Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 4.3e-87 324.7 174 100.0
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 4.4e-47 191.8 149 72.5
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 3.7e-46 188.7 149 71.1
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 4.8e-46 188.3 164 68.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 4.1e-45 185.3 174 69.5
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 4.5e-44 181.8 146 67.8
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 8.5e-43 177.6 162 58.0
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.5e-42 176.8 162 64.8
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 1.9e-42 176.4 160 65.0
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 1.2e-41 173.7 162 62.3
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 8.0e-41 171.0 164 62.2
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 2.3e-40 169.5 150 67.3
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.7e-38 163.3 162 61.1
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 1.7e-38 163.3 162 59.3
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 3.7e-38 162.2 144 65.3
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 4.8e-38 161.8 140 64.3
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 4.8e-38 161.8 174 57.5
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 6.3e-38 161.4 174 59.2
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 4.1e-37 158.7 157 59.2
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 4.1e-37 158.7 166 56.6
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 5.3e-37 158.3 163 58.9
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.3e-37 158.3 157 59.2
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.3e-37 158.3 157 59.2
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.0e-36 156.4 156 56.4
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.0e-36 156.4 156 56.4
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 2.7e-36 156.0 172 57.6
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 3.5e-36 155.6 157 58.6
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 5.9e-36 154.8 171 57.9
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 1.0e-35 154.1 158 53.8
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 1.0e-35 154.1 158 53.8
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 2.2e-35 152.9 147 59.9
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 2.9e-35 152.5 168 56.5
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 6.5e-35 151.4 162 58.0
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 8.5e-35 151.0 145 61.4
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.1e-34 150.6 168 56.5
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.1e-34 150.6 168 56.5
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.1e-34 150.6 186 50.5
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 1.1e-34 150.6 167 58.7
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 2.5e-34 149.4 154 63.0
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 3.2e-34 149.1 139 61.2
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 5.5e-34 148.3 160 59.4
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 7.2e-34 147.9 178 57.3
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.2e-33 147.1 159 59.1
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 2.7e-33 146.0 165 57.6
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.7e-33 145.2 177 55.4
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.7e-33 145.2 177 55.4
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 4.7e-33 145.2 182 54.4
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 8.0e-33 144.4 167 56.9
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 8.0e-33 144.4 167 56.3
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.0e-32 144.1 172 57.0
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 1.8e-32 143.3 171 56.7
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 2.3e-32 142.9 169 59.2
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 3.0e-32 142.5 147 56.5
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 4.0e-32 142.1 171 53.2
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 5.2e-32 141.7 148 54.7
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 1.2e-31 140.6 158 55.7
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 2.0e-31 139.8 161 52.2
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.6e-31 139.4 160 58.1
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.4e-31 138.7 158 57.6
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 4.4e-31 138.7 180 53.9
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 4.4e-31 138.7 169 52.7
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 7.5e-31 137.9 177 55.4
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 1.3e-30 137.1 158 56.3
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 2.8e-30 136.0 154 55.8
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 3.7e-30 135.6 168 51.2
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 4.8e-30 135.2 158 55.7
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 6.3e-30 134.8 107 77.6
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 3.1e-29 132.5 180 52.2
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 4.1e-29 132.1 165 52.1
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 9.1e-29 131.0 155 52.9
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 1.2e-28 130.6 164 55.5
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 1.6e-28 130.2 152 53.3
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.6e-28 130.2 187 50.8
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.7e-28 129.4 155 52.3
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 4.5e-28 128.6 177 52.5
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 5.9e-28 128.3 144 60.4
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 1.3e-27 127.1 171 52.0
