Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.3e-38 162.5 81 100.0
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 2.6e-34 148.3 81 91.4
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 3.8e-30 134.4 81 81.5
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 8.0e-28 126.7 81 79.0
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.0e-27 126.3 81 77.8
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 3.0e-27 124.8 85 75.3
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 9.8e-26 119.8 81 75.3
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 1.7e-25 119.0 85 70.6
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 2.2e-25 118.6 81 70.4
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 1.8e-24 115.5 76 75.0
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.6e-23 112.5 77 76.6
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 1.6e-23 112.5 77 76.6
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.6e-23 110.9 85 70.6
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 7.8e-23 110.2 82 72.0
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.3e-22 108.6 81 71.6
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 3.0e-22 108.2 83 69.9
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 3.0e-22 108.2 81 70.4
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 3.9e-22 107.8 81 71.6
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 1.5e-21 105.9 76 76.3
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 2.5e-21 105.1 81 71.6
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.3e-21 104.8 81 70.4
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.3e-21 104.8 81 70.4
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 4.3e-21 104.4 85 63.5
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 5.6e-21 104.0 87 65.5
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 5.6e-21 104.0 81 67.9
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 7.3e-21 103.6 83 67.5
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 9.5e-21 103.2 80 66.2
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.2e-20 102.8 81 66.7
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 2.1e-20 102.1 82 67.1
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 2.8e-20 101.7 81 65.4
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.6e-20 101.3 81 65.4
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 3.6e-20 101.3 81 69.1
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 4.7e-20 100.9 82 70.7
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 4.7e-20 100.9 83 65.1
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 6.2e-20 100.5 81 64.2
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 6.2e-20 100.5 81 66.7
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.1e-19 99.8 78 67.9
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.1e-19 99.8 84 66.7
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 1.1e-19 99.8 84 66.7
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.4e-19 99.4 81 64.2
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 1.4e-19 99.4 82 67.1
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.8e-19 99.0 91 62.6
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 2.3e-19 98.6 81 63.0
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.3e-19 98.6 81 63.0
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 3.1e-19 98.2 86 62.8
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 4.0e-19 97.8 82 68.3
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 5.2e-19 97.4 86 59.3
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.2e-19 97.4 91 61.5
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 5.2e-19 97.4 81 63.0
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.8e-19 97.1 77 68.8
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 1.2e-18 96.3 80 58.8
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 1.2e-18 96.3 83 65.1
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.5e-18 95.9 81 65.4
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.5e-18 95.9 91 61.5
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 2.0e-18 95.5 78 65.4
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.6e-18 95.1 84 63.1
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 2.6e-18 95.1 81 63.0
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.6e-18 95.1 81 64.2
FAN13G0943 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.4e-18 94.7 80 62.5
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 4.4e-18 94.4 85 61.2
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 5.8e-18 94.0 85 65.9
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 9.8e-18 93.2 82 63.4
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 9.8e-18 93.2 81 63.0
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.7e-17 92.4 84 61.9
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.2e-17 92.0 84 61.9
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 2.2e-17 92.0 76 63.2
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.2e-17 92.0 76 67.1
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 2.2e-17 92.0 79 60.8
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 2.2e-17 92.0 81 60.5
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 2.2e-17 92.0 79 60.8
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 2.9e-17 91.7 75 62.7
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.9e-17 91.7 89 59.6
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 3.7e-17 91.3 86 59.3
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 3.7e-17 91.3 87 56.3
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 6.4e-17 90.5 76 61.8
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.1e-16 89.7 79 62.0
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 1.4e-16 89.4 76 65.8
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 1.4e-16 89.4 76 65.8
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 1.4e-16 89.4 80 65.0
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 1.4e-16 89.4 78 64.1
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 1.9e-16 89.0 78 65.4
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 2.4e-16 88.6 81 61.7
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 3.2e-16 88.2 81 60.5
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.2e-16 88.2 81 60.5
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 4.1e-16 87.8 85 58.8
FAN18G2387 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.4e-16 87.4 75 61.3
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.2e-15 86.3 78 59.0
