Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 4.4e-161 571.2 289 100.0
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 1.7e-128 463.0 273 85.0
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 3.2e-127 458.8 274 83.9
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.2e-126 456.8 271 81.5
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 7.8e-126 454.1 271 82.3
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 3.0e-125 452.2 259 86.1
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 1.9e-124 449.5 267 82.0
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 3.6e-123 445.3 264 82.2
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 3.6e-123 445.3 264 82.2
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 6.2e-123 444.5 268 81.3
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 3.1e-122 442.2 267 80.5
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 5.3e-122 441.4 267 80.9
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 5.3e-122 441.4 267 83.9
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.2e-121 440.3 267 82.4
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 3.4e-121 438.7 267 81.3
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 9.9e-121 437.2 267 80.9
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.2e-120 436.0 267 82.0
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 2.9e-120 435.6 266 81.2
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 1.1e-119 433.7 268 79.5
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.4e-119 433.3 266 80.8
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 9.3e-119 430.6 267 78.7
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 3.5e-118 428.7 266 77.4
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 4.6e-118 428.3 269 79.2
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 7.8e-118 427.6 263 79.5
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 3.9e-117 425.2 267 78.3
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 6.6e-117 424.5 268 76.9
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 6.6e-117 424.5 265 77.4
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 8.7e-117 424.1 266 78.6
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 2.5e-116 422.5 319 70.8
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 3.3e-116 422.2 267 78.7
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 7.3e-116 421.0 267 77.5
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 9.6e-116 420.6 266 78.9
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 1.3e-115 420.2 267 77.5
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.6e-115 419.9 237 87.3
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.6e-115 419.9 266 78.6
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.6e-115 419.9 267 76.8
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 2.1e-115 419.5 267 77.2
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 2.8e-115 419.1 266 77.8
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 3.6e-115 418.7 291 74.9
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 8.1e-115 417.5 267 77.9
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 8.1e-115 417.5 265 78.1
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 1.8e-114 416.4 266 78.2
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 1.8e-114 416.4 268 76.5
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 2.4e-114 416.0 266 74.4
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 2.4e-114 416.0 265 75.5
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 4.0e-114 415.2 265 76.6
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 5.3e-114 414.8 275 74.2
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 6.9e-114 414.5 269 77.7
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 1.2e-113 413.7 267 75.7
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.5e-113 413.3 267 76.0
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.6e-113 412.5 267 77.2
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 2.6e-113 412.5 283 72.8
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 3.4e-113 412.1 268 76.1
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 4.5e-113 411.8 268 75.7
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 4.5e-113 411.8 266 76.7
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 9.9e-113 410.6 267 76.0
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 1.3e-112 410.2 269 75.8
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 2.2e-112 409.5 266 76.7
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 1.4e-111 406.8 269 74.0
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 4.2e-111 405.2 273 72.2
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 7.1e-111 404.4 268 75.4
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 7.1e-111 404.4 268 75.4
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 9.3e-111 404.1 267 74.9
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.6e-110 403.3 290 70.3
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 2.7e-110 402.5 266 75.2
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 4.6e-110 401.7 262 74.0
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 4.6e-110 401.7 267 72.7
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 7.9e-110 401.0 266 74.8
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 7.9e-110 401.0 290 70.3
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 7.9e-110 401.0 232 86.2
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 1.3e-109 400.2 265 72.8
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 1.3e-109 400.2 267 72.7
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 3.0e-109 399.1 264 73.9
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 3.0e-109 399.1 275 72.0
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 6.7e-109 397.9 231 85.3
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 3.3e-108 395.6 270 73.3
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 5.6e-108 394.8 317 64.7
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 1.3e-107 393.7 242 81.0
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 2.8e-107 392.5 279 68.5
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.1e-106 390.6 267 73.0
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 2.4e-106 389.4 270 71.1
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 2.4e-106 389.4 270 71.1
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 2.4e-106 389.4 317 64.4
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 3.1e-106 389.0 271 70.8
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 6.9e-106 387.9 267 72.3
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 9.0e-106 387.5 231 81.4
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 2.6e-105 386.0 267 69.7
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 6.4e-104 381.3 270 68.9
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 9.3e-103 377.5 270 68.9
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 1.6e-102 376.7 231 79.7
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 1.3e-101 373.6 269 68.4
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 3.0e-101 372.5 276 68.5
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 4.3e-100 368.6 268 71.3
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.4e-98 363.6 371 54.4
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 1.1e-92 344.0 268 63.4
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 7.4e-92 341.3 261 65.5
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 7.4e-92 341.3 262 65.6
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-88 328.9 233 71.7
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 1.9e-87 326.6 260 61.5
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 3.2e-87 325.9 194 82.0
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 6.1e-86 321.6 232 69.8
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 3.9e-85 318.9 263 60.5
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 5.1e-85 318.5 206 80.1
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 2.7e-78 296.2 190 74.7
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 1.1e-76 290.8 193 75.6
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 2.0e-76 290.0 197 70.1
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 2.2e-72 276.6 184 71.7
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 4.7e-70 268.9 198 69.2
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 3.7e-67 259.2 169 74.6
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 4.1e-66 255.8 159 77.4
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 3.6e-62 242.7 157 74.5
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 8.0e-62 241.5 162 75.3
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.8e-61 240.4 199 60.8
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 2.4e-58 229.9 130 86.9
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 2.3e-53 213.4 171 66.7
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 2.6e-52 209.9 171 65.5
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 9.8e-52 208.0 133 73.7
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.8e-48 196.1 157 65.6
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-47 194.1 156 66.0
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-47 194.1 160 64.4
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-47 194.1 228 50.9
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-47 193.4 157 65.0
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 7.2e-47 191.8 173 60.7
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 7.2e-47 191.8 160 65.0
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-46 189.5 157 64.3
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.3e-45 186.8 156 64.1
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 2.0e-44 183.7 158 62.0
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 1.0e-40 171.4 108 78.7
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-40 169.9 144 63.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 7.3e-39 165.2 157 59.2
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.8e-37 160.6 104 73.1
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 2.6e-36 156.8 177 54.8
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 7.5e-36 155.2 160 55.6
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 7.5e-36 155.2 160 55.6
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 9.8e-36 154.8 105 70.5
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-35 152.1 94 80.9
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-34 151.0 107 72.9
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-34 151.0 123 65.9
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 1.9e-34 150.6 122 65.6
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.1e-31 141.4 228 40.8
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 3.3e-31 139.8 88 75.0
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-26 124.8 112 59.8
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 1.4e-26 124.4 82 75.6
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.2e-25 121.3 139 53.2
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 4.7e-22 109.4 133 48.1
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.1e-21 108.2 70 78.6
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.9e-18 97.4 57 82.5
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 7.1e-18 95.5 104 51.0
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 2.1e-17 94.0 89 59.6
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 4.6e-17 92.8 55 76.4
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 2.9e-11 73.6 115 40.9
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 7.1e-10 68.9 111 39.6
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 2.5e-07 60.5 34 73.5
Duzib205G0541 Durio zibethinus HOM05D004703 ORTHO05D005801 5.6e-07 59.3 149 34.2
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 2.8e-06 57.0 43 62.8
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 6.2e-06 55.8 36 69.4
arahy.Tifrunner.gnm1.ann1.CXRB51 Arachis hypogaea HOM05D004703 ORTHO05D015979 8.1e-06 55.5 35 71.4


User provided reference genes

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