Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38310 Davidia involucrata HOM05D004591 ORTHO05D005749 4.5e-222 774.2 382 100.0
Hma1.2p1_0698F.1_g205415 Hydrangea macrophylla HOM05D004591 ORTHO05D005749 8.0e-203 710.3 359 96.7
Actinidia01943 Actinidia chinensis HOM05D004591 ORTHO05D005749 2.6e-201 705.3 359 95.8
CSS0009969 Camellia sinensis var. sinensis HOM05D004591 ORTHO05D005749 3.4e-201 704.9 359 95.8
Dinv44407 Davidia involucrata HOM05D004591 ORTHO05D005749 4.4e-201 704.5 359 96.1
Hund20576 Selenicereus undatus HOM05D004591 ORTHO05D005749 4.1e-199 698.0 359 95.3
CSS0050493 Camellia sinensis var. sinensis HOM05D004591 ORTHO05D005749 5.4e-199 697.6 366 94.0
Peaxi162Scf00386g00533 Petunia axillaris HOM05D004591 ORTHO05D005749 5.4e-199 697.6 359 95.3
Thecc.04G279900 Theobroma cacao HOM05D004591 ORTHO05D005749 9.2e-199 696.8 359 95.0
Solyc01g067500.3 Solanum lycopersicum HOM05D004591 ORTHO05D005749 1.2e-198 696.4 359 95.0
Sopen01g029430 Solanum pennellii HOM05D004591 ORTHO05D005749 1.2e-198 696.4 359 95.0
GSVIVG01017781001 Vitis vinifera HOM05D004591 ORTHO05D005749 2.7e-198 695.3 359 95.3
CAN.G580.3 Capsicum annuum HOM05D004591 ORTHO05D005749 7.8e-198 693.7 359 94.4
TAR365G0597 Trochodendron aralioides HOM05D004591 ORTHO05D005749 1.0e-197 693.3 359 94.7
Manes.03G192300 Manihot esculenta HOM05D004591 ORTHO05D005749 1.7e-197 692.6 359 95.3
CiPaw.02G085000 Carya illinoinensis HOM05D004591 ORTHO05D005749 6.6e-197 690.6 359 94.7
Duzib052G0124 Durio zibethinus HOM05D004591 ORTHO05D005749 1.1e-196 689.9 359 94.4
CDE12G0904 Ceratophyllum demersum HOM05D004591 ORTHO05D005749 1.9e-196 689.1 359 93.3
TAR636G0963 Trochodendron aralioides HOM05D004591 ORTHO05D005749 3.3e-196 688.3 359 94.4
PGR004G2200 Punica granatum HOM05D004591 ORTHO05D005749 9.5e-196 686.8 359 94.2
EL10Ac3g06572 Beta vulgaris HOM05D004591 ORTHO05D005749 1.2e-195 686.4 359 93.6
QL06p007990 Quercus lobata HOM05D004591 ORTHO05D005749 1.6e-195 686.0 364 93.7
Gohir.D10G168300 Gossypium hirsutum HOM05D004591 ORTHO05D005749 2.1e-195 685.6 359 93.9
Potri.008G215300 Populus trichocarpa HOM05D004591 ORTHO05D005749 3.6e-195 684.9 359 93.6
Ciclev10005060m.g Citrus clementina HOM05D004591 ORTHO05D005749 4.7e-195 684.5 359 93.0
Nn3g21355 Nelumbo nucifera HOM05D004591 ORTHO05D005749 4.7e-195 684.5 359 93.3
Gohir.A10G161800 Gossypium hirsutum HOM05D004591 ORTHO05D005749 8.0e-195 683.7 359 93.6
Gorai.011G187900 Gossypium raimondii HOM05D004591 ORTHO05D005749 8.0e-195 683.7 359 93.6
Potri.010G022300 Populus trichocarpa HOM05D004591 ORTHO05D005749 8.0e-195 683.7 359 93.6
