Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38092 Davidia involucrata HOM05D001686 ORTHO05D001645 7.5e-166 587.0 280 100.0
TAR383G0741 Trochodendron aralioides HOM05D001686 ORTHO05D001645 3.4e-17 93.2 129 41.9
Dinv11616 Davidia involucrata HOM05D001686 ORTHO05D001645 2.4e-15 87.0 191 32.5
Manes.11G051335 Manihot esculenta HOM05D001686 ORTHO05D001645 3.2e-15 86.7 115 45.2
TAR625G0862 Trochodendron aralioides HOM05D001686 ORTHO05D001645 4.2e-15 86.3 129 41.1
CSS0038409 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 5.4e-15 85.9 149 36.2
Dinv30178 Davidia involucrata HOM05D001686 ORTHO05D001645 7.1e-15 85.5 128 38.3
CSS0033015 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 3.5e-14 83.2 242 28.9
Rhsim02G0194400 Rhododendron simsii HOM05D001686 ORTHO05D001645 6.0e-14 82.4 235 29.4
Gohir.A10G076900 Gossypium hirsutum HOM05D001686 ORTHO05D001645 1.7e-13 80.9 190 32.6
TAR636G2494 Trochodendron aralioides HOM05D001686 ORTHO05D001645 2.3e-13 80.5 135 40.0
Nn2g11935 Nelumbo nucifera HOM05D001686 ORTHO05D001645 3.9e-13 79.7 124 41.1
Actinidia15688 Actinidia chinensis HOM05D001686 ORTHO05D001645 6.6e-13 79.0 129 36.4
GSVIVG01015486001 Vitis vinifera HOM05D001686 ORTHO05D001645 6.6e-13 79.0 135 36.3
Gohir.D10G074500 Gossypium hirsutum HOM05D001686 ORTHO05D001645 1.5e-12 77.8 172 30.8
Gorai.011G080400 Gossypium raimondii HOM05D001686 ORTHO05D001645 1.5e-12 77.8 172 30.8
CSS0047192 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 3.3e-12 76.6 134 35.1
CSS0015643 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 4.3e-12 76.3 134 36.6
CSS0028350 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 4.3e-12 76.3 134 36.6
CSS0011180 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 5.6e-12 75.9 134 36.6
Ciclev10010442m.g Citrus clementina HOM05D001686 ORTHO05D001645 5.6e-12 75.9 187 28.3
Hma1.2p1_0665F.1_g199280 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 7.3e-12 75.5 301 25.6
Actinidia26411 Actinidia chinensis HOM05D001686 ORTHO05D001645 9.6e-12 75.1 117 35.9
Gohir.A06G117000 Gossypium hirsutum HOM05D001686 ORTHO05D001645 9.6e-12 75.1 167 32.3
Gohir.A10G076800 Gossypium hirsutum HOM05D001686 ORTHO05D001645 9.6e-12 75.1 172 30.8
Nn8g39366 Nelumbo nucifera HOM05D001686 ORTHO05D001645 1.3e-11 74.7 116 40.5
BcaC09g52034 Brassica carinata HOM05D001686 ORTHO05D001645 1.6e-11 74.3 190 30.5
Dinv41543 Davidia involucrata HOM05D001686 ORTHO05D001645 2.1e-11 73.9 135 34.8
Sp7g30230 Schrenkiella parvula HOM05D001686 ORTHO05D001645 2.1e-11 73.9 201 30.3
CiPaw.07G220800 Carya illinoinensis HOM05D001686 ORTHO05D001645 4.8e-11 72.8 200 30.0
Potri.001G173900 Populus trichocarpa HOM05D001686 ORTHO05D001645 4.8e-11 72.8 116 39.7
Atru.chr7.2373 Acer truncatum HOM05D001686 ORTHO05D001645 6.2e-11 72.4 203 27.1
QL02p022791 Quercus lobata HOM05D001686 ORTHO05D001645 6.2e-11 72.4 125 40.0
vmacro05195 Vaccinium macrocarpon HOM05D001686 ORTHO05D001645 6.2e-11 72.4 114 39.5
