Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 5.6e-158 561.2 357 100.0
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.9e-129 466.5 351 85.5
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 6.1e-128 461.5 352 79.5
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 2.9e-114 416.0 366 75.4
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 1.3e-109 400.6 350 70.9
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 4.5e-107 392.1 349 73.9
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 8.5e-106 387.9 351 75.8
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 1.9e-105 386.7 352 72.7
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 2.1e-104 383.3 357 72.5
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.4e-103 380.6 355 75.2
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 9.7e-102 374.4 358 72.1
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.7e-101 373.6 354 70.3
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 6.3e-101 371.7 351 67.0
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 9.1e-100 367.9 352 71.3
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 2.2e-98 363.2 352 69.6
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.9e-98 362.8 357 67.8
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 3.2e-97 359.4 352 69.0
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 9.4e-97 357.8 349 67.3
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 2.7e-96 356.3 357 69.7
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 3.6e-96 355.9 355 70.1
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 6.1e-96 355.1 355 68.7
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 8.0e-96 354.8 351 72.1
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 5.2e-95 352.1 352 66.2
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.2e-91 340.9 332 72.9
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.2e-91 340.9 354 67.5
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 5.9e-91 338.6 347 66.9
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.0e-90 337.8 358 63.7
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 2.2e-90 336.7 302 73.8
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.9e-89 333.6 357 66.1
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 4.2e-89 332.4 350 64.9
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 7.2e-89 331.6 352 64.5
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 1.2e-88 330.9 355 62.8
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 5.2e-87 325.5 352 62.5
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.6e-86 323.2 366 65.3
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 3.7e-85 319.3 311 68.5
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 6.3e-85 318.5 349 66.8
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 8.3e-85 318.2 360 64.4
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 7.8e-83 311.6 352 63.4
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 6.6e-82 308.5 352 64.2
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 3.3e-81 306.2 355 63.1
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 5.6e-81 305.4 362 60.8
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 9.5e-81 304.7 355 62.8
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 2.1e-80 303.5 305 62.0
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 4.7e-80 302.4 357 59.9
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 4.7e-80 302.4 355 63.7
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.4e-79 300.8 354 63.6
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 5.2e-79 298.9 372 63.7
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 8.9e-79 298.1 356 60.4
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.2e-78 297.7 359 57.7
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 1.5e-78 297.4 354 60.2
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 5.7e-78 295.4 341 56.6
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.9e-77 293.1 304 65.1
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 4.9e-77 292.4 386 53.1
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.2e-75 287.7 359 62.1
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.6e-75 287.3 302 60.6
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.5e-75 286.2 352 62.8
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 3.9e-74 282.7 367 56.9
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 8.6e-74 281.6 337 58.2
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 1.5e-73 280.8 335 55.2
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 9.5e-73 278.1 350 52.3
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 9.5e-73 278.1 399 49.1
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.2e-72 277.7 458 46.1
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 1.6e-72 277.3 357 58.8
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 2.1e-72 276.9 352 61.9
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 6.8e-71 271.9 276 71.7
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 8.9e-71 271.6 352 57.1
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 6.4e-69 265.4 385 56.4
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 1.2e-67 261.2 353 56.4
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 3.5e-67 259.6 352 48.9
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 6.0e-67 258.8 353 55.8
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 7.8e-67 258.5 296 64.9
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 3.1e-63 246.5 355 56.3
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 5.2e-63 245.7 376 55.6
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 6.8e-63 245.4 308 63.0
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.9e-61 240.0 350 45.1
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 2.9e-61 240.0 351 45.6
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 6.4e-61 238.8 297 61.3
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 1.1e-60 238.0 353 47.3
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 2.4e-60 236.9 352 46.3
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 2.4e-60 236.9 390 53.3
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 2.4e-60 236.9 390 53.3
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.0e-58 231.5 351 44.4
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 5.1e-58 229.2 360 55.0
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 6.6e-58 228.8 318 51.6
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 4.4e-54 216.1 350 54.9
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 9.9e-54 214.9 217 65.4
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 4.9e-53 212.6 182 78.6
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 9.2e-52 208.4 352 43.8
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 6.6e-50 202.2 385 41.6
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.1e-49 201.4 356 44.9
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 1.1e-47 194.9 257 60.3
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 2.2e-45 187.2 178 62.9
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 2.1e-43 180.6 347 52.7
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 6.0e-43 179.1 349 53.3
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 1.7e-42 177.6 292 55.8
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 2.3e-42 177.2 347 49.9
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 2.3e-42 177.2 347 49.9
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 2.3e-42 177.2 347 49.9
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.3e-42 177.2 348 48.3
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 8.7e-42 175.3 260 60.4
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 4.8e-40 169.5 354 48.9
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 1.2e-38 164.9 358 42.2
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 3.2e-36 156.8 349 49.0
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 4.6e-35 152.9 203 51.7
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 6.2e-32 142.5 170 65.9
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 4.5e-30 136.3 110 62.7
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 7.6e-30 135.6 163 53.4
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 2.2e-29 134.0 110 63.6
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 3.2e-28 130.2 154 56.5
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 2.3e-26 124.0 101 72.3
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 1.1e-25 121.7 99 71.7
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 5.5e-20 102.8 109 60.6
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 6.7e-18 95.9 121 62.0
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 6.7e-18 95.9 75 70.7
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 3.7e-16 90.1 85 61.2
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 5.3e-15 86.3 114 72.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 2.9e-13 80.5 64 68.8
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 7.9e-11 72.4 100 47.0
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 1.0e-10 72.0 67 71.6
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 6.7e-10 69.3 45 75.6
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 8.8e-10 68.9 61 55.7
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.5e-09 68.2 64 51.6
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 2.5e-09 67.4 65 66.2
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 8.2e-08 62.4 52 67.3
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 3.1e-07 60.5 50 72.0
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.5e-06 58.2 39 66.7


User provided reference genes

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