanXRQChr13g0410171 Helianthus annuus HOM05D004069 ORTHO05D004699 8.2e-30 134.0 66 89.4
Nitab4.5_0001714g0140 Nicotiana tabacum HOM05D004069 ORTHO05D004699 8.2e-30 134.0 101 62.4
Nitab4.5_0009882g0010 Nicotiana tabacum HOM05D004069 ORTHO05D004699 8.2e-30 134.0 101 62.4
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 1.1e-29 133.7 103 61.2
Hma1.2p1_0078F.1_g040910 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.1e-29 133.7 102 62.7
Nn4g26079 Nelumbo nucifera HOM05D004069 ORTHO05D004699 1.1e-29 133.7 100 62.0
Peaxi162Scf00620g00918 Petunia axillaris HOM05D004069 ORTHO05D004699 1.4e-29 133.3 64 89.1
Hma1.2p1_1671F.1_g296710 Hydrangea macrophylla HOM05D004069 ORTHO05D004699 1.8e-29 132.9 102 62.7
TWI73G0788 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 1.8e-29 132.9 103 61.2
Solyc08g080240.3 Solanum lycopersicum HOM05D004069 ORTHO05D004699 2.4e-29 132.5 101 61.4
Sopen08g028590 Solanum pennellii HOM05D004069 ORTHO05D004699 2.4e-29 132.5 101 61.4
TWI09G1514 Tripterygium wilfordii HOM05D004069 ORTHO05D004699 2.4e-29 132.5 103 61.2
TAR633G1540 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.4e-29 132.5 62 91.9
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 4.1e-29 131.7 92 66.3
ECA240G0933 Erigeron canadensis HOM05D004069 ORTHO05D004699 4.1e-29 131.7 103 61.2
Migut.F02022 Erythranthe guttata HOM05D004069 ORTHO05D004699 4.1e-29 131.7 96 64.6
Eucgr.H03663 Eucalyptus grandis HOM05D004069 ORTHO05D004699 4.1e-29 131.7 103 60.2
HanXRQChr03g0079731 Helianthus annuus HOM05D004069 ORTHO05D004699 4.1e-29 131.7 66 87.9
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 4.1e-29 131.7 113 57.5
PGSC0003DMG400022739 Solanum tuberosum HOM05D004069 ORTHO05D004699 4.1e-29 131.7 101 60.4
Sc11g0003950 Simmondsia chinensis HOM05D004069 ORTHO05D004699 5.3e-29 131.3 97 64.9
Sed0000717 Sechium edule HOM05D004069 ORTHO05D004699 6.9e-29 131.0 111 55.9
HanXRQChr03g0080011 Helianthus annuus HOM05D004069 ORTHO05D004699 9.1e-29 130.6 66 84.8
Prupe.1G144300 Prunus persica HOM05D004069 ORTHO05D004699 9.1e-29 130.6 62 91.9
QL06p006731 Quercus lobata HOM05D004069 ORTHO05D004699 9.1e-29 130.6 101 60.4
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 1.2e-28 130.2 92 65.2
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 1.2e-28 130.2 108 56.5
MD10G1048000 Malus domestica HOM05D004069 ORTHO05D004699 1.2e-28 130.2 62 90.3
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.2e-28 130.2 103 60.2
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.2e-28 130.2 103 58.3
Lsat_1_v5_gn_5_49720 Lactuca sativa HOM05D004069 ORTHO05D004699 1.5e-28 129.8 63 88.9
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 2.0e-28 129.4 112 57.1
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 2.6e-28 129.0 65 84.6
Lsat_1_v5_gn_5_51221 Lactuca sativa HOM05D004069 ORTHO05D004699 2.6e-28 129.0 66 83.3
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.4e-28 128.6 103 59.2
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 3.4e-28 128.6 103 60.2
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 4.5e-28 128.3 103 58.3
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 4.5e-28 128.3 103 59.2
Hund07638 Selenicereus undatus HOM05D004069 ORTHO05D004699 4.5e-28 128.3 65 83.1
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 5.9e-28 127.9 108 55.6
Nn3g21235 Nelumbo nucifera HOM05D004069 ORTHO05D004699 5.9e-28 127.9 101 58.4
Rhsim02G0014600 Rhododendron simsii HOM05D004069 ORTHO05D004699 5.9e-28 127.9 66 83.3
RcHm_v2.0_Chr4g0420511 Rosa chinensis HOM05D004069 ORTHO05D004699 5.9e-28 127.9 65 84.6
Oeu007709.1 Olea europaea HOM05D004069 ORTHO05D004699 7.7e-28 127.5 65 83.1
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 7.7e-28 127.5 103 59.2
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 7.7e-28 127.5 117 54.7
VMungo0331G0279 Vigna mungo HOM05D004069 ORTHO05D004699 7.7e-28 127.5 103 59.2
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.0e-27 127.1 103 58.3
Sed0022789 Sechium edule HOM05D004069 ORTHO05D004699 1.0e-27 127.1 62 87.1
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 1.7e-27 126.3 66 81.8
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 1.7e-27 126.3 112 57.1
