Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 2.5e-91 339.0 198 100.0
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 3.2e-78 295.4 175 86.9
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 5.4e-78 294.7 179 83.8
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 2.7e-77 292.4 175 87.4
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 7.9e-77 290.8 175 86.3
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 7.9e-77 290.8 173 86.1
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 1.0e-76 290.4 175 85.7
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 1.3e-76 290.0 173 86.1
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.3e-76 290.0 169 89.9
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.7e-76 289.7 176 85.8
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 1.7e-76 289.7 174 86.2
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 2.3e-76 289.3 174 86.2
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 2.3e-76 289.3 174 85.6
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 2.3e-76 289.3 175 86.3
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 3.0e-76 288.9 175 86.3
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 3.9e-76 288.5 175 84.6
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 6.6e-76 287.7 169 88.8
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 6.6e-76 287.7 179 84.4
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 1.1e-75 287.0 173 86.1
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.1e-75 287.0 175 83.4
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 1.1e-75 287.0 175 86.9
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.1e-75 287.0 175 84.0
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 1.5e-75 286.6 175 85.7
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.9e-75 286.2 176 85.2
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 1.9e-75 286.2 183 80.3
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 2.5e-75 285.8 175 82.9
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 2.5e-75 285.8 175 85.7
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 2.5e-75 285.8 173 83.8
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 4.3e-75 285.0 172 87.2
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.3e-75 285.0 175 85.1
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 5.6e-75 284.6 176 84.7
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 9.6e-75 283.9 169 87.6
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 1.6e-74 283.1 176 84.7
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 2.8e-74 282.3 173 85.0
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 8.1e-74 280.8 155 92.3
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.1e-73 280.4 171 83.6
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 1.8e-73 279.6 180 80.6
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 3.1e-73 278.9 174 83.9
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 5.3e-73 278.1 158 88.0
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.3e-73 278.1 174 82.2
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 6.9e-73 277.7 170 83.5
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 9.0e-73 277.3 171 81.9
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 1.2e-72 276.9 175 81.1
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 2.0e-72 276.2 167 86.8
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 4.5e-72 275.0 163 85.3
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.6e-72 274.2 186 76.3
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 1.3e-71 273.5 171 84.2
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 2.2e-71 272.7 167 85.6
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 2.2e-71 272.7 171 80.7
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 3.8e-71 271.9 161 87.0
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 3.8e-71 271.9 170 82.9
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.4e-71 271.2 186 75.8
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 8.4e-71 270.8 174 81.0
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 8.4e-71 270.8 187 75.4
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 8.4e-71 270.8 187 75.4
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 8.4e-71 270.8 187 75.4
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 8.4e-71 270.8 176 80.7
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 2.4e-70 269.2 156 87.8
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 5.5e-70 268.1 176 79.5
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 5.5e-70 268.1 159 83.0
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 5.5e-70 268.1 159 83.6
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 5.5e-70 268.1 159 83.6
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.6e-69 266.5 159 83.6
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 1.6e-69 266.5 178 78.1
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 2.1e-69 266.2 161 82.6
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 2.1e-69 266.2 171 80.1
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 2.7e-69 265.8 178 79.8
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 4.6e-69 265.0 173 77.5
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 4.6e-69 265.0 171 81.3
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 6.0e-69 264.6 167 82.6
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 6.0e-69 264.6 167 82.6
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 1.3e-68 263.5 161 83.9
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 1.3e-68 263.5 168 81.5
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 1.3e-68 263.5 161 82.0
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 3.0e-68 262.3 168 81.5
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 3.0e-68 262.3 174 77.6
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 3.9e-68 261.9 161 80.1
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 8.7e-68 260.8 168 81.0
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 8.7e-68 260.8 174 77.0
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.1e-67 260.4 166 79.5
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 1.5e-67 260.0 183 73.2
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 1.5e-67 260.0 170 80.0
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 1.5e-67 260.0 181 72.9
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 3.3e-67 258.8 169 77.5
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 5.6e-67 258.1 180 73.9
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 9.6e-67 257.3 168 80.4
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 9.6e-67 257.3 156 85.9
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 2.1e-66 256.1 161 80.7
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 2.8e-66 255.8 160 80.6
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 6.2e-66 254.6 153 86.3
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 4.0e-65 251.9 174 72.4
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.0e-65 251.9 171 77.8
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 9.0e-65 250.8 174 75.3
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 9.0e-65 250.8 175 75.4
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 1.2e-64 250.4 174 74.7
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.2e-64 250.4 174 73.6
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 4.5e-64 248.4 164 78.7
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 5.8e-64 248.1 158 79.7
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.7e-63 246.5 160 80.6
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.7e-63 246.5 158 81.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.2e-63 246.1 161 78.3
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.2e-63 246.1 174 74.7
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 2.9e-63 245.7 156 79.5
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 4.9e-63 245.0 159 77.4
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 4.9e-63 245.0 184 70.7
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 6.5e-63 244.6 160 80.6
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.4e-62 243.4 174 74.7
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.9e-62 243.0 194 68.6
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 1.9e-62 243.0 160 78.8
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 4.2e-62 241.9 174 72.4
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 4.2e-62 241.9 174 73.0
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 7.1e-62 241.1 176 71.6
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.2e-61 240.4 174 71.3
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 5.1e-60 235.0 177 72.3
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 1.9e-59 233.0 182 67.6
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 2.5e-59 232.6 151 80.1
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 4.8e-58 228.4 146 82.2
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 1.1e-57 227.3 242 55.8
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 2.4e-57 226.1 174 69.5
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 3.1e-57 225.7 152 74.3
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 6.9e-57 224.6 156 73.1
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 9.0e-57 224.2 179 68.2
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 1.2e-56 223.8 168 70.8
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 2.0e-56 223.0 152 75.0
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 4.2e-54 215.3 144 75.0
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 3.9e-52 208.8 151 72.2
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 4.1e-49 198.7 150 72.0
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 2.0e-48 196.4 152 69.1
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 8.5e-47 191.0 174 61.5
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 8.5e-47 191.0 215 54.9
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 1.1e-46 190.7 147 66.7
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 1.9e-46 189.9 174 60.9
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 4.2e-46 188.7 173 61.8
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.6e-45 186.8 119 82.4
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 1.5e-43 180.3 132 69.7
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.0e-43 179.9 111 78.4
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 2.5e-43 179.5 145 66.9
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 5.7e-43 178.3 154 63.6
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 9.7e-43 177.6 104 83.7
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-39 167.5 130 67.7
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 5.0e-39 165.2 156 52.6
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.5e-38 162.9 131 67.9
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 3.2e-38 162.5 131 67.9
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 5.5e-38 161.8 131 67.9
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 2.7e-37 159.5 144 53.5
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-36 157.1 131 67.9
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 1.3e-34 150.6 155 52.9
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 6.3e-34 148.3 153 53.6
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 1.4e-33 147.1 82 85.4
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.8e-33 146.7 120 65.8
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 1.6e-32 143.7 144 50.0
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.5e-32 142.5 140 50.0
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 7.7e-32 141.4 103 65.0
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 8.8e-28 127.9 177 48.0
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 1.6e-24 117.1 84 73.8
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 8.0e-21 104.8 87 69.0
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 6.5e-15 85.1 58 69.0
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 1.2e-11 74.3 137 43.1
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 2.0e-11 73.6 53 79.2
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.4e-11 72.8 104 49.0
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 3.3e-06 56.2 43 60.5


User provided reference genes

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