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 1.6e-15 85.9 83 56.6
MD06G1107200 Malus domestica HOM05D004051 ORTHO05D004480 1.6e-15 85.9 76 60.5
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 1.6e-15 85.9 82 61.0
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 2.7e-15 85.1 81 59.3
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 3.5e-15 84.7 77 58.4
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 3.5e-15 84.7 81 58.0
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 7.8e-15 83.6 75 58.7
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 7.8e-15 83.6 80 57.5
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 7.8e-15 83.6 72 59.7
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 7.8e-15 83.6 90 56.7
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 7.8e-15 83.6 77 61.0
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.0e-14 83.2 80 57.5
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-14 82.8 75 58.7
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 1.3e-14 82.8 86 53.5
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.3e-14 82.8 74 62.2
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 1.3e-14 82.8 80 57.5
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 1.7e-14 82.4 86 57.0
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 1.7e-14 82.4 83 55.4
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 2.3e-14 82.0 76 57.9
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.3e-14 82.0 80 61.2
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 2.3e-14 82.0 78 57.7
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.0e-14 81.6 81 58.0
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 3.0e-14 81.6 92 52.2
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 3.0e-14 81.6 76 56.6
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 3.9e-14 81.3 75 58.7
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 3.9e-14 81.3 82 58.5
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 6.6e-14 80.5 58 69.0
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 8.6e-14 80.1 83 56.6
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.6e-14 80.1 93 53.8
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 8.6e-14 80.1 83 57.8
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.1e-13 79.7 76 56.6
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 1.1e-13 79.7 76 56.6
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.5e-13 79.3 75 57.3
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 1.5e-13 79.3 81 54.3
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.5e-13 78.6 75 56.0
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 3.3e-13 78.2 79 57.0
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.3e-13 78.2 76 55.3
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.3e-13 78.2 82 56.1
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 4.3e-13 77.8 75 56.0
Hund14219 Selenicereus undatus HOM05D004051 ORTHO05D004480 4.3e-13 77.8 74 60.8
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 5.6e-13 77.4 76 57.9
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 7.3e-13 77.0 84 56.0
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 9.5e-13 76.6 82 52.4
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 9.5e-13 76.6 75 54.7
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 9.5e-13 76.6 81 53.1
Haze_09066 Corylus avellana HOM05D004051 ORTHO05D004480 1.2e-12 76.3 61 70.5
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 1.2e-12 76.3 79 55.7
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 2.1e-12 75.5 82 54.9
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 2.1e-12 75.5 82 53.7
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.1e-12 75.5 101 45.5
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.8e-12 75.1 79 55.7
C07p53180 Brassica napus HOM05D004051 ORTHO05D004480 4.7e-12 74.3 72 55.6
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 6.2e-12 73.9 79 59.5
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 8.1e-12 73.6 82 52.4
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.1e-12 73.6 75 54.7
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 8.1e-12 73.6 71 59.2
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.4e-11 72.8 77 57.1
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 3.1e-11 71.6 77 53.2
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 4.0e-11 71.2 83 49.4
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 4.0e-11 71.2 78 51.3
Hund11389 Selenicereus undatus HOM05D004051 ORTHO05D004480 5.2e-11 70.9 78 56.4
C01p19120 Brassica napus HOM05D004051 ORTHO05D004480 8.9e-11 70.1 72 54.2
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.2e-10 69.7 92 48.9
A03p54820 Brassica napus HOM05D004051 ORTHO05D004480 2.0e-10 68.9 70 55.7
FAN13G0743 Fragaria x ananassa HOM05D004051 ORTHO05D004480 2.0e-10 68.9 72 50.0
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 2.6e-10 68.6 75 54.7
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.6e-10 68.6 81 48.1
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 3.4e-10 68.2 75 54.7
BraA03t14549Z Brassica rapa HOM05D004051 ORTHO05D004480 3.4e-10 68.2 70 52.9
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 4.4e-10 67.8 78 51.3
BolC1t01838H Brassica oleracea HOM05D004051 ORTHO05D004480 5.8e-10 67.4 70 52.9
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 7.5e-10 67.0 83 49.4
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 7.5e-10 67.0 80 47.5
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 7.5e-10 67.0 84 45.2
Aqoxy7G00101 Aquilegia oxysepala HOM05D002868 ORTHO05D023304 1.7e-09 65.9 61 59.0
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 2.2e-09 65.5 77 53.2
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 2.2e-09 65.5 95 43.2
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 1.9e-08 62.4 79 45.6
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 2.4e-08 62.0 77 45.5
Os06g0530200 Oryza sativa ssp. japonica HOM05D004051 ORTHO05D004480 4.6e-07 57.8 96 42.7
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 6.0e-07 57.4 60 56.7
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 1.0e-06 56.6 59 55.9
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 2.3e-06 55.5 59 50.8
FAN06G1266 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.9e-06 54.7 69 49.3
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 5.1e-06 54.3 155 31.6


User provided reference genes

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