Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 2.4e-231 805.1 386 100.0
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.5e-228 795.8 384 98.7
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.9e-228 795.4 384 98.7
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.9e-228 795.4 384 98.4
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.9e-228 795.4 386 98.2
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 1.9e-228 795.4 384 98.2
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 5.6e-228 793.9 384 98.2
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 2.1e-227 792.0 384 97.9
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 3.6e-227 791.2 384 97.9
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 4.7e-227 790.8 384 97.4
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 4.7e-227 790.8 384 97.7
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.7e-227 790.8 386 97.2
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 6.2e-227 790.4 384 97.7
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 8.0e-227 790.0 386 97.4
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 1.4e-226 789.3 384 97.7
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.8e-226 788.9 384 97.7
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.8e-226 788.9 384 97.7
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 2.3e-226 788.5 384 97.7
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 3.1e-226 788.1 384 97.4
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 3.1e-226 788.1 384 97.4
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 3.1e-226 788.1 384 97.7
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 4.0e-226 787.7 385 96.1
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 5.2e-226 787.3 384 97.1
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 5.2e-226 787.3 384 97.7
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 8.9e-226 786.6 384 97.1
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 1.5e-225 785.8 384 97.1
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 2.6e-225 785.0 384 96.6
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 3.4e-225 784.6 384 96.9
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 3.4e-225 784.6 384 96.6
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 3.4e-225 784.6 384 97.1
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 4.4e-225 784.3 384 96.6
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 5.8e-225 783.9 384 96.4
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 7.5e-225 783.5 384 96.6
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 7.5e-225 783.5 384 96.6
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 9.8e-225 783.1 386 96.4
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 9.8e-225 783.1 384 96.6
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 9.8e-225 783.1 384 96.4
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 9.8e-225 783.1 381 97.4
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 1.7e-224 782.3 386 95.9
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.7e-224 782.3 386 95.9
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 1.7e-224 782.3 384 96.9
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 2.2e-224 781.9 384 96.6
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 2.9e-224 781.6 384 96.9
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 2.9e-224 781.6 381 97.1
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 3.7e-224 781.2 384 96.6
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 8.3e-224 780.0 384 95.6
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 8.3e-224 780.0 386 95.3
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 1.1e-223 779.6 381 96.1
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 2.4e-223 778.5 386 95.3
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 3.2e-223 778.1 384 95.8
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 3.2e-223 778.1 384 95.8
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 3.2e-223 778.1 381 96.9
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 3.2e-223 778.1 384 96.1
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 5.4e-223 777.3 381 96.6
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 7.0e-223 776.9 384 95.3
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 7.0e-223 776.9 386 95.6
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 7.0e-223 776.9 384 96.1
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 9.2e-223 776.5 381 95.8
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 9.2e-223 776.5 381 95.8
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 9.2e-223 776.5 381 95.8
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 9.2e-223 776.5 383 95.3
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 9.2e-223 776.5 381 95.3
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 9.2e-223 776.5 384 95.1
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 1.6e-222 775.8 381 95.5
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.0e-222 775.4 386 94.6
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 2.7e-222 775.0 381 95.0
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 2.7e-222 775.0 386 95.1
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 3.5e-222 774.6 386 95.1
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 3.5e-222 774.6 384 95.6
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 4.6e-222 774.2 385 95.1
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 4.6e-222 774.2 381 95.5
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 4.6e-222 774.2 386 95.1
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 7.8e-222 773.5 386 94.6
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 7.8e-222 773.5 384 95.3
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.0e-221 773.1 384 95.1
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.0e-221 773.1 386 95.3
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 1.0e-221 773.1 381 96.1
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.3e-221 772.7 385 95.1
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 1.3e-221 772.7 384 94.5
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 1.3e-221 772.7 384 94.5
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 1.3e-221 772.7 384 94.5
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 1.3e-221 772.7 386 94.6
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 1.7e-221 772.3 384 94.5
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.7e-221 772.3 386 94.3
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 1.7e-221 772.3 384 95.3
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 2.3e-221 771.9 384 94.5
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 2.3e-221 771.9 384 94.5
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 2.3e-221 771.9 384 94.5
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 2.3e-221 771.9 384 94.5
