Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 1.4e-207 726.1 374 100.0
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 1.3e-144 516.9 374 74.3
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.2e-141 506.1 379 73.1
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 1.8e-138 496.5 375 70.7
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 6.3e-136 488.0 376 69.7
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 6.3e-136 488.0 375 71.5
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 1.6e-131 473.4 380 68.7
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.8e-130 469.9 384 69.0
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 2.3e-130 469.5 372 70.7
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.2e-129 467.2 375 67.7
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 1.2e-129 467.2 398 64.6
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 3.4e-129 465.7 384 68.0
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 3.7e-128 462.2 370 68.9
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 3.1e-127 459.1 376 67.3
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 3.1e-127 459.1 412 63.1
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 1.2e-126 457.2 370 67.3
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 2.0e-126 456.4 375 66.1
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 5.9e-126 454.9 370 67.6
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 5.9e-126 454.9 375 65.9
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 6.1e-123 444.9 376 66.0
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 3.0e-122 442.6 378 65.9
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 8.9e-122 441.0 380 65.5
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 1.2e-121 440.7 372 64.8
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 1.5e-121 440.3 369 66.7
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 2.0e-121 439.9 379 65.7
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 9.8e-121 437.6 372 64.5
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 2.2e-120 436.4 376 64.4
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 2.9e-120 436.0 370 64.1
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 3.7e-120 435.6 370 64.3
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 1.2e-118 430.6 374 64.7
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 1.2e-118 430.6 418 58.9
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 2.0e-118 429.9 369 64.2
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 4.6e-118 428.7 380 63.2
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 1.7e-117 426.8 417 58.3
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 3.0e-117 426.0 377 63.9
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 3.0e-117 426.0 413 60.8
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 5.0e-117 425.2 371 65.0
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 8.6e-117 424.5 371 64.7
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 1.5e-116 423.7 371 64.7
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 2.5e-116 422.9 380 63.4
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 2.5e-116 422.9 375 61.3
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 7.3e-116 421.4 375 60.0
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 2.8e-115 419.5 375 63.2
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 3.6e-115 419.1 380 62.4
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 6.2e-115 418.3 380 61.1
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 6.2e-115 418.3 369 62.3
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 8.0e-115 417.9 375 63.5
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.1e-114 417.5 371 65.0
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 1.4e-114 417.2 371 60.1
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 3.1e-114 416.0 378 64.8
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 5.2e-114 415.2 370 61.6
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 5.2e-114 415.2 385 61.6
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 1.5e-113 413.7 372 63.7
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 2.0e-113 413.3 375 61.3
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 3.4e-113 412.5 378 60.8
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 7.5e-113 411.4 372 62.9
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 9.8e-113 411.0 372 62.9
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 1.3e-112 410.6 375 61.1
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.7e-112 410.2 372 62.4
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.2e-112 409.8 371 62.8
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.7e-112 409.1 371 63.6
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.1e-111 407.5 381 60.6
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 7.0e-111 404.8 362 62.7
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 1.2e-110 404.1 375 61.9
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.6e-110 403.7 375 60.3
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 2.1e-110 403.3 373 60.3
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.5e-110 402.5 376 61.2
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 1.3e-109 400.6 378 59.5
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 2.5e-108 396.4 375 58.7
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 1.6e-107 393.7 373 59.2
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 2.1e-107 393.3 375 60.8
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 6.2e-107 391.7 377 60.5
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 7.5e-105 384.8 401 58.4
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 9.9e-105 384.4 375 57.6
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 2.9e-104 382.9 391 57.0
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 3.2e-103 379.4 390 56.4
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 2.1e-102 376.7 375 57.1
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.6e-102 375.6 371 59.0
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 1.0e-101 374.4 379 57.3
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.3e-100 369.4 370 59.7
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 4.7e-99 365.5 366 57.7
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 9.9e-97 357.8 393 52.7
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 1.3e-96 357.5 392 53.8
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 6.4e-96 355.1 389 53.5
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 8.4e-96 354.8 401 51.1
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 8.4e-96 354.8 397 54.2
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 8.4e-96 354.8 397 51.6
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 8.4e-96 354.8 393 52.9
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 2.7e-94 349.7 399 54.1
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 4.6e-94 349.0 403 52.1
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 7.8e-94 348.2 397 52.1
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 1.3e-93 347.4 408 52.5
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 3.0e-93 346.3 358 57.0
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 6.6e-93 345.1 400 53.2
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 7.3e-92 341.7 402 51.7
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 1.2e-91 340.9 396 52.8
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 1.6e-91 340.5 407 52.3
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 2.1e-91 340.1 413 51.6
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 2.1e-91 340.1 316 60.4
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 3.6e-91 339.3 399 51.4
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 4.7e-91 339.0 414 51.7
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 1.8e-90 337.0 415 50.1
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 6.9e-90 335.1 417 50.8
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 6.9e-90 335.1 373 53.9
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.2e-89 334.3 375 53.3
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 1.5e-89 334.0 407 52.3
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 1.7e-88 330.5 409 52.3
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 2.2e-88 330.1 422 50.7
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 3.2e-87 326.2 411 51.6
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 7.1e-87 325.1 430 45.8
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 2.2e-80 303.5 329 55.3
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 1.5e-73 280.8 289 55.4
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 5.3e-58 229.2 194 65.5
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 5.3e-58 229.2 194 65.5
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 5.3e-58 229.2 194 65.5
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 1.2e-57 228.0 406 39.4
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 3.2e-55 219.9 366 40.2
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 4.1e-50 203.0 487 33.7
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 1.5e-49 201.1 298 46.3
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 8.5e-48 195.3 279 45.9
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.0e-45 188.3 143 68.5
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 5.1e-45 186.0 536 31.3
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.6e-44 183.7 374 41.7
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 8.0e-38 162.2 397 33.2
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 3.9e-37 159.8 144 62.5
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 2.4e-34 150.6 169 52.1
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 4.1e-34 149.8 145 58.6
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 6.1e-30 136.0 199 44.7
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 1.3e-24 118.2 314 30.9
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 4.0e-21 106.7 107 57.9
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 5.7e-20 102.8 183 36.1
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 1.3e-19 101.7 377 27.6
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 1.3e-19 101.7 377 27.6
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 4.4e-12 76.6 45 80.0
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 3.2e-10 70.5 114 42.1
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 5.6e-07 59.7 79 40.5
MCO11G547 Micromonas commoda HOM05D005438 ORTHO05D006744 4.7e-06 56.6 326 25.8


User provided reference genes

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