Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 6.7e-129 464.2 257 100.0
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 8.5e-108 394.0 253 86.6
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.4e-104 381.7 254 83.1
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 1.7e-103 379.8 257 84.0
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 1.4e-102 376.7 254 81.9
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 7.7e-101 370.9 254 81.5
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 1.0e-100 370.5 254 81.1
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 1.5e-99 366.7 267 79.4
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 2.5e-99 365.9 257 79.0
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.3e-99 365.5 257 80.2
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 1.6e-98 363.2 260 79.6
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 2.1e-98 362.8 254 79.5
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 2.8e-98 362.5 252 80.6
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.6e-98 362.1 255 78.8
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 6.1e-98 361.3 257 78.6
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 8.0e-98 360.9 257 79.4
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 3.0e-97 359.0 255 80.8
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 3.0e-97 359.0 251 79.3
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 6.8e-97 357.8 255 80.4
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 6.8e-97 357.8 251 78.9
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 2.6e-96 355.9 254 77.6
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 2.6e-96 355.9 257 77.8
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 2.6e-96 355.9 247 82.2
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 7.5e-96 354.4 255 77.3
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 7.5e-96 354.4 254 79.5
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 8.3e-95 350.9 258 79.8
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 3.2e-94 349.0 253 77.1
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 5.4e-94 348.2 254 76.8
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 7.0e-94 347.8 256 76.6
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 2.0e-93 346.3 247 80.2
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 2.7e-93 345.9 256 75.0
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 5.0e-92 341.7 240 79.2
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 6.6e-92 341.3 254 75.2
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.1e-91 340.5 251 77.3
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.5e-91 340.1 244 74.6
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 3.3e-91 339.0 258 74.4
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.8e-90 335.9 257 75.5
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 8.0e-90 334.3 257 75.9
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 1.0e-89 334.0 258 73.6
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.0e-89 334.0 253 76.7
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 1.4e-89 333.6 246 78.0
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.8e-89 333.2 255 76.5
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 4.0e-89 332.0 256 75.8
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 2.0e-88 329.7 249 75.1
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 5.8e-88 328.2 251 75.3
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 5.8e-88 328.2 257 74.3
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 5.8e-88 328.2 251 76.1
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.3e-87 327.0 252 77.0
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 2.9e-87 325.9 255 73.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 6.4e-87 324.7 258 72.5
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 6.4e-87 324.7 251 75.7
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.4e-86 323.6 258 71.7
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 4.1e-86 322.0 257 70.0
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 7.0e-86 321.2 259 72.6
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.0e-85 319.7 257 72.8
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.0e-85 319.7 277 71.1
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 6.0e-85 318.2 247 70.4
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.0e-84 317.4 244 73.8
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 1.0e-84 317.4 258 70.5
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.3e-84 317.0 257 72.4
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 1.3e-84 317.0 216 74.5
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.7e-84 316.6 273 68.1
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 2.3e-84 316.2 258 72.1
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 5.0e-84 315.1 254 71.7
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 5.0e-84 315.1 258 72.1
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.1e-83 313.9 259 73.0
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.1e-83 313.9 254 70.5
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 1.9e-83 313.2 257 72.4
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.9e-83 313.2 259 72.2
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 3.3e-83 312.4 253 72.3
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 5.6e-83 311.6 257 72.8
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 9.5e-83 310.8 254 69.3
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 9.5e-83 310.8 259 71.8
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 2.8e-82 309.3 253 68.8
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 2.8e-82 309.3 257 70.4
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.4e-81 307.0 253 68.4
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.4e-81 307.0 251 72.1
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 1.8e-81 306.6 253 71.5
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 3.1e-81 305.8 243 70.4
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 6.8e-81 304.7 192 80.2
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 8.9e-81 304.3 247 71.3
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 1.5e-80 303.5 348 54.6
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.0e-80 303.1 244 70.9
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 5.8e-80 301.6 247 70.4
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 7.5e-80 301.2 250 69.2
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.3e-79 300.4 248 70.2
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 1.3e-79 300.4 202 76.7
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.2e-79 299.7 248 69.8
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 1.4e-78 297.0 248 68.5
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 9.2e-78 294.3 230 67.8
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 3.5e-77 292.4 249 68.3
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 7.8e-77 291.2 238 70.2
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-76 290.8 237 69.6
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.3e-76 290.4 248 68.5
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.7e-76 290.0 249 67.9
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 5.1e-76 288.5 250 68.4
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 6.6e-76 288.1 238 69.3
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 3.3e-75 285.8 244 69.3
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 9.5e-75 284.3 298 61.1
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.1e-74 283.1 255 67.5
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 6.2e-74 281.6 244 66.8
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.1e-73 280.8 262 64.9
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.4e-73 280.4 257 66.9
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.2e-72 277.3 257 66.1
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.5e-72 276.9 335 54.3
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 7.6e-72 274.6 251 64.9
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 2.9e-71 272.7 246 65.9
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 4.9e-71 271.9 247 66.0
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 3.2e-70 269.2 247 67.2
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 4.1e-70 268.9 255 61.2
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 1.1e-67 260.8 249 63.5
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.6e-66 256.9 283 56.2
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 6.2e-66 255.0 176 73.9
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 4.4e-64 248.8 252 59.9
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.6e-64 248.1 249 59.4
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.9e-62 243.4 149 85.2
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 9.3e-62 241.1 252 57.9
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 2.1e-61 240.0 244 60.7
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 2.8e-58 229.6 213 61.0
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.8e-56 221.9 248 54.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 1.7e-55 220.3 249 56.6
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.2e-53 214.2 248 56.5
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.8e-52 210.3 136 80.9
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.1e-51 207.6 241 49.4
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 7.6e-48 194.9 129 75.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.2e-45 187.6 149 77.9
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 1.0e-44 184.5 167 64.7
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 1.6e-42 177.2 146 67.1
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 5.3e-41 172.2 137 66.4
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 7.6e-40 168.3 257 43.6
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 4.1e-33 146.0 342 39.8
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 5.9e-32 142.1 190 45.8
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.0e-31 141.4 194 55.2
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.9e-30 137.1 119 73.9
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 4.2e-30 136.0 202 38.6
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 1.0e-28 131.3 220 39.1
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.7e-27 125.6 109 69.7
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 3.7e-26 122.9 71 87.3
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 6.3e-26 122.1 239 36.0
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.7e-23 114.0 92 62.0
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 7.9e-21 105.1 58 84.5
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 2.6e-19 100.1 79 62.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 2.8e-18 96.7 79 60.8
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 4.5e-16 89.4 82 72.0
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 2.0e-08 63.9 62 54.8
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 4.5e-08 62.8 163 31.9
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 7.7e-08 62.0 53 62.3
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.0e-07 61.6 185 30.3
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.5e-06 57.8 34 73.5
TAR497G0002 Trochodendron aralioides HOM05D005017 ORTHO05D006044 2.5e-06 57.0 31 87.1


User provided reference genes

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