CiPaw.02G087900 Carya illinoinensis HOM05D004069 ORTHO05D004699 2.2e-27 125.9 103 57.3
MD05G1041600 Malus domestica HOM05D004069 ORTHO05D004699 2.2e-27 125.9 62 87.1
MD13G1175600 Malus domestica HOM05D004069 ORTHO05D004699 2.9e-27 125.6 62 85.5
AL3G17240 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 3.8e-27 125.2 103 57.3
AT3G06310 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 3.8e-27 125.2 103 57.3
BraA03t10237Z Brassica rapa HOM05D004069 ORTHO05D004699 3.8e-27 125.2 113 54.9
Aqoxy2G03156 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 5.0e-27 124.8 64 81.2
DCAR_002434 Daucus carota HOM05D004069 ORTHO05D004699 5.0e-27 124.8 62 87.1
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 6.5e-27 124.4 103 56.3
FvH4_4g16930 Fragaria vesca HOM05D004069 ORTHO05D004699 6.5e-27 124.4 65 83.1
FAN07G2596 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.5e-27 124.4 65 83.1
FAN12G1790 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.5e-27 124.4 65 83.1
FAN12G4073 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.5e-27 124.4 65 83.1
FAN22G1255 Fragaria x ananassa HOM05D004069 ORTHO05D004699 6.5e-27 124.4 65 83.1
MSTRG.9205 Avicennia marina HOM05D004069 ORTHO05D004699 8.5e-27 124.0 63 82.5
AL6G30150 Arabidopsis lyrata HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
AT5G18800 Arabidopsis thaliana HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
BcaB01g05275 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
BcaC03g13618 Brassica carinata HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
A03p09140 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
A10p20810 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
C03p10670 Brassica napus HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
BolC2t06916H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
BolC3t13543H Brassica oleracea HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
BraA10t44146Z Brassica rapa HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
Carub.0006s1710 Capsella rubella HOM05D004069 ORTHO05D004699 1.1e-26 123.6 103 56.3
MD16G1177400 Malus domestica HOM05D004069 ORTHO05D004699 1.1e-26 123.6 62 83.9
ATR0208G034 Amborella trichopoda HOM05D004069 ORTHO05D004699 1.4e-26 123.2 100 59.0
Ciclev10006197m.g Citrus clementina HOM05D004069 ORTHO05D004699 1.4e-26 123.2 123 52.0
Psat4g149640 Pisum sativum HOM05D004069 ORTHO05D004699 1.4e-26 123.2 109 54.1
BcaB01g04889 Brassica carinata HOM05D004069 ORTHO05D004699 1.9e-26 122.9 100 57.0
Glyma.01G145000 Glycine max HOM05D004069 ORTHO05D004699 1.9e-26 122.9 103 56.3
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 1.9e-26 122.9 103 55.3
unitig_46.g18583 Utricularia gibba HOM05D004069 ORTHO05D004699 1.9e-26 122.9 104 54.8
VMungo0331G0995 Vigna mungo HOM05D004069 ORTHO05D004699 1.9e-26 122.9 103 56.3
BcaB08g36643 Brassica carinata HOM05D004069 ORTHO05D004699 3.2e-26 122.1 103 55.3
BraA02t05469Z Brassica rapa HOM05D004069 ORTHO05D004699 3.2e-26 122.1 103 55.3
CARHR194200 Cardamine hirsuta HOM05D004069 ORTHO05D004699 3.2e-26 122.1 103 55.3
Thhalv10015085m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.2e-26 122.1 103 55.3
FAN17G0096 Fragaria x ananassa HOM05D004069 ORTHO05D004699 3.2e-26 122.1 65 81.5
Lj3g0025312 Lotus japonicus HOM05D004069 ORTHO05D004699 3.2e-26 122.1 103 56.3
Medtr8g035900 Medicago truncatula HOM05D004069 ORTHO05D004699 3.2e-26 122.1 103 56.3
Sp6g25590 Schrenkiella parvula HOM05D004069 ORTHO05D004699 3.2e-26 122.1 103 55.3
C09p57690 Brassica napus HOM05D004069 ORTHO05D004699 4.2e-26 121.7 103 54.4
TPR.G36608 Trifolium pratense HOM05D004069 ORTHO05D004699 4.2e-26 121.7 109 54.1
Lalb_Chr07g0189611 Lupinus albus HOM05D004069 ORTHO05D004699 5.5e-26 121.3 103 54.4
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 7.2e-26 120.9 103 55.3
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 7.2e-26 120.9 92 60.9
Glyma.03G021800 Glycine max HOM05D004069 ORTHO05D004699 9.4e-26 120.6 103 55.3
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 9.4e-26 120.6 100 57.0
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 9.4e-26 120.6 103 56.3