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 2.3e-27 126.3 176 47.7
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 3.8e-27 125.6 174 48.9
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 6.5e-27 124.8 174 50.0
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 8.6e-27 124.4 174 49.4
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 1.1e-26 124.0 185 45.4
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 1.1e-26 124.0 185 45.4
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 1.9e-26 123.2 177 49.7
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 1.9e-26 123.2 157 54.8
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 2.5e-26 122.9 178 51.7
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 3.3e-26 122.5 176 48.3
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 3.3e-26 122.5 182 51.1
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 4.2e-26 122.1 157 53.5
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 4.2e-26 122.1 167 51.5
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 5.5e-26 121.7 146 55.5
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 7.2e-26 121.3 174 47.7
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 7.2e-26 121.3 185 45.9
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 1.2e-25 120.6 176 52.3
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.2e-25 120.6 179 48.6
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 2.1e-25 119.8 161 49.7
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 2.8e-25 119.4 146 56.8
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 3.6e-25 119.0 167 49.7
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 8.0e-25 117.9 168 47.6
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 8.0e-25 117.9 164 48.2
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 5.2e-24 115.2 187 46.5
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 6.8e-24 114.8 155 46.5
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 1.2e-23 114.0 151 48.3
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 1.2e-23 114.0 138 55.8
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 2.6e-23 112.8 178 47.2
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 4.4e-23 112.1 173 46.2
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 5.7e-23 111.7 151 47.7
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.2e-22 109.8 158 45.6
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 3.7e-22 109.0 154 46.1
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.1e-21 107.5 169 45.0
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.1e-21 107.5 169 45.0
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.4e-21 107.1 156 48.1
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.4e-21 107.1 166 44.0
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 3.1e-21 105.9 165 46.1
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 9.2e-21 104.4 162 47.5
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 7.8e-20 101.3 164 42.1
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 2.3e-19 99.8 156 45.5
Rhsim02G0241700 Rhododendron simsii HOM05D000089 ORTHO05D003403 2.9e-19 99.4 215 40.5
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.5e-18 97.1 154 45.5
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 9.5e-18 94.4 138 50.0
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.5e-18 94.4 96 60.4
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.5e-18 94.4 96 60.4
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 9.5e-18 94.4 96 60.4
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 1.2e-17 94.0 173 42.8
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 1.8e-16 90.1 143 43.4
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 7.5e-15 84.7 116 50.0
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 1.7e-14 83.6 85 52.9
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 1.7e-14 83.6 166 42.2
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 3.7e-14 82.4 115 53.0
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 3.7e-14 82.4 115 53.0
CSS0044305 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 4.9e-14 82.0 81 65.4
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 1.4e-13 80.5 62 66.1
Gohir.D03G082400 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.4e-13 78.6 105 48.6
Gorai.003G081300 Gossypium raimondii HOM05D005006 ORTHO05D005903 5.4e-13 78.6 105 48.6
ATR0589G111 Amborella trichopoda HOM05D005006 ORTHO05D005903 7.0e-13 78.2 163 38.7
Gohir.A02G102000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 9.2e-13 77.8 116 45.7
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.2e-12 77.4 115 44.3
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.1e-10 70.9 87 50.6
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 3.3e-10 69.3 87 52.9
CSS0044713 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 1.2e-09 67.4 142 41.5
PSO729G0067 Papaver somniferum HOM05D005006 ORTHO05D005903 1.2e-09 67.4 125 48.8
SGA_v2.0_scaffold173G39083 Striga asiatica HOM05D005006 ORTHO05D005903 1.2e-09 67.4 49 69.4
EL10Ac5g12894 Beta vulgaris HOM05D005006 ORTHO05D005903 1.6e-09 67.0 117 41.0
SalBow1G2562 Salvia bowleyana HOM05D005006 ORTHO05D005903 6.2e-09 65.1 109 43.1
SalBow1G1740 Salvia bowleyana HOM05D005006 ORTHO05D005903 8.0e-09 64.7 109 43.1
PSO724G0350 Papaver somniferum HOM05D005006 ORTHO05D005903 1.8e-08 63.5 134 38.8
CSS0015607 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.2e-08 62.0 143 36.4
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 6.8e-08 61.6 155 34.2
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 1.2e-07 60.8 113 43.4
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 1.2e-07 60.8 113 43.4
Os06g0525200 Oryza sativa ssp. japonica HOM05D005006 ORTHO05D005903 3.4e-07 59.3 158 36.1
Ah.12g052340 Amaranthus hybridus HOM05D005006 ORTHO05D005903 1.3e-06 57.4 115 38.3


User provided reference genes

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