Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38312 Davidia involucrata HOM05D001137 ORTHO05D005066 4.0e-51 204.5 106 100.0
TPR.G1509 Trifolium pratense HOM05D001137 ORTHO05D005066 1.3e-46 189.5 106 91.5
Solyc01g067480.4 Solanum lycopersicum HOM05D001137 ORTHO05D005066 2.2e-46 188.7 106 90.6
Sopen01g029390 Solanum pennellii HOM05D001137 ORTHO05D005066 2.2e-46 188.7 106 90.6
PGSC0003DMG401022673 Solanum tuberosum HOM05D001137 ORTHO05D005066 2.2e-46 188.7 106 90.6
Hma1.2p1_0698F.1_g205450 Hydrangea macrophylla HOM05D001137 ORTHO05D005066 1.5e-45 186.0 100 95.0
Nn4g25962 Nelumbo nucifera HOM05D001137 ORTHO05D005066 1.5e-45 186.0 106 89.6
Medtr2g019860 Medicago truncatula HOM05D001137 ORTHO05D005066 1.2e-44 183.0 100 93.0
Lalb_Chr18g0055631 Lupinus albus HOM05D001137 ORTHO05D005066 2.1e-44 182.2 96 96.9
CARHR194430 Cardamine hirsuta HOM05D001137 ORTHO05D005066 6.1e-44 180.6 105 87.6
Sabra08G0155800 Salix brachista HOM05D001137 ORTHO05D005066 1.0e-43 179.9 95 96.8
Thhalv10012828m.g Eutrema salsugineum HOM05D001137 ORTHO05D005066 1.8e-43 179.1 105 86.7
Nitab4.5_0000644g0060 Nicotiana tabacum HOM05D001137 ORTHO05D005066 2.3e-43 178.7 96 94.8
Nitab4.5_0000829g0190 Nicotiana tabacum HOM05D001137 ORTHO05D005066 2.3e-43 178.7 96 94.8
MELO3C006622.2 Cucumis melo HOM05D001137 ORTHO05D005066 3.0e-43 178.3 96 92.7
CsaV3_3G014290 Cucumis sativus L. HOM05D001137 ORTHO05D005066 3.0e-43 178.3 96 92.7
Psat1g187920 Pisum sativum HOM05D001137 ORTHO05D005066 3.0e-43 178.3 100 92.0
Sed0010501 Sechium edule HOM05D001137 ORTHO05D005066 3.0e-43 178.3 96 92.7
vmacro22477 Vaccinium macrocarpon HOM05D001137 ORTHO05D005066 3.0e-43 178.3 105 85.7
Lsat_1_v5_gn_5_157341 Lactuca sativa HOM05D001137 ORTHO05D005066 5.2e-43 177.6 103 87.4
Sp6g25740 Schrenkiella parvula HOM05D001137 ORTHO05D005066 5.2e-43 177.6 105 85.7
Sed0020296 Sechium edule HOM05D001137 ORTHO05D005066 6.8e-43 177.2 97 90.7
SGA_v2.0_scaffold86G26927 Striga asiatica HOM05D001137 ORTHO05D005066 6.8e-43 177.2 97 92.8
EL10Ac7g16750 Beta vulgaris HOM05D001137 ORTHO05D005066 8.8e-43 176.8 100 90.0
Potri.010G022000 Populus trichocarpa HOM05D001137 ORTHO05D005066 1.2e-42 176.4 94 94.7
AL6G29860 Arabidopsis lyrata HOM05D001137 ORTHO05D005066 2.0e-42 175.6 97 91.8
AT5G18590 Arabidopsis thaliana HOM05D001137 ORTHO05D005066 2.0e-42 175.6 97 91.8
Carub.0006s1687 Capsella rubella HOM05D001137 ORTHO05D005066 2.0e-42 175.6 97 91.8
Manes.15G015400 Manihot esculenta HOM05D001137 ORTHO05D005066 2.0e-42 175.6 97 92.8
Lj6g0014210 Lotus japonicus HOM05D001137 ORTHO05D005066 2.6e-42 175.3 93 95.7
BcaB08g36660 Brassica carinata HOM05D001137 ORTHO05D005066 3.4e-42 174.9 96 92.7
THA.LOC104802721 Tarenaya hassleriana HOM05D001137 ORTHO05D005066 5.7e-42 174.1 95 92.6
SalBow2G1809 Salvia bowleyana HOM05D001137 ORTHO05D005066 9.8e-42 173.3 106 82.1
Potri.008G214900 Populus trichocarpa HOM05D001137 ORTHO05D005066 1.3e-41 172.9 92 96.7
