Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 0.0e+00 1220.3 680 100.0
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 2.4e-250 869.0 745 70.5
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 4.2e-178 629.0 856 47.0
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.8e-171 605.9 841 47.2
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 3.3e-167 592.8 900 43.7
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 4.1e-157 559.3 770 49.6
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.2e-156 557.8 735 52.9
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.1e-151 541.2 765 47.6
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.7e-150 536.2 758 48.5
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.7e-150 536.2 758 48.5
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.4e-141 507.7 698 51.9
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 5.9e-140 502.3 598 56.5
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.0e-136 491.5 803 45.6
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 1.5e-135 487.6 761 43.6
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 3.2e-130 469.9 648 48.3
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 8.0e-129 465.3 920 37.5
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 1.7e-126 457.6 762 41.3
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.8e-125 454.1 728 41.5
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 5.4e-125 452.6 725 41.2
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 4.0e-120 436.4 758 41.4
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 8.9e-120 435.3 780 40.0
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 1.5e-119 434.5 864 37.3
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 9.8e-119 431.8 758 40.9
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 1.2e-116 424.9 851 40.7
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 4.5e-116 422.9 463 53.3
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 7.3e-114 415.6 758 39.7
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.2e-113 414.8 751 40.1
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 2.8e-113 413.7 759 39.1
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 2.9e-110 403.7 765 39.5
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 6.4e-110 402.5 798 37.1
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 2.5e-106 390.6 699 39.8
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 6.2e-105 386.0 791 37.5
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 5.4e-101 372.9 718 39.6
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 1.2e-100 371.7 805 37.4
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 3.5e-100 370.2 755 36.2
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 6.0e-100 369.4 715 39.0
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 7.8e-100 369.0 766 36.3
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.0e-99 368.6 712 39.3
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 5.6e-98 362.8 762 36.1
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 3.6e-97 360.1 756 35.7
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 3.1e-96 357.1 757 37.6
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 3.1e-96 357.1 780 35.6
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 2.6e-95 354.0 751 37.9
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 4.4e-95 353.2 751 37.3
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 4.4e-95 353.2 760 36.6
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.4e-93 348.2 730 36.0
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 5.1e-91 339.7 690 38.4
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 3.3e-90 337.0 692 36.8
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 7.3e-90 335.9 758 34.4
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.8e-89 334.0 792 34.6
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 1.1e-88 332.0 758 36.4
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.5e-87 328.2 793 34.0
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 3.4e-87 327.0 752 35.0
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 5.8e-87 326.2 610 38.0
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 2.2e-86 324.3 735 36.2
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 3.5e-84 317.0 734 34.7
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.9e-82 311.2 804 33.3
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 5.6e-82 309.7 376 50.5
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 1.2e-81 308.5 738 36.2
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.6e-81 308.1 684 36.5
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 3.6e-81 307.0 765 33.3
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 6.2e-81 306.2 841 31.9
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 5.3e-80 303.1 805 32.4
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 1.2e-79 302.0 733 33.2
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 2.0e-79 301.2 754 34.4
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 1.7e-78 298.1 731 33.0
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 1.7e-78 298.1 847 31.3
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 4.6e-76 290.0 725 34.2
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.0e-75 288.9 795 32.6
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 8.7e-75 285.8 784 32.7
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 3.6e-73 280.4 781 32.3
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.8e-72 278.1 761 34.0
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 7.6e-71 272.7 762 32.3
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.3e-70 271.9 811 32.4
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.9e-70 270.8 746 34.9
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.8e-70 270.4 772 33.4
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.1e-69 268.9 746 34.5
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 1.4e-69 268.5 702 37.6
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.2e-68 265.4 465 41.3
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 4.6e-68 263.5 652 36.0
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.1e-66 258.8 734 33.2
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.5e-66 257.7 432 40.5
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 2.8e-65 254.2 848 30.0
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 8.1e-65 252.7 923 34.3
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.1e-64 252.3 934 29.0
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 4.0e-64 250.4 664 37.3
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 3.4e-63 247.3 801 32.0
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 2.2e-62 244.6 752 31.8
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 2.5e-61 241.1 745 33.7
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 3.2e-61 240.7 664 37.2
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.5e-61 240.0 736 32.5
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 1.2e-60 238.8 669 31.1
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 3.0e-59 234.2 322 48.1
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 3.9e-59 233.8 930 32.2
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 1.9e-58 231.5 732 31.4
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 2.5e-58 231.1 756 30.7
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 4.8e-57 226.9 941 27.3
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 8.2e-57 226.1 677 33.8
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 8.2e-57 226.1 960 27.4
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.8e-56 224.9 766 29.6
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.0e-54 219.2 613 34.1
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 1.7e-54 218.4 410 37.3
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 1.4e-53 215.3 766 29.2
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 3.2e-53 214.2 728 28.8
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 7.1e-53 213.0 608 32.2
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 2.1e-52 211.5 738 29.9
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 2.3e-51 208.0 746 28.2
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 3.3e-50 204.1 735 28.6
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 4.3e-50 203.8 590 31.9
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 1.6e-49 201.8 739 28.3
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 1.4e-48 198.7 744 27.8
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 1.8e-48 198.4 801 28.2
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 1.7e-46 191.8 749 27.8
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 1.1e-45 189.1 771 27.0
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 2.3e-43 181.4 769 28.2
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 3.9e-43 180.6 652 28.2
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 8.8e-43 179.5 764 28.9
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 1.5e-42 178.7 487 33.5
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.2e-39 169.1 775 27.4
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 7.7e-39 166.4 734 27.0
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 2.7e-36 157.9 479 33.6
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.8e-35 155.2 144 58.3
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 3.9e-35 154.1 445 29.9
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 9.1e-32 142.9 596 28.4
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.3e-30 139.0 340 32.9
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.6e-28 132.1 110 62.7
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 7.4e-26 123.2 154 48.7
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 2.2e-22 111.7 196 38.8
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 5.5e-21 107.1 769 23.0
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.6e-20 105.5 104 58.7
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 2.1e-20 105.1 798 24.4
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 8.0e-20 103.2 145 46.2
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 4.0e-19 100.9 102 50.0
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.5e-18 99.0 108 51.9
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.8e-16 92.0 175 37.1
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 2.4e-16 91.7 669 24.2
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 1.6e-15 89.0 114 47.4
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 2.7e-15 88.2 102 49.0
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 2.7e-15 88.2 680 24.0
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 4.5e-15 87.4 188 35.1
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 4.5e-15 87.4 106 44.3
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 1.3e-14 85.9 83 47.0
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 1.4e-11 75.9 48 64.6
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 4.4e-10 70.9 160 31.9
Cpa.g.sc10.163 Carica papaya HOM05D004831 ORTHO05D003975 5.4e-08 63.9 52 53.8
Rhsim08G0120100 Rhododendron simsii HOM05D000004 ORTHO05D000002 1.2e-07 62.8 83 49.4
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 1.0e-06 59.7 71 43.7
TAR636G0481 Trochodendron aralioides HOM05D004831 ORTHO05D003975 8.6e-06 56.6 57 52.6


User provided reference genes

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