Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 5.4e-174 615.1 588 100.0
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 2.8e-77 293.9 335 52.2
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.6e-67 260.8 333 48.0
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 1.4e-65 255.0 334 48.2
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.7e-64 250.8 333 47.1
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 3.5e-64 250.4 335 48.1
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 2.5e-62 244.2 335 46.6
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.3e-62 243.8 333 46.8
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 4.3e-62 243.4 331 47.1
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 9.5e-62 242.3 335 48.4
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 8.1e-61 239.2 335 48.7
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 6.8e-60 236.1 276 56.2
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 5.8e-59 233.0 335 45.4
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 1.7e-58 231.5 559 48.5
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 7.8e-56 222.6 328 44.5
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 1.3e-55 221.9 306 44.8
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 2.3e-55 221.1 335 44.8
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 1.2e-53 215.3 306 46.4
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 3.7e-50 203.8 335 45.4
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 3.7e-50 203.8 296 44.3
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.1e-49 202.2 334 39.5
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 4.1e-49 200.3 295 45.8
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 9.2e-49 199.1 330 41.2
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 9.2e-49 199.1 335 42.1
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 3.5e-48 197.2 330 37.6
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 5.1e-47 193.4 296 42.2
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 6.6e-47 193.0 335 41.5
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.5e-46 191.8 335 40.0
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.9e-46 191.4 276 52.9
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 9.6e-46 189.1 334 40.1
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 9.6e-46 189.1 335 39.7
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 1.2e-45 188.7 335 38.5
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 3.6e-45 187.2 279 42.3
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 6.2e-45 186.4 335 37.6
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 5.2e-44 183.3 277 44.0
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 1.5e-43 181.8 335 38.8
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 1.5e-43 181.8 296 40.9
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 5.8e-43 179.9 335 38.2
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 1.3e-42 178.7 279 42.3
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.7e-42 178.3 327 36.7
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 2.2e-42 177.9 334 38.9
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 1.1e-41 175.6 283 41.0
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 2.4e-41 174.5 335 35.5
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 3.2e-41 174.1 273 43.2
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 2.7e-40 171.0 334 37.4
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 6.0e-40 169.9 335 34.0
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 5.1e-39 166.8 280 41.4
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 5.6e-38 163.3 332 39.8
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 1.6e-37 161.8 293 39.9
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.6e-37 161.8 283 39.6
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 2.1e-37 161.4 289 39.4
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 4.8e-37 160.2 335 36.4
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 8.1e-37 159.5 335 35.8
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 1.8e-36 158.3 272 40.4
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 6.9e-36 156.4 335 36.7
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 9.0e-36 156.0 272 38.2
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 1.2e-35 155.6 335 34.9
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 3.4e-35 154.1 335 36.1
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.4e-35 153.7 335 33.7
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 1.3e-34 152.1 334 38.3
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 2.9e-34 151.0 283 36.0
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 6.4e-34 149.8 124 65.3
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 2.4e-33 147.9 269 38.3
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 4.2e-33 147.1 305 35.1
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 5.4e-33 146.7 273 35.5
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 7.9e-32 142.9 550 39.6
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.0e-31 142.5 332 34.0
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.7e-31 141.7 271 35.8
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 1.7e-31 141.7 330 36.1
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.3e-31 141.4 115 70.4
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 4.8e-29 133.7 330 31.8
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 4.8e-29 133.7 332 33.7
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 4.8e-29 133.7 302 34.4
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 8.1e-29 132.9 314 34.1
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 8.1e-29 132.9 330 31.8
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 5.3e-28 130.2 332 32.2
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 5.3e-28 130.2 239 34.7
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 9.0e-28 129.4 226 35.8
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 5.8e-27 126.7 259 40.2
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 5.8e-27 126.7 295 35.3
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 2.2e-26 124.8 334 31.1
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.4e-25 122.1 275 32.0
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.4e-25 122.1 275 32.0
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.4e-25 122.1 275 32.0
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 1.4e-25 122.1 335 34.0
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.4e-25 122.1 282 35.5
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 2.4e-25 121.3 275 32.7
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.4e-25 121.3 332 28.3
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 4.2e-25 120.6 335 36.1
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.5e-25 120.2 335 36.1
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 9.3e-25 119.4 260 34.2
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 1.2e-24 119.0 276 34.8
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.1e-24 118.2 125 57.6
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 3.5e-24 117.5 275 31.3
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 8.7e-23 112.8 283 33.2
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 4.3e-22 110.5 334 31.4
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 7.4e-22 109.8 335 29.9
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 7.4e-22 109.8 334 29.3
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 9.6e-22 109.4 335 31.6
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.3e-21 109.0 280 32.5
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 1.6e-21 108.6 117 52.1
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 1.6e-21 108.6 335 33.7
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 1.1e-20 105.9 276 29.7
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 4.0e-20 104.0 332 26.2
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 9.0e-20 102.8 290 30.3
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.5e-19 102.1 305 29.5
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 4.9e-18 97.1 112 51.8
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.1e-17 95.9 190 35.3
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 1.4e-17 95.5 306 30.1
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 1.4e-17 95.5 306 30.1
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 9.3e-17 92.8 87 58.6
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 2.1e-16 91.7 274 32.5
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 4.6e-16 90.5 269 28.6
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 6.0e-16 90.1 333 27.3
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 7.9e-16 89.7 335 27.8
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.0e-15 87.8 335 33.1
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 8.7e-15 86.3 294 25.5
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 1.9e-14 85.1 107 44.9
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 2.5e-14 84.7 335 27.2
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 9.6e-14 82.8 83 51.8
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 1.3e-13 82.4 273 27.8
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 1.6e-13 82.0 91 51.6
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 2.8e-13 81.3 272 31.6
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 3.7e-13 80.9 332 23.8
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 8.2e-13 79.7 80 51.2
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 4.5e-11 73.9 327 23.2
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.9e-11 73.6 105 46.7
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 7.6e-11 73.2 68 58.8
BraA01t03868Z Brassica rapa HOM05D004642 ORTHO05D005466 1.1e-09 69.3 219 30.1
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.4e-09 68.9 61 62.3
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 7.2e-09 66.6 90 38.9
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 2.1e-08 65.1 54 68.5
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 2.7e-08 64.7 335 22.7
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 7.9e-08 63.2 335 23.0
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 3.9e-07 60.8 70 45.7
Cpa.g.sc1188.1 Carica papaya HOM05D004642 ORTHO05D005466 5.1e-07 60.5 58 56.9
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.1e-06 59.3 335 34.9
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 3.3e-06 57.8 284 25.7
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 4.3e-06 57.4 302 25.5
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 9.7e-06 56.2 335 22.7


User provided reference genes

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