RcHm_v2.0_Chr4g0421431 Rosa chinensis HOM05D001137 ORTHO05D005066 1.7e-41 172.6 92 94.6
Migut.G00190 Erythranthe guttata HOM05D001137 ORTHO05D005066 2.8e-41 171.8 97 89.7
Thecc.04G279600 Theobroma cacao HOM05D001137 ORTHO05D005066 2.8e-41 171.8 90 96.7
MD16G1173400 Malus domestica HOM05D001137 ORTHO05D005066 4.9e-41 171.0 89 96.6
PGR004G0465 Punica granatum HOM05D001137 ORTHO05D005066 6.3e-41 170.6 93 94.6
BcaC04g18664 Brassica carinata HOM05D001137 ORTHO05D005066 1.1e-40 169.9 96 89.6
C09p57890 Brassica napus HOM05D001137 ORTHO05D005066 1.1e-40 169.9 96 89.6
BolC9t58657H Brassica oleracea HOM05D001137 ORTHO05D005066 1.1e-40 169.9 96 89.6
Cc03_g02170 Coffea canephora HOM05D001137 ORTHO05D005066 1.1e-40 169.9 87 98.9
BraA10t44162Z Brassica rapa HOM05D001137 ORTHO05D005066 2.4e-40 168.7 96 88.5
CSS0024935 Camellia sinensis var. sinensis HOM05D001137 ORTHO05D005066 2.4e-40 168.7 103 84.5
Prupe.1G140300 Prunus persica HOM05D001137 ORTHO05D005066 2.4e-40 168.7 88 96.6
GSVIVG01017784001 Vitis vinifera HOM05D001137 ORTHO05D005066 2.4e-40 168.7 87 97.7
Ah.08g211130 Amaranthus hybridus HOM05D001137 ORTHO05D005066 3.1e-40 168.3 93 91.4
arahy.Tifrunner.gnm1.ann1.GKEN9S Arachis hypogaea HOM05D001137 ORTHO05D005066 3.1e-40 168.3 89 96.6
arahy.Tifrunner.gnm1.ann1.HMK9CN Arachis hypogaea HOM05D001137 ORTHO05D005066 3.1e-40 168.3 89 96.6
Gohir.A10G161500 Gossypium hirsutum HOM05D001137 ORTHO05D005066 3.1e-40 168.3 90 94.4
A10p20970 Brassica napus HOM05D001137 ORTHO05D005066 5.4e-40 167.5 96 87.5
Gohir.A09G240400 Gossypium hirsutum HOM05D001137 ORTHO05D005066 5.4e-40 167.5 88 95.5
CiPaw.01G151600 Carya illinoinensis HOM05D001137 ORTHO05D005066 7.0e-40 167.2 88 96.6
DCAR_030541 Daucus carota HOM05D001137 ORTHO05D005066 7.0e-40 167.2 89 94.4
HanXRQChr13g0388221 Helianthus annuus HOM05D001137 ORTHO05D005066 7.0e-40 167.2 97 86.6
COL.COLO4_13912 Corchorus olitorius HOM05D001137 ORTHO05D005066 9.2e-40 166.8 87 96.6
HanXRQChr01g0008171 Helianthus annuus HOM05D001137 ORTHO05D005066 9.2e-40 166.8 94 89.4
Nn3g21353 Nelumbo nucifera HOM05D001137 ORTHO05D005066 9.2e-40 166.8 86 97.7
CANSAT78G1005 Cannabis sativa HOM05D001137 ORTHO05D005066 1.2e-39 166.4 87 97.7
Ca_21531_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.2e-39 166.4 105 79.0
Ca_21540_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.2e-39 166.4 105 79.0
Gohir.D10G168000 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.2e-39 166.4 88 95.5
Gorai.011G187500 Gossypium raimondii HOM05D001137 ORTHO05D005066 1.2e-39 166.4 88 95.5
Lj3C813G4 Lonicera japonica HOM05D001137 ORTHO05D005066 1.2e-39 166.4 94 89.4
CAN.G580.11 Capsicum annuum HOM05D001137 ORTHO05D005066 1.6e-39 166.0 88 94.3
Ciclev10004439m.g Citrus clementina HOM05D001137 ORTHO05D005066 1.6e-39 166.0 87 96.6
ECA248G1543 Erigeron canadensis HOM05D001137 ORTHO05D005066 1.6e-39 166.0 93 89.2
FvH4_4g17510 Fragaria vesca HOM05D001137 ORTHO05D005066 1.6e-39 166.0 86 97.7
