Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 2.4e-50 201.8 99 100.0
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 4.0e-45 184.5 99 91.9
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 6.8e-45 183.7 99 88.9
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 8.8e-45 183.3 99 89.9
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 8.3e-43 176.8 99 87.9
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.4e-42 175.3 96 88.5
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 3.1e-42 174.9 97 86.6
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 4.1e-42 174.5 92 91.3
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 1.6e-41 172.6 99 83.8
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 1.0e-40 169.9 118 73.7
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 2.3e-40 168.7 98 81.6
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 2.9e-40 168.3 99 80.8
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 3.8e-40 167.9 99 82.8
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 3.8e-40 167.9 97 84.5
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 3.8e-40 167.9 97 84.5
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 5.0e-40 167.5 99 78.8
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 8.6e-40 166.8 98 80.6
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 8.6e-40 166.8 99 80.8
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.9e-39 165.6 100 82.0
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.9e-39 165.6 91 84.6
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.9e-39 165.6 99 81.8
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.9e-39 165.6 100 81.0
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 3.2e-39 164.9 102 78.4
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 4.2e-39 164.5 99 81.8
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 4.2e-39 164.5 93 81.7
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 9.5e-39 163.3 96 83.3
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 9.5e-39 163.3 97 83.5
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.2e-38 162.9 97 81.4
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.2e-38 162.9 92 82.6
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.6e-38 162.5 100 79.0
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 2.1e-38 162.2 99 78.8
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.1e-38 162.2 99 78.8
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.1e-38 162.2 91 85.7
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.1e-38 162.2 92 81.5
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 2.1e-38 162.2 92 81.5
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 2.1e-38 162.2 93 79.6
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.1e-38 162.2 100 79.0
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 2.1e-38 162.2 99 78.8
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 2.8e-38 161.8 98 78.6
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.6e-38 161.4 91 83.5
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 3.6e-38 161.4 91 83.5
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 3.6e-38 161.4 91 83.5
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.7e-38 161.0 97 78.4
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 4.7e-38 161.0 99 79.8
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 8.0e-38 160.2 90 85.6
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 8.0e-38 160.2 92 81.5
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 8.0e-38 160.2 92 81.5
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.0e-37 159.8 89 84.3
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 4.0e-37 157.9 99 74.7
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 6.8e-37 157.1 97 79.4
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 8.8e-37 156.8 89 83.1
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 8.8e-37 156.8 95 75.8
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 2.0e-36 155.6 96 76.0
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 3.4e-36 154.8 91 79.1
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 4.4e-36 154.5 91 79.1
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 4.4e-36 154.5 91 82.4
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 7.5e-36 153.7 95 74.7
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 7.5e-36 153.7 85 83.5
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.3e-35 152.9 92 79.3
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 2.2e-35 152.1 91 81.3
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.8e-35 151.8 99 72.7
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 4.9e-35 151.0 95 73.7
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 4.9e-35 151.0 97 72.2
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 8.3e-35 150.2 92 77.2
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.1e-34 149.8 93 76.3
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.4e-34 149.4 99 74.7
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.8e-34 149.1 97 72.2
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.4e-34 148.7 97 72.2
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 2.4e-34 148.7 118 65.3
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 3.1e-34 148.3 96 74.0
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 3.1e-34 148.3 96 74.0
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 3.1e-34 148.3 79 84.8
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 4.1e-34 147.9 98 72.4
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 4.1e-34 147.9 98 72.4
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 7.0e-34 147.1 99 66.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 7.0e-34 147.1 99 66.7
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 7.0e-34 147.1 99 66.7
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 7.0e-34 147.1 93 75.3
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 9.2e-34 146.7 99 66.7
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.2e-33 146.4 89 78.7
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.2e-33 146.4 95 71.6
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.2e-33 146.4 96 72.9
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.2e-33 146.4 79 81.0
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 1.6e-33 146.0 96 72.9
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.6e-33 146.0 95 71.6
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 2.0e-33 145.6 99 66.7
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 2.0e-33 145.6 99 67.7
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 2.0e-33 145.6 89 77.5
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 7.8e-33 143.7 95 69.5
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.3e-32 142.9 99 65.7
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.3e-32 142.1 92 70.7
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 3.8e-32 141.4 93 67.7
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 3.8e-32 141.4 97 66.0
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 3.8e-32 141.4 97 66.0
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 5.0e-32 141.0 96 65.6
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-31 139.8 97 64.9
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.1e-31 139.8 97 64.9
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.1e-31 139.8 89 71.9
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 2.1e-30 135.6 86 68.6
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 2.1e-30 135.6 86 68.6
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.8e-29 132.5 88 67.0
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 3.0e-29 131.7 86 67.4
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 6.8e-29 130.6 88 67.0
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 3.4e-28 128.3 68 85.3
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 4.4e-28 127.9 66 84.8
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 9.8e-28 126.7 66 81.8
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 1.3e-27 126.3 93 61.3
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 6.4e-27 124.0 66 81.8
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 9.2e-26 120.2 65 81.5
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 1.6e-25 119.4 83 68.7
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.6e-25 119.4 72 76.4
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.6e-25 117.9 86 69.8
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.7e-24 115.9 90 57.8
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.9e-23 112.5 91 62.6
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 9.5e-23 110.2 63 76.2
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.6e-22 109.4 74 64.9
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.1e-22 109.0 66 72.7
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 2.3e-21 105.5 63 74.6
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.0e-21 104.8 53 84.9
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 4.0e-21 104.8 62 75.8
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 8.9e-21 103.6 60 85.0
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.2e-20 103.2 86 52.3
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 3.4e-20 101.7 84 56.0
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 4.4e-20 101.3 64 75.0
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 9.8e-20 100.1 74 70.3
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 6.4e-19 97.4 63 66.7
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.9e-18 95.9 64 65.6
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 2.0e-17 92.4 67 65.7
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 4.3e-15 84.7 55 72.7
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.1e-14 82.4 66 60.6
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.8e-13 79.3 91 41.8
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.8e-13 79.3 82 45.1
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 4.0e-13 78.2 82 48.8
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 9.9e-12 73.6 33 90.9
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 2.2e-11 72.4 80 47.5
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 2.5e-07 58.9 65 41.5


User provided reference genes

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