Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 1.8e-72 275.8 136 100.0
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 4.6e-60 234.6 135 87.4
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 2.1e-36 156.0 138 57.2
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.7e-36 155.6 133 60.2
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 7.9e-36 154.1 136 61.8
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 3.9e-35 151.8 137 57.7
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 6.7e-35 151.0 140 58.6
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 8.7e-35 150.6 138 55.1
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.5e-34 149.8 136 57.4
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 2.5e-34 149.1 139 57.6
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 7.4e-34 147.5 127 58.3
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.3e-33 146.7 135 57.8
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.1e-32 143.7 135 48.9
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 2.4e-32 142.5 133 56.4
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 9.0e-32 140.6 136 56.6
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 1.5e-31 139.8 109 61.5
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.0e-31 139.4 113 66.4
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 3.4e-31 138.7 138 54.3
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 3.4e-31 138.7 136 51.5
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 5.8e-31 137.9 137 54.0
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 3.8e-30 135.2 138 54.3
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 6.5e-30 134.4 121 53.7
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 8.4e-30 134.0 134 50.0
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 5.5e-29 131.3 138 51.4
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 5.5e-29 131.3 139 56.1
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 9.3e-29 130.6 138 52.9
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 9.3e-29 130.6 114 55.3
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 2.1e-28 129.4 136 50.0
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 3.5e-28 128.6 136 55.9
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 7.9e-28 127.5 135 46.7
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 1.8e-27 126.3 134 49.3
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 1.8e-27 126.3 140 52.9
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 2.3e-27 125.9 147 49.0
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 3.0e-27 125.6 138 52.2
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 3.0e-27 125.6 138 52.2
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 3.9e-27 125.2 142 49.3
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 3.9e-27 125.2 114 57.9
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.1e-27 124.8 138 51.4
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.1e-27 124.8 138 52.2
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.1e-27 124.8 138 51.4
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.5e-26 123.2 118 51.7
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.5e-26 122.5 118 52.5
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 3.3e-26 122.1 139 56.8
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 9.7e-26 120.6 121 47.9
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 1.6e-25 119.8 119 55.5
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.8e-25 119.0 121 47.1
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.7e-25 118.6 110 54.5
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 4.8e-25 118.2 136 48.5
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 6.3e-25 117.9 110 54.5
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.4e-24 116.7 138 47.8
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 1.4e-24 116.7 136 45.6
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.1e-24 115.2 110 53.6
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 3.4e-23 112.1 86 64.0
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 5.9e-23 111.3 137 47.4
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 2.2e-22 109.4 131 47.3
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 2.2e-22 109.4 108 50.9
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 5.0e-22 108.2 137 47.4
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 6.5e-22 107.8 107 56.1
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 6.5e-22 107.8 137 47.4
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 6.5e-22 107.8 146 43.8
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 8.5e-22 107.5 145 47.6
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 8.5e-22 107.5 129 50.4
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.4e-21 106.7 119 56.3
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.4e-21 106.7 117 47.9
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 3.2e-21 105.5 139 46.0
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 4.2e-21 105.1 117 46.2
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 4.2e-21 105.1 117 46.2
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 7.2e-21 104.4 126 47.6
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 1.2e-20 103.6 113 51.3
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.2e-20 103.6 136 42.6
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 1.6e-20 103.2 145 46.2
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 1.6e-20 103.2 149 45.6
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 2.7e-20 102.4 124 50.0
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.0e-19 100.5 129 45.0
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 1.4e-19 100.1 124 44.4
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 1.4e-19 100.1 121 47.9
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.4e-19 100.1 66 65.2
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 1.8e-19 99.8 89 56.2
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.8e-19 99.8 125 48.8
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 8.8e-19 97.4 105 47.6
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 8.8e-19 97.4 142 43.7
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 1.9e-18 96.3 134 48.5
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.9e-18 96.3 141 40.4
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 2.5e-18 95.9 115 45.2
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 3.3e-18 95.5 142 42.3
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 4.3e-18 95.1 142 41.5
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 5.7e-18 94.7 123 47.2
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.3e-17 93.6 124 42.7
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 3.7e-17 92.0 125 41.6
Hund18641 Selenicereus undatus HOM05D005200 ORTHO05D005760 8.2e-17 90.9 118 43.2
Lalb_Chr17g0343251 Lupinus albus HOM05D005200 ORTHO05D005760 1.4e-16 90.1 135 40.7
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 3.1e-16 89.0 139 44.6
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 3.1e-16 89.0 116 43.1
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.9e-16 87.8 85 45.9
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 9.1e-16 87.4 121 43.0
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 1.2e-15 87.0 118 39.0
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 1.5e-15 86.7 99 47.5
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 1.5e-15 86.7 131 40.5
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 2.6e-15 85.9 90 51.1
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 3.4e-15 85.5 120 45.0
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 3.4e-15 85.5 115 51.3
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 3.4e-15 85.5 115 51.3
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 5.9e-15 84.7 76 53.9
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 5.9e-15 84.7 117 47.0
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 1.0e-14 84.0 77 54.5
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 1.3e-14 83.6 122 41.8
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 2.2e-14 82.8 121 38.0
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 2.9e-14 82.4 100 46.0
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 3.8e-14 82.0 100 46.0
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 3.8e-14 82.0 100 46.0
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 6.5e-14 81.3 108 42.6
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 6.5e-14 81.3 100 46.0
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 8.5e-14 80.9 91 52.7
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 8.5e-14 80.9 70 52.9
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 1.1e-13 80.5 103 43.7
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.1e-13 80.5 91 47.3
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.1e-13 80.5 103 41.7
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.1e-13 80.5 88 44.3
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 2.5e-13 79.3 121 41.3
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 3.2e-13 79.0 90 45.6
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 4.2e-13 78.6 91 46.2
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 5.5e-13 78.2 119 38.7
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 9.4e-13 77.4 88 44.3
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.2e-12 77.0 103 45.6
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.2e-12 77.0 103 45.6
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.2e-12 77.0 103 45.6
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 2.1e-12 76.3 93 43.0
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 2.7e-12 75.9 67 55.2
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 1.0e-11 73.9 102 41.2
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.8e-11 73.2 125 40.0
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 1.8e-11 73.2 126 38.1
Ah.15g094950 Amaranthus hybridus HOM05D005200 ORTHO05D005760 2.3e-11 72.8 122 36.1
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 3.3e-10 68.9 68 45.6
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 3.3e-10 68.9 124 38.7
MELO3C022697.2 Cucumis melo HOM05D005200 ORTHO05D005760 4.4e-10 68.6 122 36.1
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 2.2e-09 66.2 118 36.4
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 2.2e-09 66.2 90 41.1
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 6.3e-09 64.7 101 37.6
CSS0037124 Camellia sinensis var. sinensis HOM05D005200 ORTHO05D005760 8.2e-09 64.3 62 58.1
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.1e-08 62.4 54 55.6
Sed0016877 Sechium edule HOM05D005200 ORTHO05D005760 4.1e-08 62.0 86 41.9
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 9.1e-08 60.8 80 42.5
Os02g0782900 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.4e-07 58.9 105 33.3
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 5.9e-07 58.2 88 38.6
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 1.3e-06 57.0 34 67.6
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 5.0e-06 55.1 31 67.7


User provided reference genes

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