Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 6.6e-168 594.0 301 100.0
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 4.8e-118 428.3 271 81.2
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 4.1e-93 345.5 271 68.6
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.9e-91 339.3 239 74.1
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.5e-87 327.0 271 64.9
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 7.5e-87 324.7 271 64.6
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 1.7e-86 323.6 235 74.0
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 2.4e-85 319.7 271 63.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.8e-80 303.5 238 67.6
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 2.0e-79 300.1 271 61.6
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 2.6e-79 299.7 271 62.0
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.7e-78 297.0 272 61.4
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.4e-77 293.1 244 64.8
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.5e-74 283.1 192 77.1
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 3.3e-74 282.7 271 60.5
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 2.8e-73 279.6 255 60.8
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 5.2e-72 275.4 274 59.9
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 2.2e-70 270.0 273 58.6
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 2.8e-70 269.6 273 58.6
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 8.3e-70 268.1 278 57.9
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 1.4e-69 267.3 271 57.6
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 7.0e-69 265.0 271 56.8
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.2e-68 264.2 211 66.8
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 2.0e-68 263.5 275 57.8
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 2.0e-68 263.5 271 56.8
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 3.5e-68 262.7 271 56.8
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 7.8e-68 261.5 282 55.7
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.0e-67 261.2 272 56.6
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 2.3e-67 260.0 276 57.2
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.0e-67 258.8 238 60.5
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 8.6e-67 258.1 162 82.7
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.5e-66 257.3 275 56.0
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.9e-66 256.9 271 54.2
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 5.6e-66 255.4 271 53.9
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.6e-66 255.4 270 54.8
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 1.2e-65 254.2 276 54.0
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.2e-65 254.2 352 47.4
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.6e-65 253.8 166 79.5
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 2.8e-65 253.1 176 75.0
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.0e-65 251.5 227 62.1
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.4e-64 250.8 273 54.9
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.4e-64 250.8 158 80.4
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.4e-64 250.8 158 80.4
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.4e-64 250.8 213 65.3
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.8e-64 250.4 271 56.5
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.8e-64 250.4 271 56.5
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 2.3e-64 250.0 222 63.5
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.2e-63 247.7 271 54.6
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 1.5e-63 247.3 166 75.9
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.6e-63 246.5 239 59.8
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 2.6e-63 246.5 157 80.3
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 3.4e-63 246.1 248 58.9
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 4.4e-63 245.7 272 53.3
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 7.5e-63 245.0 273 55.7
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.8e-63 244.6 158 80.4
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.8e-63 244.6 272 56.6
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 9.8e-63 244.6 163 77.3
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 1.3e-62 244.2 157 80.3
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 1.3e-62 244.2 157 80.3
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-62 243.8 158 81.0
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 2.2e-62 243.4 192 66.1
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 2.2e-62 243.4 157 79.6
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 2.9e-62 243.0 269 52.8
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.9e-62 243.0 158 80.4
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 3.7e-62 242.7 168 75.6
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 4.9e-62 242.3 162 79.0
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 8.3e-62 241.5 181 71.3
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 8.3e-62 241.5 163 76.1
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.1e-61 241.1 171 71.9
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.1e-61 241.1 167 76.0
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 2.4e-61 240.0 171 71.3
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 2.4e-61 240.0 171 71.3
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 3.2e-61 239.6 271 54.6
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 4.1e-61 239.2 144 84.7
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 4.1e-61 239.2 272 52.2
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 5.4e-61 238.8 173 71.1
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 5.4e-61 238.8 173 71.1
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.2e-60 237.7 172 69.2
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.6e-60 237.3 232 55.6
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 3.5e-60 236.1 160 76.2
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 3.5e-60 236.1 239 57.3
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 3.5e-60 236.1 161 75.8
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 4.6e-60 235.7 168 70.2
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 6.0e-60 235.3 168 70.2
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 6.0e-60 235.3 165 73.9
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 7.8e-60 235.0 162 74.1
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 7.8e-60 235.0 158 74.7
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.0e-59 234.6 163 72.4
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.0e-59 234.6 159 74.2
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.3e-59 234.2 165 73.3
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 1.7e-59 233.8 219 58.0
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.7e-59 233.8 278 55.0
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 3.9e-59 232.6 250 55.6
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 3.9e-59 232.6 171 69.0
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 5.0e-59 232.3 165 73.3
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.5e-58 230.7 165 72.1
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 1.5e-58 230.7 272 52.6
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.9e-58 230.3 173 69.4
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.9e-58 230.3 149 80.5
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.5e-58 229.9 154 74.7
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 3.3e-58 229.6 158 74.1
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.1e-57 226.9 176 70.5
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 2.1e-57 226.9 219 56.2
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 2.8e-57 226.5 161 72.7
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 3.6e-57 226.1 158 74.1
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.7e-57 225.7 155 74.2
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 4.7e-57 225.7 155 74.2
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.1e-56 224.6 171 69.0
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.8e-56 223.8 166 69.9
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 4.0e-56 222.6 159 74.2
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 4.0e-56 222.6 159 74.2
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 9.8e-55 218.0 156 75.0
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 9.8e-55 218.0 156 75.0
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 9.8e-55 218.0 170 67.6
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.1e-53 214.5 165 68.5
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 1.9e-53 213.8 160 70.6
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.9e-53 213.8 151 74.8
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 3.2e-53 213.0 158 69.6
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.2e-53 213.0 152 73.0
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 7.0e-53 211.8 158 71.5
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.6e-52 210.7 152 72.4
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 1.3e-51 207.6 155 73.5
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 5.1e-51 205.7 171 62.6
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.3e-50 202.6 272 46.7
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.3e-50 201.8 152 69.7
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 1.1e-48 198.0 239 52.3
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 2.3e-48 196.8 149 66.4
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.0e-47 193.7 154 66.9
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 2.6e-47 193.4 152 64.5
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.9e-46 189.9 153 66.0
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 3.2e-45 186.4 164 62.2
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 6.0e-44 182.2 153 60.1
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.7e-43 180.6 110 85.5
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 2.8e-41 173.3 110 78.2
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 5.2e-40 169.1 156 59.0
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.6e-39 165.2 105 81.0
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.7e-38 164.1 123 70.7
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-38 164.1 102 82.4
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 9.2e-37 158.3 137 64.2
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.8e-31 139.0 123 64.2
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 7.6e-31 138.7 107 70.1
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.7e-30 137.5 161 50.3
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.7e-30 137.5 161 50.3
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 1.2e-28 131.3 117 60.7
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 3.0e-27 126.7 120 59.2
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 9.6e-26 121.7 118 55.9
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 1.3e-22 111.3 120 52.5
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.5e-15 87.8 207 35.7
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 6.4e-14 82.4 45 91.1
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 4.6e-12 76.3 56 67.9
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 4.3e-10 69.7 174 32.8
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.4e-10 68.9 162 35.8
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 2.1e-09 67.4 51 64.7
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.4e-08 64.7 41 75.6
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.7e-06 57.8 137 34.3
BcaB04g18771 Brassica carinata HOM05D004368 ORTHO05D004990 4.9e-06 56.2 52 50.0


User provided reference genes

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