Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 0.0e+00 2185.6 1212 100.0
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 0.0e+00 1580.8 1249 77.3
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 0.0e+00 1204.1 1287 61.8
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 0.0e+00 1201.8 1257 62.5
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 0.0e+00 1176.0 1220 61.8
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 0.0e+00 1136.7 1253 57.5
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 0.0e+00 1123.6 1207 61.6
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 0.0e+00 1122.1 1280 58.6
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 0.0e+00 1109.4 1276 59.2
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 0.0e+00 1085.1 1260 58.3
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 0.0e+00 1082.4 1264 57.4
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 5.1e-304 1048.1 1285 56.3
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 4.1e-301 1038.5 1216 56.8
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 2.1e-297 1026.2 1264 55.7
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 1.1e-295 1020.4 1259 54.6
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 5.5e-290 1001.5 1208 58.0
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 2.3e-288 996.1 1241 56.1
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 8.8e-288 994.2 1066 61.0
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 4.8e-286 988.4 1261 54.0
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-284 983.8 1273 54.9
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 5.9e-284 981.5 1261 53.5
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 3.8e-283 978.8 1261 53.8
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.1e-282 977.2 1262 53.8
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.2e-281 973.8 1269 54.2
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 6.1e-281 971.5 1251 53.9
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 5.2e-280 968.4 1248 55.3
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 5.4e-277 958.4 1268 54.3
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 1.6e-276 956.8 1299 52.9
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.9e-274 949.9 1270 54.1
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 5.5e-274 948.3 1263 54.2
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 5.7e-271 938.3 1252 52.2
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 1.8e-269 933.3 1265 53.1
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.0e-267 927.5 1272 53.0
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 1.9e-266 923.3 1260 52.8
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 3.3e-266 922.5 1257 53.0
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 7.3e-266 921.4 1256 52.8
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 6.1e-265 918.3 1262 52.5
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 1.5e-263 913.7 1262 51.2
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 5.8e-263 911.8 1259 52.0
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 2.9e-262 909.4 1260 52.3
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 4.6e-260 902.1 1262 52.1
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 3.0e-259 899.4 1259 52.4
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 3.0e-259 899.4 1276 51.1
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 5.6e-258 895.2 1262 50.4
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 6.2e-257 891.7 1407 47.1
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 4.0e-256 889.0 1259 50.4
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 1.3e-254 884.0 1169 54.0
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 1.1e-253 880.9 1275 51.9
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 9.2e-253 877.9 1256 50.1
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 1.7e-251 873.6 1190 51.4
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 6.6e-251 871.7 1251 49.8
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 7.5e-247 858.2 1255 49.8
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 2.1e-244 850.1 1301 50.3
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.2e-241 840.9 1264 51.0
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 5.8e-239 832.0 1259 49.0
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 3.8e-238 829.3 1110 52.1
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 6.4e-238 828.6 1258 48.9
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 2.3e-235 820.1 1259 45.6
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 1.1e-234 817.8 1253 49.2
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 3.1e-232 809.7 1259 49.7
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 4.4e-231 805.8 1237 48.6
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 3.5e-228 796.2 1177 50.3
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 5.3e-224 782.3 852 63.6
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 1.3e-211 741.1 1298 46.2
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 5.1e-211 739.2 1285 48.0
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 2.8e-209 733.4 1251 48.0
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 8.2e-209 731.9 1263 47.3
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 4.0e-208 729.6 1234 43.8
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 3.4e-199 699.9 1254 45.5
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 5.0e-198 696.0 1196 46.9
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 5.5e-197 692.6 1039 46.7
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 4.6e-196 689.5 883 51.2
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 1.4e-192 677.9 1301 41.2
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 1.2e-188 664.8 1249 44.6
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.3e-187 660.6 1288 40.8
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 5.7e-186 656.0 1248 44.5
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 3.8e-182 643.3 1246 45.7
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 5.9e-175 619.4 1054 44.9
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 4.0e-171 606.7 1212 40.6
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 1.2e-170 605.1 1236 40.3
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 1.3e-166 591.7 1215 41.2
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 5.0e-166 589.7 1033 46.7
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 1.0e-158 565.5 743 58.1
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 1.9e-157 561.2 1269 42.1
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 1.6e-156 558.1 1246 40.8
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 6.1e-156 556.2 1154 44.2
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 8.3e-153 545.8 1296 40.4
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 4.7e-148 530.0 1260 36.1
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 2.3e-147 527.7 1254 39.1
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 8.3e-145 519.2 1292 39.2
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 2.5e-141 507.7 1217 39.4
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 3.3e-141 507.3 582 54.5
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 2.1e-140 504.6 1244 40.3
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 1.4e-136 491.9 1261 39.6
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 5.6e-133 479.9 1261 37.3
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.8e-131 474.9 1264 37.7
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 1.6e-127 461.8 1260 36.4
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 1.1e-125 455.7 1260 36.3
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 1.1e-125 455.7 1260 36.3
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 1.5e-125 455.3 1260 36.2
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 2.1e-124 451.4 1261 36.0
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 1.3e-118 432.2 428 59.3
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 3.9e-110 404.1 1136 37.1
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 6.6e-110 403.3 1281 36.0
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 2.0e-106 391.7 323 68.4
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 4.5e-106 390.6 751 38.9
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 8.4e-105 386.3 1291 35.6
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 6.7e-102 376.7 434 53.2
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 8.7e-102 376.3 1042 33.0
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 4.6e-95 354.0 1058 36.9
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 5.0e-81 307.4 1356 31.3
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 6.5e-81 307.0 275 63.3
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 6.1e-79 300.4 1148 31.1
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 7.7e-74 283.5 345 52.5
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 1.6e-71 275.8 1326 30.8
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 7.9e-71 273.5 1041 33.1
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 1.4e-70 272.7 1258 31.4
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 5.7e-61 240.7 222 61.3
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 1.8e-51 209.1 197 62.4
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 1.2e-50 206.5 221 56.1
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 3.5e-50 204.9 438 37.9
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 2.6e-45 188.7 392 37.8
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 4.2e-40 171.4 393 35.9
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 8.9e-38 163.7 465 30.1
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.4e-35 156.4 130 74.6
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 5.4e-35 154.5 122 70.5
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 3.5e-34 151.8 137 64.2
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.3e-33 149.1 699 27.3
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 3.6e-31 141.7 250 40.4
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 5.8e-29 134.4 126 68.3
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 9.8e-29 133.7 743 27.6
HPP92_028292 Vanilla planifolia HOM05D004845 ORTHO05D005957 2.5e-24 119.0 679 34.6
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.4e-22 113.2 64 79.7
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 2.9e-20 105.5 220 36.4
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 8.3e-20 104.0 137 44.5
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 1.1e-19 103.6 125 57.6
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 1.5e-16 93.2 97 46.4
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 3.3e-16 92.0 193 35.2
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 4.0e-14 85.1 60 63.3
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 6.8e-14 84.3 155 42.6
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 8.4e-12 77.4 156 36.5
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 2.1e-10 72.8 55 70.9
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 5.1e-09 68.2 43 72.1
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 3.3e-08 65.5 137 35.0


User provided reference genes

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