Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 0.0e+00 2241.5 1157 100.0
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 0.0e+00 1576.6 1161 70.5
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 0.0e+00 1549.3 1216 67.9
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1518.8 1159 68.8
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 0.0e+00 1502.3 1149 68.6
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 0.0e+00 1496.9 1150 68.3
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 0.0e+00 1449.5 1161 65.2
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 0.0e+00 1431.4 1233 62.4
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 0.0e+00 1404.8 1162 63.9
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 0.0e+00 1400.6 1150 64.7
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 0.0e+00 1383.6 1152 63.5
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 0.0e+00 1382.9 1163 63.6
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 0.0e+00 1375.1 1162 61.5
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 0.0e+00 1373.2 1168 63.3
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 0.0e+00 1372.5 1151 63.2
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 0.0e+00 1356.7 1007 69.2
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1352.8 1153 62.0
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 0.0e+00 1351.7 1159 61.8
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 0.0e+00 1343.6 1159 61.8
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 0.0e+00 1343.2 1160 61.5
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 0.0e+00 1341.6 1153 62.2
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 0.0e+00 1332.0 1159 59.4
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 0.0e+00 1318.1 1153 59.7
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 0.0e+00 1315.8 1153 59.5
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 0.0e+00 1311.2 1160 59.8
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1308.5 1160 59.7
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1304.7 1153 60.0
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 0.0e+00 1285.0 1154 59.4
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 0.0e+00 1279.6 1155 59.8
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1272.7 1153 59.4
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 0.0e+00 1271.5 1164 58.5
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 0.0e+00 1261.9 1150 58.8
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 0.0e+00 1258.0 1161 58.5
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 0.0e+00 1236.5 1157 57.6
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1235.3 1155 58.6
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 0.0e+00 1231.5 1163 58.6
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 0.0e+00 1230.3 1136 58.5
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 0.0e+00 1229.5 1162 57.6
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 0.0e+00 1229.2 1155 56.6
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1224.9 1170 56.6
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 0.0e+00 1223.4 1170 56.7
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 0.0e+00 1222.2 1162 57.5
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 0.0e+00 1220.3 1235 54.7
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1216.4 1161 56.8
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 0.0e+00 1208.0 1120 57.7
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 0.0e+00 1201.4 1099 58.1
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 0.0e+00 1197.6 1151 56.8
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 0.0e+00 1196.8 1151 56.1
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 0.0e+00 1196.4 1151 57.0
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 0.0e+00 1194.1 1150 55.0
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 0.0e+00 1191.8 1155 55.8
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 0.0e+00 1188.3 1159 56.2
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 0.0e+00 1169.5 1068 58.9
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 0.0e+00 1166.4 1106 56.3
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1164.4 1155 54.5
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 0.0e+00 1151.0 1162 54.7
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 0.0e+00 1143.3 1039 57.9
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 0.0e+00 1140.2 1071 57.3
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 0.0e+00 1139.8 1145 54.9
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 0.0e+00 1136.7 1129 55.0
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 0.0e+00 1136.3 1160 53.8
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 0.0e+00 1131.3 1161 53.7
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1127.1 1147 54.4
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 0.0e+00 1116.3 1155 53.5
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 0.0e+00 1115.9 1148 53.7
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 0.0e+00 1106.7 1159 52.8
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 0.0e+00 1082.4 1099 54.8
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 7.1e-311 1070.8 1107 54.2
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 7.3e-308 1060.8 1153 51.8
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 3.6e-307 1058.5 1174 50.7
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 6.2e-307 1057.7 1138 52.2
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.2e-306 1054.7 1062 55.8
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.0e-305 1052.7 1161 50.1
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 3.4e-305 1052.0 1160 49.9
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 3.8e-304 1048.5 1157 49.5