Sabra08G0155500 Salix brachista HOM05D004591 ORTHO05D005749 1.8e-194 682.6 366 92.6
Phvul.003G102400 Phaseolus vulgaris HOM05D004591 ORTHO05D005749 2.3e-194 682.2 359 93.3
VMungo1215G2997 Vigna mungo HOM05D004591 ORTHO05D005749 2.3e-194 682.2 359 93.3
Eucgr.H03866 Eucalyptus grandis HOM05D004591 ORTHO05D005749 5.2e-194 681.0 359 93.6
MBI18_g01976_MAGBIO Magnolia biondii HOM05D004591 ORTHO05D005749 6.8e-194 680.6 364 92.9
AUR62041198 Chenopodium quinoa HOM05D004591 ORTHO05D005749 8.9e-194 680.2 359 92.5
Cc03_g02140 Coffea canephora HOM05D004591 ORTHO05D005749 8.9e-194 680.2 363 92.3
Atru.chr4.2787 Acer truncatum HOM05D004591 ORTHO05D005749 2.0e-193 679.1 359 93.0
THA.LOC104818847 Tarenaya hassleriana HOM05D004591 ORTHO05D005749 2.0e-193 679.1 359 91.6
Lalb_Chr13g0303761 Lupinus albus HOM05D004591 ORTHO05D005749 2.6e-193 678.7 360 93.1
HanXRQChr03g0080861 Helianthus annuus HOM05D004591 ORTHO05D005749 3.4e-193 678.3 361 93.1
Nn4g25961 Nelumbo nucifera HOM05D004591 ORTHO05D005749 5.8e-193 677.6 361 92.8
SGA_v2.0_scaffold43G16263 Striga asiatica HOM05D004591 ORTHO05D005749 5.8e-193 677.6 359 93.6
Glyma.07G250200 Glycine max HOM05D004591 ORTHO05D005749 7.5e-193 677.2 360 92.2
Glyma.17G024200 Glycine max HOM05D004591 ORTHO05D005749 1.3e-192 676.4 360 91.9
TWI53G0054 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 2.2e-192 675.6 359 91.9
TWI53G1348 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 2.2e-192 675.6 359 91.9
Aqoxy2G03072 Aquilegia oxysepala HOM05D004591 ORTHO05D005749 1.9e-191 672.5 359 91.4
Lj4g0005644 Lotus japonicus HOM05D004591 ORTHO05D005749 1.9e-191 672.5 354 93.5
Oeu062899.1 Olea europaea HOM05D004591 ORTHO05D005749 1.9e-191 672.5 394 85.0
AUR62043784 Chenopodium quinoa HOM05D004591 ORTHO05D005749 4.1e-191 671.4 374 89.0
AL6G29850 Arabidopsis lyrata HOM05D004591 ORTHO05D005749 5.4e-191 671.0 359 91.4
arahy.Tifrunner.gnm1.ann1.7AW5Q0 Arachis hypogaea HOM05D004591 ORTHO05D005749 7.0e-191 670.6 371 90.3
arahy.Tifrunner.gnm1.ann1.Q8N8UE Arachis hypogaea HOM05D004591 ORTHO05D005749 7.0e-191 670.6 371 90.3
Lj4g0023442 Lotus japonicus HOM05D004591 ORTHO05D005749 7.0e-191 670.6 354 93.2
unitig_578.g16759 Utricularia gibba HOM05D004591 ORTHO05D005749 1.2e-190 669.8 359 91.6
Migut.N01937 Erythranthe guttata HOM05D004591 ORTHO05D005749 2.0e-190 669.1 359 92.2
Carub.0006s1686 Capsella rubella HOM05D004591 ORTHO05D005749 3.5e-190 668.3 359 91.4
Ah.13g074560 Amaranthus hybridus HOM05D004591 ORTHO05D005749 7.8e-190 667.2 373 88.7
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 7.8e-190 667.2 355 92.1