CSS0029915 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 8.1e-11 72.0 136 34.6
COL.COLO4_12880 Corchorus olitorius HOM05D001686 ORTHO05D001645 8.1e-11 72.0 162 30.2
Gorai.010G137600 Gossypium raimondii HOM05D001686 ORTHO05D001645 8.1e-11 72.0 163 30.7
Atru.chr7.2253 Acer truncatum HOM05D001686 ORTHO05D001645 1.1e-10 71.6 203 27.1
Gohir.D06G119700 Gossypium hirsutum HOM05D001686 ORTHO05D001645 1.1e-10 71.6 163 31.3
Sabra01G0137900 Salix brachista HOM05D001686 ORTHO05D001645 1.1e-10 71.6 240 27.9
TAR626G1154 Trochodendron aralioides HOM05D001686 ORTHO05D001645 1.1e-10 71.6 120 35.8
QL02p022757 Quercus lobata HOM05D001686 ORTHO05D001645 1.4e-10 71.2 108 40.7
BraA01t00559Z Brassica rapa HOM05D001686 ORTHO05D001645 1.8e-10 70.9 202 31.7
CSS0037107 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 1.8e-10 70.9 135 34.1
CSS0041540 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 1.8e-10 70.9 135 34.1
QL02p022765 Quercus lobata HOM05D001686 ORTHO05D001645 1.8e-10 70.9 124 35.5
Thecc.06G074600 Theobroma cacao HOM05D001686 ORTHO05D001645 1.8e-10 70.9 164 29.9
GSVIVG01035806001 Vitis vinifera HOM05D001686 ORTHO05D001645 1.8e-10 70.9 170 30.0
CSS0030484 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 2.4e-10 70.5 125 35.2
QL02p087418 Quercus lobata HOM05D001686 ORTHO05D001645 3.1e-10 70.1 135 31.9
A01p05920 Brassica napus HOM05D001686 ORTHO05D001645 4.0e-10 69.7 202 30.7
Psat4g040760 Pisum sativum HOM05D001686 ORTHO05D001645 4.0e-10 69.7 175 30.9
Potri.006G250600 Populus trichocarpa HOM05D001686 ORTHO05D001645 4.0e-10 69.7 130 33.8
Carub.0007s0813 Capsella rubella HOM05D001686 ORTHO05D001645 5.3e-10 69.3 192 30.2
Glyma.17G118000 Glycine max HOM05D001686 ORTHO05D001645 5.3e-10 69.3 109 37.6
Hma1.2p1_0007F.1_g005120 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 5.3e-10 69.3 180 30.0
Manes.14G129100 Manihot esculenta HOM05D001686 ORTHO05D001645 5.3e-10 69.3 187 32.1
Actinidia07439 Actinidia chinensis HOM05D001686 ORTHO05D001645 6.9e-10 68.9 117 35.0
CSS0031518 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 6.9e-10 68.9 125 36.0
Haze_21572 Corylus avellana HOM05D001686 ORTHO05D001645 1.2e-09 68.2 117 34.2
Sabra18G0032100 Salix brachista HOM05D001686 ORTHO05D001645 1.2e-09 68.2 126 34.1
AL7G19400 Arabidopsis lyrata HOM05D001686 ORTHO05D001645 1.5e-09 67.8 318 23.9
C01p06540 Brassica napus HOM05D001686 ORTHO05D001645 1.5e-09 67.8 202 29.7
Dinv36568 Davidia involucrata HOM05D001686 ORTHO05D001645 1.5e-09 67.8 59 50.8
Phvul.003G161300 Phaseolus vulgaris HOM05D001686 ORTHO05D001645 1.5e-09 67.8 107 35.5
VMungo1215G2594 Vigna mungo HOM05D001686 ORTHO05D001645 1.5e-09 67.8 107 36.4
Aqoxy7G02048 Aquilegia oxysepala HOM05D001686 ORTHO05D001645 2.0e-09 67.4 112 38.4
Thhalv10025566m.g Eutrema salsugineum HOM05D001686 ORTHO05D001645 2.6e-09 67.0 264 25.8
Manes.08G088200 Manihot esculenta HOM05D001686 ORTHO05D001645 2.6e-09 67.0 187 31.6
