Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38311 Davidia involucrata HOM05D007775 ORTHO05D009858 4.6e-174 614.4 294 100.0
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 2.3e-104 382.9 290 63.4
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 5.6e-103 378.3 299 64.2
TAR362G1316 Trochodendron aralioides HOM05D007775 ORTHO05D009858 1.2e-97 360.5 280 62.1
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 2.0e-97 359.8 293 61.4
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 4.3e-95 352.1 274 62.0
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 1.2e-92 344.0 302 58.9
Thecc.04G279800 Theobroma cacao HOM05D007775 ORTHO05D009858 1.5e-92 343.6 295 56.9
GSVIVG01017782001 Vitis vinifera HOM05D007775 ORTHO05D009858 2.4e-90 336.3 263 62.4
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 9.2e-90 334.3 294 56.8
Solyc06g054580.4 Solanum lycopersicum HOM05D007775 ORTHO05D009858 1.6e-89 333.6 269 61.3
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 3.5e-89 332.4 297 55.9
Lj6A671T60 Lonicera japonica HOM05D007775 ORTHO05D009858 6.0e-89 331.6 278 60.8
Sopen06g019650 Solanum pennellii HOM05D007775 ORTHO05D009858 1.7e-88 330.1 269 60.6
PGSC0003DMG400030783 Solanum tuberosum HOM05D007775 ORTHO05D009858 2.3e-88 329.7 269 59.5
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 1.1e-87 327.4 295 55.3
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 4.3e-87 325.5 292 55.5
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 3.6e-86 322.4 286 55.9
Potri.008G215200 Populus trichocarpa HOM05D007775 ORTHO05D009858 4.0e-85 318.9 299 56.2
TWI09G0118 Tripterygium wilfordii HOM05D007775 ORTHO05D009858 2.0e-84 316.6 276 58.0
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 1.7e-83 313.5 274 57.3
Cc03_g02150 Coffea canephora HOM05D007775 ORTHO05D009858 3.7e-83 312.4 271 55.0
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 6.4e-83 311.6 274 56.9
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 7.1e-82 308.1 290 54.1
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 9.2e-82 307.8 298 55.4
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.6e-81 307.0 290 54.5
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 1.6e-81 307.0 283 56.2
Atru.chr4.2786 Acer truncatum HOM05D007775 ORTHO05D009858 1.3e-80 303.9 281 53.7
MBI19_g01943_MAGBIO Magnolia biondii HOM05D007775 ORTHO05D009858 3.0e-80 302.8 280 55.7
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 1.1e-79 300.8 274 54.4
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 4.3e-79 298.9 293 51.9
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 4.7e-78 295.4 275 53.1
Gohir.A10G161700 Gossypium hirsutum HOM05D007775 ORTHO05D009858 6.2e-78 295.0 277 54.5
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 1.4e-77 293.9 256 55.1
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 1.8e-77 293.5 293 50.9
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 1.8e-77 293.5 280 51.8
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 6.8e-77 291.6 269 56.9
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 2.0e-76 290.0 279 50.2
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 2.0e-76 290.0 268 52.6
Cpa.g.sc197.12 Carica papaya HOM05D007775 ORTHO05D009858 5.8e-76 288.5 273 54.2
Manes.15G015200 Manihot esculenta HOM05D007775 ORTHO05D009858 5.8e-76 288.5 274 58.4
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 4.1e-74 282.3 296 51.4
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 1.2e-73 280.8 274 52.2
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 1.6e-73 280.4 295 50.2
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 1.6e-73 280.4 285 50.9
Nitab4.5_0002148g0040 Nicotiana tabacum HOM05D007775 ORTHO05D009858 2.1e-73 280.0 250 57.2
Nitab4.5_0001459g0060 Nicotiana tabacum HOM05D007775 ORTHO05D009858 1.1e-71 274.2 247 56.3
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 1.5e-71 273.9 271 52.8
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 4.3e-71 272.3 295 47.5
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 1.2e-70 270.8 299 49.2
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 3.6e-70 269.2 280 48.6