HPP92_016927 Vanilla planifolia HOM05D004591 ORTHO05D005749 7.8e-190 667.2 359 90.5
MSTRG.28019 Avicennia marina HOM05D004591 ORTHO05D005749 1.0e-189 666.8 359 92.2
Haze_01244 Corylus avellana HOM05D004591 ORTHO05D005749 1.0e-189 666.8 383 88.3
BcaB05g23341 Brassica carinata HOM05D004591 ORTHO05D005749 3.9e-189 664.8 359 90.5
TWI09G1039 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 5.0e-189 664.5 359 90.8
MD16G1173200 Malus domestica HOM05D004591 ORTHO05D005749 6.6e-189 664.1 359 91.4
BcaC03g13610 Brassica carinata HOM05D004591 ORTHO05D005749 8.6e-189 663.7 361 90.3
C02p10040 Brassica napus HOM05D004591 ORTHO05D005749 1.9e-188 662.5 361 90.0
A02p05010 Brassica napus HOM05D004591 ORTHO05D005749 2.5e-188 662.1 361 90.0
MELO3C006623.2 Cucumis melo HOM05D004591 ORTHO05D005749 3.3e-188 661.8 359 91.1
CsaV3_3G014300 Cucumis sativus L. HOM05D004591 ORTHO05D005749 3.3e-188 661.8 359 91.1
AT5G18580 Arabidopsis thaliana HOM05D004591 ORTHO05D005749 9.5e-188 660.2 359 90.3
BcaB01g05264 Brassica carinata HOM05D004591 ORTHO05D005749 1.6e-187 659.4 359 89.4
PSO210G4745 Papaver somniferum HOM05D004591 ORTHO05D005749 1.6e-187 659.4 359 90.5
RcHm_v2.0_Chr4g0421481 Rosa chinensis HOM05D004591 ORTHO05D005749 1.6e-187 659.4 359 90.3
Lsat_1_v5_gn_5_52860 Lactuca sativa HOM05D004591 ORTHO05D005749 2.1e-187 659.1 361 91.4
Sp6g25750 Schrenkiella parvula HOM05D004591 ORTHO05D005749 2.1e-187 659.1 359 89.7
Sed0000507 Sechium edule HOM05D004591 ORTHO05D005749 4.7e-187 657.9 359 90.8
Psat4g047160 Pisum sativum HOM05D004591 ORTHO05D005749 8.0e-187 657.1 356 91.0
SalBow3G4019 Salvia bowleyana HOM05D004591 ORTHO05D005749 1.1e-186 656.8 374 88.2
BolC2t06906H Brassica oleracea HOM05D004591 ORTHO05D005749 1.4e-186 656.4 369 88.3
CANSAT78G2472 Cannabis sativa HOM05D004591 ORTHO05D005749 1.8e-186 656.0 359 89.4
ClCG05G005920 Citrullus lanatus HOM05D004591 ORTHO05D005749 1.8e-186 656.0 361 90.6
MD13G1171500 Malus domestica HOM05D004591 ORTHO05D005749 2.3e-186 655.6 359 90.8
vmacro08109 Vaccinium macrocarpon HOM05D004591 ORTHO05D005749 4.0e-186 654.8 435 77.7
BraA02t05460Z Brassica rapa HOM05D004591 ORTHO05D005749 5.2e-186 654.4 370 87.8
Oeu044779.2 Olea europaea HOM05D004591 ORTHO05D005749 5.2e-186 654.4 405 81.2
A03p08950 Brassica napus HOM05D004591 ORTHO05D005749 2.0e-185 652.5 369 87.0
ECA240G1474 Erigeron canadensis HOM05D004591 ORTHO05D005749 2.6e-185 652.1 363 90.4
Rhsim04G0218600 Rhododendron simsii HOM05D004591 ORTHO05D005749 3.4e-185 651.7 455 75.2
FvH4_4g17580 Fragaria vesca HOM05D004591 ORTHO05D005749 5.8e-185 651.0 360 88.9