CSS0050208 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 3.4e-09 66.6 142 32.4
Carub.0006s1840 Capsella rubella HOM05D001686 ORTHO05D001645 5.8e-09 65.9 210 27.1
A08p18180 Brassica napus HOM05D001686 ORTHO05D001645 7.6e-09 65.5 215 28.8
BraA08t33771Z Brassica rapa HOM05D001686 ORTHO05D001645 7.6e-09 65.5 215 28.8
Potri.018G030500 Populus trichocarpa HOM05D001686 ORTHO05D001645 7.6e-09 65.5 135 31.1
BcaC01g01022 Brassica carinata HOM05D001686 ORTHO05D001645 9.9e-09 65.1 220 28.2
Lj7A718T64 Lonicera japonica HOM05D001686 ORTHO05D001645 1.3e-08 64.7 185 28.1
Prupe.1G473100 Prunus persica HOM05D001686 ORTHO05D001645 1.3e-08 64.7 99 38.4
Cc06_g08940 Coffea canephora HOM05D001686 ORTHO05D001645 1.7e-08 64.3 109 35.8
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 2.2e-08 63.9 114 29.8
BcaB03g12746 Brassica carinata HOM05D001686 ORTHO05D001645 2.9e-08 63.5 222 27.5
Ciclev10008447m.g Citrus clementina HOM05D001686 ORTHO05D001645 2.9e-08 63.5 131 32.8
COL.COLO4_12876 Corchorus olitorius HOM05D002659 ORTHO05D002940 2.9e-08 63.5 47 55.3
Cfa013182 Carpinus fangiana HOM05D001686 ORTHO05D001645 3.8e-08 63.2 118 34.7
Duzib235G0808 Durio zibethinus HOM05D001686 ORTHO05D001645 4.9e-08 62.8 60 46.7
Lalb_Chr13g0302061 Lupinus albus HOM05D001686 ORTHO05D001645 4.9e-08 62.8 119 32.8
BolC3t21034H Brassica oleracea HOM05D001686 ORTHO05D001645 6.4e-08 62.4 218 28.0
Cfa003338 Carpinus fangiana HOM05D001686 ORTHO05D001645 6.4e-08 62.4 130 30.8
Haze_25620 Corylus avellana HOM05D001686 ORTHO05D001645 8.4e-08 62.0 193 26.4
RcHm_v2.0_Chr7g0226201 Rosa chinensis HOM05D001686 ORTHO05D001645 8.4e-08 62.0 101 38.6
C03p87340 Brassica napus HOM05D001686 ORTHO05D001645 1.1e-07 61.6 215 27.9
TPR.G10689 Trifolium pratense HOM05D001686 ORTHO05D001645 1.1e-07 61.6 107 34.6
BolC1t00649H Brassica oleracea HOM05D001686 ORTHO05D001645 1.4e-07 61.2 97 37.1
CiPaw.08G013400 Carya illinoinensis HOM05D001686 ORTHO05D001645 1.4e-07 61.2 122 31.1
Glyma.05G010000 Glycine max HOM05D001686 ORTHO05D001645 1.4e-07 61.2 109 34.9
Lj4g0025282 Lotus japonicus HOM05D001686 ORTHO05D001645 1.4e-07 61.2 101 33.7
MBI01_g24083_MAGBIO Magnolia biondii HOM05D001686 ORTHO05D001645 1.4e-07 61.2 117 34.2
Medtr4g113670 Medicago truncatula HOM05D001686 ORTHO05D001645 1.4e-07 61.2 107 36.4
PGR142G2856 Punica granatum HOM05D001686 ORTHO05D001645 1.9e-07 60.8 248 25.8
Gohir.D06G056100 Gossypium hirsutum HOM05D001686 ORTHO05D001645 2.4e-07 60.5 135 30.4
Gorai.010G065700 Gossypium raimondii HOM05D001686 ORTHO05D001645 2.4e-07 60.5 135 30.4
BcaB06g28075 Brassica carinata HOM05D001686 ORTHO05D001645 3.2e-07 60.1 239 25.9
Gohir.A06G057800 Gossypium hirsutum HOM05D001686 ORTHO05D001645 3.2e-07 60.1 135 30.4
Lalb_Chr07g0178741 Lupinus albus HOM05D001686 ORTHO05D001645 3.2e-07 60.1 119 33.6
AT4G32440 Arabidopsis thaliana HOM05D001686 ORTHO05D001645 4.2e-07 59.7 221 27.1
CiPaw.03G240100 Carya illinoinensis HOM05D001686 ORTHO05D001645 4.2e-07 59.7 118 31.4