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 2.3e-221 771.9 384 94.5
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 2.3e-221 771.9 384 94.3
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 2.3e-221 771.9 384 94.5
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 3.0e-221 771.5 384 94.3
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 3.0e-221 771.5 384 95.6
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 3.0e-221 771.5 379 95.5
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 3.9e-221 771.2 384 94.3
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 3.9e-221 771.2 386 94.0
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 3.9e-221 771.2 384 94.3
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 5.0e-221 770.8 384 94.3
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 6.6e-221 770.4 386 94.0
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 6.6e-221 770.4 384 95.3
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 8.6e-221 770.0 384 94.3
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 8.6e-221 770.0 384 94.5
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 8.6e-221 770.0 377 96.3
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 1.1e-220 769.6 384 94.0
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 1.1e-220 769.6 386 93.5
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 1.1e-220 769.6 378 95.8
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 1.5e-220 769.2 386 94.0
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 1.5e-220 769.2 386 94.0
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 2.5e-220 768.5 381 94.8
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 3.3e-220 768.1 384 94.5
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 2.8e-219 765.0 378 95.8
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 1.2e-217 759.6 384 93.5
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 4.1e-215 751.1 382 91.6
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 7.1e-215 750.4 384 92.4
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 9.2e-215 750.0 385 92.5
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 3.5e-214 748.0 385 92.2
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 2.3e-213 745.3 386 91.5
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 1.9e-212 742.3 358 96.6
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 1.6e-211 739.2 380 90.5
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 1.4e-210 736.1 385 89.9
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 5.2e-210 734.2 379 90.0
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 1.7e-200 702.6 378 86.2
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 5.1e-197 691.0 371 85.2
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 8.1e-195 683.7 384 83.3
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 6.9e-194 680.6 346 93.6
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 6.9e-194 680.6 378 83.1
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 1.0e-189 666.8 385 84.2
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.8e-181 639.4 384 81.2
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 4.3e-180 634.8 317 94.6
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 2.6e-177 625.5 301 98.0
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 2.5e-172 609.0 372 75.3
Actinidia08082 Actinidia chinensis HOM05D003867 ORTHO05D004593 2.5e-167 592.4 291 96.2
SGA_v2.0_scaffold1484G53963 Striga asiatica HOM05D003867 ORTHO05D004593 5.9e-153 544.7 267 95.1
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.9e-151 539.7 279 91.4
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 8.2e-139 497.7 384 67.4
unitig_744.g24299 Utricularia gibba HOM05D003867 ORTHO05D004593 7.5e-132 474.6 230 96.5
FAN12G0392 Fragaria x ananassa HOM05D003867 ORTHO05D004593 4.5e-129 465.3 384 64.3
FAN22G0799 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.7e-128 463.4 384 64.1
FAN07G1251 Fragaria x ananassa HOM05D003867 ORTHO05D004593 3.8e-128 462.2 384 64.1
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 7.2e-127 458.0 293 73.0
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.1e-119 434.1 309 72.2
TAR629G2520 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.5e-100 370.5 180 97.8
Aqoxy3G01811 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.9e-98 363.6 180 92.2
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 3.2e-98 362.8 220 80.5
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.6e-94 350.5 174 96.0
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.5e-92 344.0 170 94.7
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 3.1e-77 293.1 146 93.2
Lj6P823T18 Lonicera japonica HOM05D003867 ORTHO05D004593 2.0e-68 263.8 146 86.3
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 1.4e-66 257.7 129 96.1
MD16G1114900 Malus domestica HOM05D003867 ORTHO05D004593 1.9e-63 247.3 127 88.2
Aqoxy84s003 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.4e-53 214.5 253 45.5
Nn8g40622 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.0e-51 208.4 102 95.1
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 3.2e-42 176.8 386 33.9
MD16G1114800 Malus domestica HOM05D003867 ORTHO05D004593 3.1e-37 160.2 77 97.4
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 7.7e-36 155.6 102 75.5
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 8.5e-35 152.1 76 94.7
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 8.5e-35 152.1 76 94.7
Duzib128G1406 Durio zibethinus HOM05D003867 ORTHO05D004593 1.8e-29 134.4 197 38.6
HPP92_000984 Vanilla planifolia HOM05D003867 ORTHO05D004593 7.0e-29 132.5 61 100.0
BcaC03g13232 Brassica carinata HOM05D003867 ORTHO05D004593 1.2e-28 131.7 68 94.1
FAN03G1235 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.6e-28 130.6 70 88.6
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.9e-27 127.1 65 93.8
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 2.9e-27 127.1 65 93.8
FAN15G0422 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.1e-26 125.2 67 88.1
FAN07G1961 Fragaria x ananassa HOM05D003867 ORTHO05D004593 6.1e-25 119.4 65 86.2
FAN08G0425 Fragaria x ananassa HOM05D003867 ORTHO05D004593 1.4e-24 118.2 65 84.6
Pp3c3_8640 Physcomitrium patens HOM05D003867 ORTHO05D004593 4.8e-22 109.8 65 80.0
Atru.chr11.2285 Acer truncatum HOM05D003867 ORTHO05D004593 1.6e-20 104.8 65 73.8
GSVIVG01020401001 Vitis vinifera HOM05D003867 ORTHO05D004593 3.2e-18 97.1 45 100.0
Pp3c13_10840 Physcomitrium patens HOM05D003867 ORTHO05D004593 9.4e-18 95.5 48 91.7
FvH4_1g23805 Fragaria vesca HOM05D000280 ORTHO05D000632 3.1e-13 80.5 71 57.7
FvH4_3g23161 Fragaria vesca HOM05D011771 ORTHO05D014214 9.1e-13 79.0 72 56.9
FvH4_3g31747 Fragaria vesca HOM05D011771 ORTHO05D014214 2.0e-12 77.8 72 56.9
FvH4_7g28392 Fragaria vesca HOM05D003867 ORTHO05D196806 1.2e-09 68.6 61 59.0
Duzib052G0593 Durio zibethinus HOM05D000222 ORTHO05D001350 1.7e-06 58.2 40 67.5


User provided reference genes

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