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 8.1e-70 268.1 273 51.3
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 1.8e-69 266.9 282 48.2
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 2.4e-69 266.5 290 48.6
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 2.4e-69 266.5 293 47.4
BraA04t18439Z Brassica rapa HOM05D007775 ORTHO05D009858 6.9e-69 265.0 295 47.8
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 8.9e-69 264.6 276 47.5
Sed0017003 Sechium edule HOM05D007775 ORTHO05D009858 9.9e-68 261.2 268 51.1
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 3.8e-67 259.2 227 54.2
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 4.9e-67 258.8 295 46.1
arahy.Tifrunner.gnm1.ann1.KJPE0P Arachis hypogaea HOM05D007775 ORTHO05D009858 3.9e-64 249.2 322 44.1
arahy.Tifrunner.gnm1.ann1.J8QG6N Arachis hypogaea HOM05D007775 ORTHO05D009858 1.1e-63 247.7 308 46.1
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 7.3e-63 245.0 265 48.3
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 1.9e-58 230.3 288 43.4
ECA240G4119 Erigeron canadensis HOM05D007775 ORTHO05D009858 2.7e-57 226.5 252 47.6
A04p29770 Brassica napus HOM05D007775 ORTHO05D009858 3.3e-55 219.5 245 47.8
Sc06g0007440 Simmondsia chinensis HOM05D007775 ORTHO05D009858 1.4e-53 214.2 271 44.3
AL4G36400 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 2.4e-50 203.4 207 50.2
Aqoxy2G03074 Aquilegia oxysepala HOM05D007775 ORTHO05D009858 5.5e-50 202.2 224 49.1
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 2.5e-42 176.8 215 44.7
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 5.5e-42 175.6 188 49.5
FAN12G2785 Fragaria x ananassa HOM05D007775 ORTHO05D009858 8.7e-40 168.3 198 47.0
ATR0706G202 Amborella trichopoda HOM05D007775 ORTHO05D009858 1.3e-38 164.5 213 43.2
SMO147G0036 Selaginella moellendorffii HOM05D007775 ORTHO05D009858 4.1e-37 159.5 319 32.6
AL92U10060 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 5.9e-36 155.6 180 45.6
Pp3c21_11960 Physcomitrium patens HOM05D007775 ORTHO05D009858 5.9e-36 155.6 304 32.2
vmacro08108 Vaccinium macrocarpon HOM05D007775 ORTHO05D009858 2.7e-33 146.7 91 71.4
CSS0035717 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 1.1e-31 141.4 107 61.7
CSS0050081 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 1.6e-30 137.5 88 70.5
CSS0036115 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 3.7e-30 136.3 107 60.7
QL06p007898 Quercus lobata HOM05D007775 ORTHO05D009858 3.7e-30 136.3 117 57.3
Prupe.8G004900 Prunus persica HOM05D007775 ORTHO05D009858 7.9e-25 118.6 85 64.7
SEGI_15450 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 2.2e-22 110.5 126 42.1
SEGI_08073 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 3.6e-17 93.2 143 36.4
MSTRG.10078 Avicennia marina HOM05D007775 ORTHO05D009858 1.4e-16 91.3 101 45.5
COL.COLO4_10908 Corchorus olitorius HOM05D007775 ORTHO05D009858 1.6e-12 77.8 85 45.9
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 1.4e-08 64.7 273 24.5
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 5.2e-08 62.8 281 21.4
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 6.7e-08 62.4 281 21.4
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.0e-07 60.8 281 21.0
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.6e-07 60.5 288 20.8
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 7.5e-07 58.9 281 21.4
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 7.5e-07 58.9 266 22.2
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 1.7e-06 57.8 267 23.6
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 2.2e-06 57.4 275 22.9
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 2.2e-06 57.4 282 21.6
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 4.8e-06 56.2 270 23.0
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 4.8e-06 56.2 271 21.0
Cc08_g06320 Coffea canephora HOM05D004084 ORTHO05D004662 6.3e-06 55.8 52 42.3
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 8.2e-06 55.5 278 19.4
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 8.2e-06 55.5 105 31.4


User provided reference genes

Program Settings