BcaC04g18646 Brassica carinata HOM05D004069 ORTHO05D004699 1.2e-25 120.2 103 53.4
BolC9t58640H Brassica oleracea HOM05D004069 ORTHO05D004699 1.2e-25 120.2 103 53.4
Lalb_Chr13g0291661 Lupinus albus HOM05D004069 ORTHO05D004699 1.6e-25 119.8 103 54.4
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 2.1e-25 119.4 103 54.4
Phvul.010G048500 Phaseolus vulgaris HOM05D004069 ORTHO05D004699 2.1e-25 119.4 103 54.4
TAR362G0867 Trochodendron aralioides HOM05D004069 ORTHO05D004699 2.1e-25 119.4 100 56.0
unitig_37.g12295 Utricularia gibba HOM05D004069 ORTHO05D004699 2.1e-25 119.4 89 61.8
Aqoxy5G00598 Aquilegia oxysepala HOM05D004069 ORTHO05D004699 2.7e-25 119.0 108 53.7
CDE09G1375 Ceratophyllum demersum HOM05D004069 ORTHO05D004699 2.7e-25 119.0 104 53.8
PGR031G3162 Punica granatum HOM05D004069 ORTHO05D004699 3.6e-25 118.6 125 48.8
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 3.6e-25 118.6 102 57.8
arahy.Tifrunner.gnm1.ann1.EYX6XU Arachis hypogaea HOM05D004069 ORTHO05D004699 6.1e-25 117.9 103 54.4
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 6.1e-25 117.9 100 55.0
arahy.Tifrunner.gnm1.ann1.J8E67M Arachis hypogaea HOM05D004069 ORTHO05D004699 7.9e-25 117.5 103 54.4
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 7.9e-25 117.5 100 54.0
PSO832G3814 Papaver somniferum HOM05D004069 ORTHO05D004699 7.9e-25 117.5 63 79.4
A02p05100 Brassica napus HOM05D000415 ORTHO05D002707 1.4e-24 116.7 98 56.1
C02p10150 Brassica napus HOM05D000415 ORTHO05D002707 1.4e-24 116.7 98 56.1
PSO210G4490 Papaver somniferum HOM05D004069 ORTHO05D004699 1.4e-24 116.7 63 77.8
SEGI_25177 Sequoiadendron giganteum HOM05D004069 ORTHO05D004699 1.4e-24 116.7 62 75.8
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.8e-24 116.3 62 79.0
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.0e-24 115.5 103 52.4
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 3.0e-24 115.5 103 52.4
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.9e-24 115.2 65 73.8
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 3.9e-24 115.2 65 73.8
Thecc.04G274500 Theobroma cacao HOM05D004069 ORTHO05D004699 3.9e-24 115.2 65 73.8
Duzib151G0641 Durio zibethinus HOM05D004069 ORTHO05D004699 5.1e-24 114.8 65 73.8
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 8.8e-24 114.0 65 72.3
Duzib212G0467 Durio zibethinus HOM05D004069 ORTHO05D004699 1.1e-23 113.6 100 53.0
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.5e-23 113.2 106 52.8
Gohir.A10G103600 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.6e-23 112.5 103 51.5
Rhsim04G0214300 Rhododendron simsii HOM05D004069 ORTHO05D004699 7.4e-23 110.9 171 39.8
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 6.3e-22 107.8 65 67.7
PGSC0003DMG400012496 Solanum tuberosum HOM05D004069 ORTHO05D004699 1.2e-20 103.6 62 75.8
Mapoly0119s0025 Marchantia polymorpha HOM05D004069 ORTHO05D004699 4.5e-20 101.7 63 65.1
Pp3c3_33480 Physcomitrium patens HOM05D004069 ORTHO05D004699 5.9e-20 101.3 89 51.7
Pp3c4_6220 Physcomitrium patens HOM05D004069 ORTHO05D004699 1.7e-19 99.8 63 63.5
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 2.9e-19 99.0 62 67.7
Pp3c10_17050 Physcomitrium patens HOM05D004069 ORTHO05D004699 3.8e-19 98.6 63 63.5
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 1.6e-17 93.2 60 61.7
Solyc08g007805.1 Solanum lycopersicum HOM05D004069 ORTHO05D004699 3.6e-17 92.0 54 74.1
ClCG03G006350 Citrullus lanatus HOM05D004069 ORTHO05D004699 6.1e-17 91.3 47 80.9
Haze_01035 Corylus avellana HOM05D004069 ORTHO05D004699 3.9e-16 88.6 83 51.8
MBI18_g15803_MAGBIO Magnolia biondii HOM05D004069 ORTHO05D004699 5.2e-16 88.2 46 80.4
Ah.01g017180 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.5e-15 86.7 55 65.5
CDE02G1037 Ceratophyllum demersum HOM05D003181 ORTHO05D003689 3.1e-13 79.0 82 46.3
THA.LOC104802732 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.2e-12 77.0 76 47.4
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 5.9e-12 74.7 63 49.2
PRCOL_00002240 Prasinoderma coloniale HOM05D004069 ORTHO05D004699 6.1e-09 64.7 79 36.7
CSS0016731 Camellia sinensis var. sinensis HOM05D004069 ORTHO05D004699 2.3e-08 62.8 32 84.4


User provided reference genes

Program Settings