CiPaw.04G169400 Carya illinoinensis HOM05D001686 ORTHO05D001645 4.2e-07 59.7 119 34.5
Lj8C620G6 Lonicera japonica HOM05D001686 ORTHO05D001645 5.4e-07 59.3 97 39.2
Actinidia04628 Actinidia chinensis HOM05D001686 ORTHO05D001645 7.1e-07 58.9 87 36.8
AT5G20030 Arabidopsis thaliana HOM05D001686 ORTHO05D001645 7.1e-07 58.9 126 31.0
arahy.Tifrunner.gnm1.ann1.0DBH4W Arachis hypogaea HOM05D001686 ORTHO05D001645 7.1e-07 58.9 119 31.9
CARHR240360 Cardamine hirsuta HOM05D001686 ORTHO05D001645 7.1e-07 58.9 276 24.3
Manes.06G052800 Manihot esculenta HOM05D001686 ORTHO05D001645 7.1e-07 58.9 124 26.6
Os02g0204500 Oryza sativa ssp. japonica HOM05D001686 ORTHO05D001645 7.1e-07 58.9 117 30.8
PGSC0003DMG400019480 Solanum tuberosum HOM05D001686 ORTHO05D001645 7.1e-07 58.9 74 41.9
MD08G1144800 Malus domestica HOM05D001686 ORTHO05D001645 1.2e-06 58.2 99 34.3
Sopen11g003230 Solanum pennellii HOM05D001686 ORTHO05D001645 1.2e-06 58.2 73 42.5
Solyc11g007340.2 Solanum lycopersicum HOM05D001686 ORTHO05D001645 1.6e-06 57.8 73 41.1
Aa31sc1489G10 Aethionema arabicum HOM05D001686 ORTHO05D001645 2.1e-06 57.4 99 35.4
BcaC03g13726 Brassica carinata HOM05D001686 ORTHO05D001645 2.1e-06 57.4 139 26.6
BNapus_Darmor_BZH_scaffold_38p01870 Brassica napus HOM05D001686 ORTHO05D001645 2.1e-06 57.4 139 28.8
BolC2t07003H Brassica oleracea HOM05D001686 ORTHO05D001645 2.1e-06 57.4 139 26.6
Cpa.g.sc427.1 Carica papaya HOM05D001686 ORTHO05D001645 2.1e-06 57.4 111 33.3
Hma1.2p1_0018F.1_g012790 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 2.1e-06 57.4 127 30.7
arahy.Tifrunner.gnm1.ann1.Q9NLBV Arachis hypogaea HOM05D001686 ORTHO05D001645 2.7e-06 57.0 119 31.9
Glyma.04G068800 Glycine max HOM05D001686 ORTHO05D001645 2.7e-06 57.0 104 33.7
RcHm_v2.0_Chr2g0089371 Rosa chinensis HOM05D001686 ORTHO05D001645 2.7e-06 57.0 119 30.3
FAN26G0998 Fragaria x ananassa HOM05D001686 ORTHO05D001645 3.5e-06 56.6 57 43.9
Peaxi162Scf00244g01122 Petunia axillaris HOM05D001686 ORTHO05D001645 3.5e-06 56.6 184 25.0
Prupe.7G238100 Prunus persica HOM05D001686 ORTHO05D001645 3.5e-06 56.6 103 34.0
FAN28G0829 Fragaria x ananassa HOM05D001686 ORTHO05D001645 4.6e-06 56.2 57 43.9
AL4G17050 Arabidopsis lyrata HOM05D001686 ORTHO05D001645 6.0e-06 55.8 169 27.8
Cpa.g.sc75.67 Carica papaya HOM05D001686 ORTHO05D001645 6.0e-06 55.8 90 32.2
Eucgr.C04172 Eucalyptus grandis HOM05D001686 ORTHO05D001645 6.0e-06 55.8 190 25.8
Glyma.06G070400 Glycine max HOM05D001686 ORTHO05D001645 6.0e-06 55.8 115 31.3
Oeu020097.1 Olea europaea HOM05D001686 ORTHO05D001645 6.0e-06 55.8 137 35.8
Atru.chr7.1235 Acer truncatum HOM05D001686 ORTHO05D001645 7.9e-06 55.5 135 29.6
BolC3t13607H Brassica oleracea HOM05D001686 ORTHO05D001645 7.9e-06 55.5 116 31.9
Hma1.2p1_0000F.1_g000790 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 7.9e-06 55.5 79 34.2


User provided reference genes

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