FAN07G1649 Fragaria x ananassa HOM05D001137 ORTHO05D005066 1.6e-39 166.0 86 97.7
FAN12G2022 Fragaria x ananassa HOM05D001137 ORTHO05D005066 1.6e-39 166.0 86 97.7
Gohir.D09G241100 Gossypium hirsutum HOM05D001137 ORTHO05D005066 1.6e-39 166.0 87 95.4
TWI73G0988 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 1.6e-39 166.0 93 91.4
Gorai.006G264600 Gossypium raimondii HOM05D001137 ORTHO05D005066 3.5e-39 164.9 87 94.3
Actinidia01942 Actinidia chinensis HOM05D001137 ORTHO05D005066 5.9e-39 164.1 88 94.3
QL06p007709 Quercus lobata HOM05D001137 ORTHO05D005066 5.9e-39 164.1 85 95.3
Actinidia40240 Actinidia chinensis HOM05D001137 ORTHO05D005066 7.8e-39 163.7 86 95.3
AUR62031245 Chenopodium quinoa HOM05D001137 ORTHO05D005066 1.0e-38 163.3 98 83.7
Duzib151G0891 Durio zibethinus HOM05D001137 ORTHO05D005066 1.3e-38 162.9 86 95.3
Peaxi162Scf00386g00616 Petunia axillaris HOM05D001137 ORTHO05D005066 1.3e-38 162.9 87 94.3
Sc13g0003550 Simmondsia chinensis HOM05D001137 ORTHO05D005066 1.7e-38 162.5 87 95.4
Manes.03G192200 Manihot esculenta HOM05D001137 ORTHO05D005066 2.3e-38 162.2 87 94.3
FAN17G0634 Fragaria x ananassa HOM05D001137 ORTHO05D005066 3.8e-38 161.4 87 94.3
MBI18_g01977_MAGBIO Magnolia biondii HOM05D001137 ORTHO05D005066 3.8e-38 161.4 87 93.1
ATR0706G140 Amborella trichopoda HOM05D001137 ORTHO05D005066 5.0e-38 161.0 87 93.1
MSTRG.3938 Avicennia marina HOM05D001137 ORTHO05D005066 5.0e-38 161.0 85 95.3
VMungo0375G0001 Vigna mungo HOM05D001137 ORTHO05D005066 5.0e-38 161.0 89 89.9
Phvul.006G162800 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 8.6e-38 160.2 88 90.9
CDE11G0818 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 1.9e-37 159.1 88 92.0
PSO210G1694 Papaver somniferum HOM05D001137 ORTHO05D005066 4.3e-37 157.9 86 89.5
AUR62027452 Chenopodium quinoa HOM05D001137 ORTHO05D005066 5.6e-37 157.5 93 84.9
Rhsim04G0218100 Rhododendron simsii HOM05D001137 ORTHO05D005066 5.6e-37 157.5 86 89.5
TAR365G1163 Trochodendron aralioides HOM05D001137 ORTHO05D005066 5.6e-37 157.5 85 92.9
TPR.G14624 Trifolium pratense HOM05D001137 ORTHO05D005066 7.3e-37 157.1 88 90.9
Medtr4g119100 Medicago truncatula HOM05D001137 ORTHO05D005066 9.5e-37 156.8 87 92.0
arahy.Tifrunner.gnm1.ann1.S97PWN Arachis hypogaea HOM05D001137 ORTHO05D005066 1.2e-36 156.4 85 89.4
arahy.Tifrunner.gnm1.ann1.SGL9NF Arachis hypogaea HOM05D001137 ORTHO05D005066 1.2e-36 156.4 85 89.4
PSO170G4147 Papaver somniferum HOM05D001137 ORTHO05D005066 1.6e-36 156.0 86 88.4
Glyma.17G024000 Glycine max HOM05D001137 ORTHO05D005066 2.1e-36 155.6 88 90.9
Lj4g0021111 Lotus japonicus HOM05D001137 ORTHO05D005066 2.1e-36 155.6 86 89.5
Hund24915 Selenicereus undatus HOM05D001137 ORTHO05D005066 2.1e-36 155.6 96 83.3
HPP92_015154 Vanilla planifolia HOM05D001137 ORTHO05D005066 2.1e-36 155.6 88 87.5
Duzib212G0615 Durio zibethinus HOM05D001137 ORTHO05D005066 2.8e-36 155.2 86 93.0
Phvul.003G102100 Phaseolus vulgaris HOM05D001137 ORTHO05D005066 6.1e-36 154.1 85 92.9
