Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 1.2e-68 263.1 136 100.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 2.1e-33 146.0 98 80.6
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 9.0e-32 140.6 95 75.8
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 9.3e-29 130.6 114 64.9
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 3.5e-28 128.6 108 66.7
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 9.7e-26 120.6 92 66.3
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.1e-24 115.5 114 57.9
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 2.6e-23 112.5 97 60.8
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 7.6e-23 110.9 97 59.8
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.0e-22 110.5 83 69.9
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 1.0e-22 110.5 95 65.3
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-22 110.2 104 60.6
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.3e-22 110.2 114 57.0
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.3e-22 110.2 97 58.8
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.3e-22 110.2 111 63.1
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.2e-22 109.4 94 60.6
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 6.5e-22 107.8 97 57.7
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 8.5e-22 107.5 93 60.2
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.4e-21 106.7 105 61.0
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 2.5e-21 105.9 97 64.9
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 7.2e-21 104.4 113 54.0
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 9.4e-21 104.0 92 59.8
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 2.1e-20 102.8 93 57.0
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 2.7e-20 102.4 104 55.8
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.6e-20 102.1 99 58.6
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.6e-20 101.7 105 58.1
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.8e-19 99.8 88 61.4
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 2.3e-19 99.4 102 55.9
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 3.0e-19 99.0 97 57.7
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 3.0e-19 99.0 93 55.9
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.9e-19 98.6 98 60.2
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 6.7e-19 97.8 97 55.7
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 8.8e-19 97.4 92 57.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.1e-18 97.1 114 51.8
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.9e-18 96.3 90 58.9
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.9e-18 96.3 114 53.5
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 2.5e-18 95.9 95 57.9
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 3.3e-18 95.5 92 55.4
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.7e-18 94.7 99 58.6
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 5.7e-18 94.7 99 57.6
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-17 93.2 88 61.4
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-17 93.2 95 58.9
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 2.2e-17 92.8 94 54.3
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.2e-17 92.8 114 52.6
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.8e-17 92.4 112 52.7
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.7e-17 92.0 97 54.6
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 4.8e-17 91.7 92 57.6
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 6.3e-17 91.3 101 56.4
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-16 90.5 95 57.9
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.8e-16 89.7 97 53.6
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.4e-16 89.4 96 54.2
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.4e-16 89.4 94 56.4
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 2.0e-15 86.3 93 54.8
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 2.0e-15 86.3 104 52.9
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.0e-15 86.3 97 52.6
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 2.6e-15 85.9 97 54.6
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 3.4e-15 85.5 96 55.2
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 7.7e-15 84.3 84 57.1
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.0e-14 84.0 94 53.2
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.2e-14 82.8 104 51.0
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 8.5e-14 80.9 92 50.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 3.2e-13 79.0 101 47.5
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 4.2e-13 78.6 99 51.5
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 5.5e-13 78.2 94 50.0
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 7.2e-13 77.8 103 49.5
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.4e-13 77.4 93 49.5
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 2.7e-12 75.9 93 48.4
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.7e-12 75.9 93 48.4
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.7e-12 75.9 93 48.4
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 4.7e-12 75.1 94 45.7
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 6.1e-12 74.7 95 50.5
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 6.1e-12 74.7 93 48.4
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 6.1e-12 74.7 97 45.4
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.4e-11 73.6 111 45.9
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.8e-11 73.2 94 50.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.8e-11 73.2 98 50.0
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.3e-11 72.8 92 45.7
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 3.0e-11 72.4 110 44.5
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 3.0e-11 72.4 94 50.0
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.0e-11 72.4 100 45.0
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 6.7e-11 71.2 112 42.9
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 1.1e-10 70.5 85 49.4
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.6e-10 69.3 90 50.0
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.7e-10 68.2 90 51.1
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 7.4e-10 67.8 99 42.4
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 9.7e-10 67.4 73 53.4
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.3e-09 67.0 97 43.3
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.3e-09 67.0 107 43.9
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 1.3e-09 67.0 70 51.4
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-09 66.6 81 53.1
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.8e-09 65.9 41 75.6
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.8e-09 65.9 81 51.9
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.7e-09 65.5 84 50.0
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 6.3e-09 64.7 84 51.2
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 8.2e-09 64.3 95 43.2
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 1.4e-08 63.5 78 48.7
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.8e-08 63.2 98 41.8
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.8e-08 63.2 83 47.0
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.4e-08 62.8 67 53.7
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.4e-08 62.8 78 52.6
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 4.1e-08 62.0 71 52.1
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 4.1e-08 62.0 71 52.1
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 4.1e-08 62.0 71 52.1
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 5.3e-08 61.6 87 41.4
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 5.3e-08 61.6 66 48.5
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 7.0e-08 61.2 95 45.3
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 7.0e-08 61.2 95 45.3
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 7.0e-08 61.2 86 43.0
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.0e-08 61.2 46 63.0
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 9.1e-08 60.8 88 43.2
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 9.1e-08 60.8 95 46.3
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 9.1e-08 60.8 71 49.3
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-07 60.5 67 50.7
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.2e-07 60.5 67 50.7
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-07 60.1 95 44.2
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.0e-07 59.7 102 46.1
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.0e-07 59.7 67 53.7
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 2.0e-07 59.7 45 71.1
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 2.6e-07 59.3 103 45.6
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.4e-07 58.9 66 48.5
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 3.4e-07 58.9 47 59.6
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 3.4e-07 58.9 93 44.1
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.5e-07 58.5 104 41.3
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 7.7e-07 57.8 100 44.0
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 7.7e-07 57.8 100 43.0
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.0e-06 57.4 91 46.2
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-06 57.4 69 49.3
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-06 57.4 96 44.8
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-06 57.4 93 43.0
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.0e-06 57.4 90 41.1
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.0e-06 57.4 93 41.9
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.0e-06 57.4 93 43.0
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.0e-06 57.4 93 43.0
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.0e-06 57.4 93 41.9
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.0e-06 57.4 94 44.7
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 1.7e-06 56.6 67 52.2
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.7e-06 56.6 99 43.4
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 1.7e-06 56.6 62 48.4
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 1.7e-06 56.6 102 44.1
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.2e-06 56.2 96 42.7
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.2e-06 56.2 84 46.4
Lsat_1_v5_gn_3_5041 Lactuca sativa HOM05D003683 ORTHO05D004143 2.9e-06 55.8 77 46.8
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 3.8e-06 55.5 95 42.1
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 5.0e-06 55.1 92 39.1
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 5.0e-06 55.1 100 42.0
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 5.0e-06 55.1 97 39.2
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 5.0e-06 55.1 102 39.2
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 6.5e-06 54.7 97 38.1


User provided reference genes

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