DCAR_002455 Daucus carota HOM05D004591 ORTHO05D005749 2.9e-184 648.7 359 88.0
DCAR_002457 Daucus carota HOM05D004591 ORTHO05D005749 2.9e-184 648.7 359 88.0
TPR.G14635 Trifolium pratense HOM05D004591 ORTHO05D005749 2.9e-184 648.7 355 89.6
BraA03t10221Z Brassica rapa HOM05D004591 ORTHO05D005749 6.4e-184 647.5 382 84.0
Medtr4g119230 Medicago truncatula HOM05D004591 ORTHO05D005749 6.4e-184 647.5 355 89.6
Thhalv10013373m.g Eutrema salsugineum HOM05D004591 ORTHO05D005749 2.4e-183 645.6 354 89.3
CARHR194440 Cardamine hirsuta HOM05D004591 ORTHO05D005749 7.8e-182 640.6 364 87.1
Os05g0149800 Oryza sativa ssp. japonica HOM05D004591 ORTHO05D005749 1.3e-181 639.8 341 91.2
A10p20980 Brassica napus HOM05D004591 ORTHO05D005749 4.3e-180 634.8 359 86.1
BraA10t44163Z Brassica rapa HOM05D004591 ORTHO05D005749 5.6e-180 634.4 359 86.1
C03p10420 Brassica napus HOM05D004591 ORTHO05D005749 9.5e-180 633.6 359 86.9
BolC3t13524H Brassica oleracea HOM05D004591 ORTHO05D005749 3.1e-178 628.6 359 86.4
FAN07G0597 Fragaria x ananassa HOM05D004591 ORTHO05D005749 8.9e-178 627.1 393 80.9
BcaB08g36661 Brassica carinata HOM05D004591 ORTHO05D005749 1.2e-177 626.7 359 86.4
FAN12G0549 Fragaria x ananassa HOM05D004591 ORTHO05D005749 1.2e-177 626.7 360 86.4
FAN12G3150 Fragaria x ananassa HOM05D004591 ORTHO05D005749 1.2e-177 626.7 360 86.4
Aa31LG11G11040 Aethionema arabicum HOM05D004591 ORTHO05D005749 6.4e-176 620.9 371 83.8
FAN17G1172 Fragaria x ananassa HOM05D004591 ORTHO05D005749 1.4e-175 619.8 379 82.8
Duzib151G0997 Durio zibethinus HOM05D004591 ORTHO05D005749 9.2e-175 617.1 359 86.4
Manes.15G015000 Manihot esculenta HOM05D004591 ORTHO05D005749 1.9e-167 592.8 359 84.1
Zm00001eb418170 Zea mays HOM05D004591 ORTHO05D005749 1.3e-163 580.1 354 82.5
HanXRQChr06g0174301 Helianthus annuus HOM05D004591 ORTHO05D005749 6.4e-160 567.8 360 78.3
SMO118G0294 Selaginella moellendorffii HOM05D004591 ORTHO05D005749 8.4e-160 567.4 358 76.8
Lj3A813T31 Lonicera japonica HOM05D004591 ORTHO05D005749 1.9e-159 566.2 359 81.3
Mapoly0035s0147 Marchantia polymorpha HOM05D004591 ORTHO05D005749 4.3e-156 555.1 360 75.3
Sc25g0004740 Simmondsia chinensis HOM05D004591 ORTHO05D005749 3.6e-155 552.0 281 95.4
COL.COLO4_13908 Corchorus olitorius HOM05D004591 ORTHO05D005749 1.1e-154 550.4 281 95.0
Nitab4.5_0000644g0140 Nicotiana tabacum HOM05D004591 ORTHO05D005749 3.2e-151 538.9 297 89.9
AagrBONN_evm.TU.Sc2ySwM_228.5538 Anthoceros agrestis HOM05D004591 ORTHO05D005749 2.3e-149 532.7 382 69.6
PSO832G1860 Papaver somniferum HOM05D004591 ORTHO05D005749 4.3e-148 528.5 285 90.9
Prupe.1G140000 Prunus persica HOM05D004591 ORTHO05D005749 3.7e-147 525.4 281 89.3