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 6.0e-302 1041.2 1142 50.7
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 3.9e-301 1038.5 1160 49.3
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.5e-300 1035.8 1157 49.3
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 9.6e-300 1033.9 1157 49.5
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 6.2e-299 1031.2 1158 49.2
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 3.1e-298 1028.9 1158 49.2
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 3.4e-297 1025.4 1149 48.9
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 5.8e-297 1024.6 1157 49.2
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 9.9e-297 1023.8 1153 51.6
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.9e-296 1022.3 1149 48.6
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 2.9e-296 1022.3 1168 49.3
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 1.7e-288 996.5 1157 48.4
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.3e-284 982.2 952 55.9
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 4.5e-281 971.8 1145 48.7
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 7.9e-278 961.1 1073 51.2
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 7.9e-278 961.1 904 55.1
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 5.3e-266 921.8 937 54.3
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 5.3e-266 921.8 1163 45.0
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 1.3e-251 874.0 1165 43.2
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.7e-184 651.0 1057 39.4
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 4.3e-175 619.8 453 71.7
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 9.7e-151 538.9 699 46.2
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 1.1e-149 535.4 1205 32.4
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 4.4e-143 513.5 658 44.5
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 1.2e-137 495.4 1192 30.6
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.0e-136 492.3 336 75.3
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.6e-135 487.6 436 60.6
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.6e-132 478.4 510 51.4
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.7e-129 466.8 526 46.6
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 7.5e-111 406.4 1147 28.7
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.6e-108 398.7 451 49.7
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 2.1e-105 388.3 445 48.8
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 9.5e-90 336.3 232 72.4
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 5.6e-74 283.9 233 60.9
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 4.0e-72 277.7 1305 24.7
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 1.5e-71 275.8 203 70.4
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 9.9e-71 273.1 265 57.4
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.7e-67 262.3 315 50.8
Cpa.g.sc25.4 Carica papaya HOM05D002451 ORTHO05D005601 1.5e-66 259.2 155 76.1
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 4.0e-64 251.1 338 44.7
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.8e-63 247.3 227 57.7
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 9.3e-61 240.0 180 66.7
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 1.5e-47 196.1 184 57.1
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 2.8e-41 175.3 159 52.8
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 2.6e-39 168.7 119 71.4
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.7e-38 166.0 127 69.3
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.7e-35 154.1 96 85.4
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 6.7e-35 154.1 96 85.4
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 6.7e-35 154.1 172 50.6
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.8e-32 146.0 132 58.3
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 6.9e-32 144.1 180 47.2
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.3e-30 139.8 123 59.3
A06p15140 Brassica napus HOM05D002451 ORTHO05D020166 1.2e-28 133.3 150 49.3
BraA06t24629Z Brassica rapa HOM05D002451 ORTHO05D020166 1.2e-28 133.3 150 49.3
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 1.0e-27 130.2 119 53.8
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 1.4e-27 129.8 162 43.8
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 1.1e-26 126.7 102 66.7
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 9.7e-26 123.6 282 34.4
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.3e-25 123.2 123 51.2
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 3.7e-25 121.7 1296 20.1
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 9.1e-24 117.1 93 65.6
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 4.2e-21 108.2 127 46.5
SHI11090 Sapria himalayana HOM05D002451 ORTHO05D005601 3.9e-19 101.7 63 60.3
SHI11089 Sapria himalayana HOM05D002451 ORTHO05D005601 1.3e-17 96.7 80 58.8
Cre13.g605050 Chlamydomonas reinhardtii HOM05D002451 ORTHO05D005601 1.8e-16 92.8 143 37.1
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 2.4e-16 92.4 90 48.9
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 1.2e-15 90.1 55 78.2
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 1.3e-14 86.7 59 69.5
SGA_v2.0_scaffold123G33404 Striga asiatica HOM05D002451 ORTHO05D005601 2.9e-14 85.5 92 48.9
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 6.5e-14 84.3 106 48.1
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 1.1e-13 83.6 125 43.2
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 1.9e-13 82.8 73 58.9
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.5e-13 82.4 57 71.9
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 5.5e-13 81.3 61 68.9
Medtr5g055460 Medicago truncatula HOM05D002451 ORTHO05D005601 1.8e-11 76.3 144 34.7


User provided reference genes

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