unitig_748.g8584 Utricularia gibba HOM05D001137 ORTHO05D005066 6.1e-36 154.1 94 81.9
Glyma.07G250400 Glycine max HOM05D001137 ORTHO05D005066 1.0e-35 153.3 89 91.0
Ca_21530_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.4e-35 152.9 87 89.7
Ca_21539_v3 Cicer arietinum L. HOM05D001137 ORTHO05D005066 1.4e-35 152.9 87 89.7
Glyma.13G216400 Glycine max HOM05D001137 ORTHO05D005066 1.4e-35 152.9 88 87.5
VMungo1215G0971 Vigna mungo HOM05D001137 ORTHO05D005066 1.4e-35 152.9 85 91.8
SEGI_27339 Sequoiadendron giganteum HOM05D001137 ORTHO05D005066 6.4e-33 144.1 94 73.4
Zm00001eb410440 Zea mays HOM05D001137 ORTHO05D005066 2.3e-30 135.6 92 76.1
CDE05G0074 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 2.1e-28 129.0 69 95.7
ClCG05G005910 Citrullus lanatus HOM05D001137 ORTHO05D005066 2.8e-28 128.6 74 86.5
Os12g0538800 Oryza sativa ssp. japonica HOM05D001137 ORTHO05D005066 1.8e-27 125.9 82 78.0
Aa31LG11G11030 Aethionema arabicum HOM05D001137 ORTHO05D005066 2.0e-26 122.5 94 71.3
TWI09G0222 Tripterygium wilfordii HOM05D001137 ORTHO05D005066 2.6e-26 122.1 71 88.7
Aqoxy2G03075 Aquilegia oxysepala HOM05D001137 ORTHO05D005066 1.3e-22 109.8 62 88.7
Atru.chr4.2781 Acer truncatum HOM05D001137 ORTHO05D005066 1.7e-22 109.4 64 84.4
arahy.Tifrunner.gnm1.ann1.CD5QST Arachis hypogaea HOM05D001137 ORTHO05D005066 2.5e-21 105.5 69 82.6
AagrBONN_evm.TU.Sc2ySwM_344.1606 Anthoceros agrestis HOM05D001137 ORTHO05D005066 3.3e-21 105.1 66 75.8
Pp3c11_2880 Physcomitrium patens HOM05D001137 ORTHO05D005066 6.2e-20 100.9 75 66.7
BolC2t06908H Brassica oleracea HOM05D000116 ORTHO05D000133 2.0e-18 95.9 75 70.7
arahy.Tifrunner.gnm1.ann1.8I1ERN Arachis hypogaea HOM05D001137 ORTHO05D005066 2.2e-17 92.4 83 61.4
SMO141G0291 Selaginella moellendorffii HOM05D001137 ORTHO05D005066 2.9e-17 92.0 55 80.0
MD13G1171900 Malus domestica HOM05D001137 ORTHO05D005066 3.7e-17 91.7 54 83.3
Pp3c1_4300 Physcomitrium patens HOM05D001137 ORTHO05D005066 1.1e-16 90.1 64 67.2
ClCG00G003670 Citrullus lanatus HOM05D001137 ORTHO05D005066 3.2e-16 88.6 49 89.8
Mapoly0008s0142 Marchantia polymorpha HOM05D001137 ORTHO05D005066 2.1e-15 85.9 65 64.6
Pp3c7_20910 Physcomitrium patens HOM05D001137 ORTHO05D005066 1.0e-14 83.6 73 56.2
Pp3c23_20210 Physcomitrium patens HOM05D001137 ORTHO05D005066 3.0e-14 82.0 71 53.5
Cpa.g.sc1214.1 Carica papaya HOM05D001137 ORTHO05D005066 4.3e-13 78.2 42 92.9
Zm00001eb165710 Zea mays HOM05D001137 ORTHO05D005066 9.5e-13 77.0 54 70.4
BcaC03g13611 Brassica carinata HOM05D001137 ORTHO05D015478 2.8e-12 75.5 84 48.8
Glyma.15G096200 Glycine max HOM05D001137 ORTHO05D005066 3.1e-11 72.0 42 83.3
C02p10070 Brassica napus HOM05D001137 ORTHO05D005066 5.2e-11 71.2 48 77.1
PGSC0003DMG400019543 Solanum tuberosum HOM05D001137 ORTHO05D005066 7.6e-10 67.4 38 81.6
AagrBONN_evm.TU.Sc2ySwM_117.4107 Anthoceros agrestis HOM05D001137 ORTHO05D001967 8.6e-06 53.9 91 35.2


User provided reference genes

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