Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 0.0e+00 1803.1 940 100.0
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1312.4 941 73.2
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 0.0e+00 1288.1 883 75.4
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 0.0e+00 1279.2 943 70.0
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1276.5 951 69.4
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 0.0e+00 1270.4 951 69.3
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 0.0e+00 1268.1 946 69.2
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 0.0e+00 1264.2 961 70.0
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 0.0e+00 1233.4 954 67.3
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 0.0e+00 1229.5 942 67.4
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 0.0e+00 1219.9 982 67.3
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1194.1 943 65.9
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 0.0e+00 1175.6 942 64.8
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 0.0e+00 1168.7 951 64.4
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 0.0e+00 1158.7 951 64.0
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 0.0e+00 1147.1 939 62.5
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 0.0e+00 1138.6 904 65.8
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 0.0e+00 1137.1 941 63.1
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 0.0e+00 1136.3 942 63.3
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 0.0e+00 1134.8 949 62.5
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 0.0e+00 1130.9 942 61.7
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 0.0e+00 1126.3 941 62.3
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1110.9 951 60.7
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 0.0e+00 1108.2 945 60.1
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1107.0 951 60.8
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 0.0e+00 1106.7 943 61.5
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 0.0e+00 1102.8 945 60.1
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 0.0e+00 1101.7 990 58.6
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 0.0e+00 1099.0 953 59.7
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 0.0e+00 1097.4 941 60.3
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 0.0e+00 1095.9 951 60.4
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 0.0e+00 1090.9 941 60.3
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 0.0e+00 1090.1 951 61.5
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 0.0e+00 1085.9 942 59.1
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 0.0e+00 1078.5 832 68.1
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 0.0e+00 1077.4 954 59.6
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 5.4e-309 1064.3 946 59.6
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 9.5e-306 1053.5 913 60.0
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.6e-305 1052.7 945 58.8
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 2.3e-304 1048.9 946 58.9
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 1.4e-301 1039.6 957 56.9
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 1.3e-299 1033.1 932 59.0
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 9.5e-298 1026.9 954 59.9
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 1.4e-296 1023.1 941 55.9
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 2.4e-293 1012.3 934 58.9
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 4.1e-293 1011.5 944 55.0
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 4.6e-292 1008.1 944 54.8
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 9.5e-290 1000.3 944 54.0
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 1.1e-288 996.9 892 57.6
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 9.9e-287 990.3 771 66.3
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 2.4e-285 985.7 939 57.5
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 1.6e-284 983.0 882 57.9
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 1.6e-284 983.0 946 53.8
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 1.2e-279 966.8 950 54.0
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 3.4e-279 965.3 907 57.7
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 5.8e-279 964.5 943 53.0
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 2.2e-278 962.6 961 52.4
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 3.2e-277 958.7 948 54.4
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 6.6e-275 951.0 904 54.0
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 5.6e-274 948.0 959 51.4
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 1.6e-273 946.4 944 53.2
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 7.6e-271 937.6 936 54.9
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 9.9e-271 937.2 921 53.9
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 3.8e-270 935.3 924 56.2
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 3.2e-269 932.2 942 53.8
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 1.1e-266 923.7 892 55.3
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 1.3e-265 920.2 962 50.5
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 2.2e-262 909.4 904 53.1
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 2.9e-262 909.1 940 50.7
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 1.4e-261 906.7 915 51.3
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 1.1e-258 897.1 926 51.6
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 1.1e-258 897.1 948 50.5
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 4.6e-252 875.2 942 55.9
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 3.8e-246 855.5 937 50.5
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 1.0e-243 847.4 937 49.0
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 7.4e-242 841.3 950 49.3
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 1.4e-240 837.0 939 48.5
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 3.1e-240 835.9 964 47.9
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 3.4e-239 832.4 944 47.8
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 7.7e-239 831.2 942 47.9
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 2.2e-238 829.7 993 49.7
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 2.2e-238 829.7 994 49.6
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 5.5e-237 825.1 944 47.9
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 2.1e-236 823.2 944 47.7
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 4.6e-236 822.0 944 47.8
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 1.4e-235 820.5 939 47.1
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 1.8e-235 820.1 944 47.7
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 7.4e-234 814.7 658 63.5
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 1.8e-232 810.1 960 47.0
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 5.2e-227 792.0 938 46.4
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 8.5e-222 774.6 949 43.6
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 2.0e-218 763.5 906 46.7
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 4.8e-217 758.8 816 48.7
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 5.7e-210 735.3 825 47.3
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 1.2e-207 727.6 643 58.9
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 3.8e-206 722.6 956 43.8
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 1.7e-193 680.6 616 58.0
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 9.5e-189 664.8 982 42.8
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 5.4e-184 649.0 896 43.6
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 3.5e-159 566.6 915 37.4
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 1.1e-136 491.9 554 47.5
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 2.6e-77 294.7 553 36.7
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 4.9e-68 263.8 948 26.7
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.4e-62 245.7 324 45.1
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 2.2e-60 238.4 259 47.9
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 1.1e-51 209.5 757 26.3
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 6.6e-41 173.7 125 68.8
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 7.6e-37 160.2 449 28.3
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 3.5e-34 151.4 133 63.9
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 3.0e-25 121.7 136 48.5
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 8.7e-25 120.2 415 27.0
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 4.0e-22 111.3 720 22.1
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 5.3e-14 84.3 113 38.9
Nitab4.5_0005468g0040 Nicotiana tabacum HOM05D001280 ORTHO05D008432 2.5e-11 75.5 107 42.1
BcaC07g36900 Brassica carinata HOM05D006492 ORTHO05D008432 3.9e-09 68.2 73 46.6
Gohir.D04G085800 Gossypium hirsutum HOM05D017690 ORTHO05D015145 4.8e-07 61.2 56 58.9
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 1.1e-06 60.1 64 54.7
Cfa022935 Carpinus fangiana HOM05D000902 ORTHO05D018943 4.1e-06 58.2 88 43.2
Gohir.D01G124101 Gossypium hirsutum HOM05D021756 ORTHO05D018943 4.1e-06 58.2 99 38.4


User provided reference genes

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