BolC9t58658H Brassica oleracea HOM05D004591 ORTHO05D005749 1.3e-139 500.4 324 78.7
HanXRQChr12g0380821 Helianthus annuus HOM05D004591 ORTHO05D005749 1.6e-139 500.0 352 71.3
Pp3c6_6290 Physcomitrium patens HOM05D004591 ORTHO05D005749 1.6e-139 500.0 312 78.2
Actinidia40243 Actinidia chinensis HOM05D004591 ORTHO05D005749 2.6e-137 492.7 359 70.8
Zm00001eb354190 Zea mays HOM05D004591 ORTHO05D005749 3.8e-136 488.8 256 91.4
BcaC04g18665 Brassica carinata HOM05D004591 ORTHO05D005749 2.1e-134 483.0 314 78.3
C09p57910 Brassica napus HOM05D004591 ORTHO05D005749 6.1e-134 481.5 315 77.8
Lsat_1_v5_gn_3_27301 Lactuca sativa HOM05D004591 ORTHO05D005749 7.4e-132 474.6 281 83.6
DCAR_002452 Daucus carota HOM05D004591 ORTHO05D005749 2.1e-126 456.4 359 67.7
ECA246G1561 Erigeron canadensis HOM05D004591 ORTHO05D005749 1.0e-117 427.6 337 65.9
CBR_g7999 Chara braunii HOM05D004591 ORTHO05D005749 6.1e-94 348.6 349 53.3
ATR0706G153 Amborella trichopoda HOM05D004591 ORTHO05D005749 2.1e-86 323.6 188 85.1
Zm00001eb308510 Zea mays HOM05D004591 ORTHO05D005749 8.6e-80 301.6 163 89.6
Cpa.g.sc16.134 Carica papaya HOM05D004591 ORTHO05D005749 3.6e-78 296.2 149 96.6
Lsat_1_v5_gn_2_7960 Lactuca sativa HOM05D004591 ORTHO05D005749 1.1e-66 258.1 193 70.5
Nn1g02295 Nelumbo nucifera HOM05D004591 ORTHO05D005749 4.6e-65 252.7 157 82.2
Manes.07G083301 Manihot esculenta HOM05D004591 ORTHO05D005749 2.8e-62 243.4 154 81.8
Zm00001eb083940 Zea mays HOM05D004591 ORTHO05D005749 2.3e-56 223.8 123 87.8
Nn1g09549 Nelumbo nucifera HOM05D004591 ORTHO05D005749 5.2e-53 212.6 127 85.8
PRCOL_00004048 Prasinoderma coloniale HOM05D004591 ORTHO05D005749 1.8e-45 187.6 358 31.3
Cre01.g047900 Chlamydomonas reinhardtii HOM05D004591 ORTHO05D005749 4.0e-45 186.4 316 34.8
MCO11G522 Micromonas commoda HOM05D004591 ORTHO05D005749 3.3e-39 166.8 301 34.6
Psat4g047200 Pisum sativum HOM05D004591 ORTHO05D005749 1.7e-35 154.5 250 40.4
Cpa.g.sc16.135 Carica papaya HOM05D004591 ORTHO05D005749 2.1e-22 110.9 60 88.3
SEGI_19336 Sequoiadendron giganteum HOM05D004591 ORTHO05D005749 1.4e-21 108.2 58 86.2
Lsat_1_v5_gn_5_3641 Lactuca sativa HOM05D004591 ORTHO05D005749 1.9e-15 87.8 60 76.7
Nn1g02294 Nelumbo nucifera HOM05D004591 ORTHO05D005749 3.3e-15 87.0 83 61.4
DCAR_001163 Daucus carota HOM05D008184 ORTHO05D002997 1.6e-09 68.2 51 64.7
SEGI_41070 Sequoiadendron giganteum HOM05D004591 ORTHO05D005749 7.9e-09 65.9 55 63.6
Lsat_1_v5_gn_1_116641 Lactuca sativa HOM05D004591 ORTHO05D005749 3.9e-08 63.5 131 35.1


User provided reference genes

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