Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 3.5e-166 588.2 294 100.0
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 8.0e-110 401.0 270 78.1
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.5e-105 385.6 247 78.9
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.3e-99 367.1 243 74.1
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 2.9e-99 365.9 245 76.7
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 6.4e-99 364.8 246 75.2
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 6.4e-99 364.8 242 74.8
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.1e-98 364.0 243 73.7
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 5.4e-98 361.7 251 74.5
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.7e-97 359.4 242 76.0
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.6e-97 358.6 242 73.1
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 4.6e-97 358.6 253 71.1
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.0e-96 357.5 242 75.6
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.3e-96 357.1 249 73.1
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.3e-96 356.3 255 71.0
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 3.0e-96 355.9 254 69.7
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 2.5e-95 352.8 247 71.7
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 3.3e-95 352.4 239 71.5
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.7e-94 348.6 245 71.0
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 4.0e-93 345.5 239 72.4
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 5.2e-93 345.1 236 71.6
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 5.2e-93 345.1 237 73.0
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 2.0e-92 343.2 243 71.6
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 4.4e-92 342.0 236 72.9
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 7.5e-92 341.3 245 71.4
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 7.5e-92 341.3 247 72.1
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 7.5e-92 341.3 250 70.0
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 9.8e-92 340.9 251 68.9
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.3e-91 340.5 237 72.6
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 1.3e-91 340.5 240 70.8
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.7e-91 340.1 249 67.9
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 6.4e-91 338.2 264 68.6
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 1.4e-90 337.0 253 66.0
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.4e-90 336.3 249 67.9
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.1e-90 335.5 235 71.9
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 7.0e-90 334.7 236 72.0
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 1.2e-89 334.0 247 69.6
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 1.2e-89 334.0 241 70.5
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.6e-89 333.6 236 70.8
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.0e-88 330.9 253 64.8
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 1.3e-88 330.5 220 74.1
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 3.0e-88 329.3 222 76.1
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.9e-88 328.9 253 66.4
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 8.6e-88 327.8 230 71.3
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.5e-87 327.0 257 65.4
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.9e-87 326.6 247 65.6
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 4.3e-87 325.5 251 67.7
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.2e-86 323.9 237 72.2
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.6e-86 323.6 236 71.2
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 1.6e-86 323.6 249 69.5
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 1.6e-86 323.6 239 68.6
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 4.7e-86 322.0 236 69.5
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 4.7e-86 322.0 241 68.5
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 4.7e-86 322.0 249 65.9
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.0e-85 318.9 193 78.8
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 6.8e-85 318.2 247 67.6
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 8.9e-85 317.8 247 67.6
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 8.9e-85 317.8 247 67.6
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 8.9e-85 317.8 236 70.8
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 2.6e-84 316.2 240 65.8
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 2.6e-84 316.2 247 66.0
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 3.4e-84 315.8 242 67.4
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 7.5e-84 314.7 246 65.9
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 1.1e-82 310.8 237 66.7
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 1.9e-82 310.1 234 67.1
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 2.4e-82 309.7 240 65.0
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.4e-82 309.7 234 65.0
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.2e-82 309.3 242 67.8
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 4.1e-82 308.9 189 80.4
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 4.1e-82 308.9 236 68.6
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 7.1e-82 308.1 235 65.1
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 7.1e-82 308.1 239 64.4
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 9.2e-82 307.8 236 67.4
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 1.6e-81 307.0 237 67.5
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 2.1e-81 306.6 239 66.5
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.1e-81 306.6 239 66.9
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.7e-81 306.2 178 83.7
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 2.7e-81 306.2 236 66.9
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 4.6e-81 305.4 254 63.4
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 4.6e-81 305.4 254 63.4
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 7.8e-81 304.7 240 67.1
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 7.8e-81 304.7 271 60.5
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 3.0e-80 302.8 240 64.6
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 3.9e-80 302.4 239 66.9
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 6.6e-80 301.6 249 62.7
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 3.3e-79 299.3 251 62.9
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 5.6e-79 298.5 278 60.1
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 9.5e-79 297.7 233 65.7
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 1.6e-78 297.0 250 63.2
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 1.6e-78 297.0 187 78.1
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.6e-78 297.0 182 79.7
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 2.1e-78 296.6 233 66.1
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 2.8e-78 296.2 233 67.0
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.7e-78 295.4 233 66.1
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 8.1e-78 294.7 255 61.6
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 8.1e-78 294.7 182 79.1
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 1.4e-77 293.9 180 78.3
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 5.2e-77 292.0 248 62.1
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 6.8e-77 291.6 276 58.7
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 8.9e-77 291.2 238 62.2
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.3e-75 287.3 181 77.9
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.9e-75 286.2 264 59.5
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 8.4e-75 284.6 220 67.3
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.9e-74 283.5 266 61.3
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.9e-74 283.5 190 72.1
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 1.9e-74 283.5 178 78.1
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.4e-74 283.1 266 60.5
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 2.4e-74 283.1 181 77.9
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 5.4e-74 282.0 226 64.6
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 3.5e-73 279.3 183 75.4
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.7e-72 276.9 184 73.4
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 5.1e-72 275.4 190 74.2
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 6.6e-72 275.0 192 69.8
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 8.6e-72 274.6 174 76.4
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 8.6e-72 274.6 228 62.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.5e-71 273.9 161 80.1
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 4.3e-71 272.3 273 55.7
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 7.3e-71 271.6 329 49.8
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 9.6e-71 271.2 188 72.3
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 9.6e-71 271.2 244 55.7
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 1.6e-70 270.4 220 65.5
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 2.1e-70 270.0 231 61.5
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 2.8e-70 269.6 181 74.0
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 8.1e-70 268.1 268 54.9
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 4.0e-69 265.8 249 54.6
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 2.6e-68 263.1 178 73.6
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 4.9e-67 258.8 245 58.8
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 4.9e-67 258.8 184 71.7
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 4.2e-66 255.8 190 67.9
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 9.3e-66 254.6 187 72.2
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 9.3e-66 254.6 247 56.3
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.6e-65 253.8 190 68.9
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 1.6e-65 253.8 190 68.9
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 1.0e-64 251.1 177 71.2
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 6.6e-64 248.4 162 74.7
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 1.1e-63 247.7 168 70.2
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.6e-63 245.4 248 56.5
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 2.1e-62 243.4 187 65.8
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 8.1e-62 241.5 229 55.9
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.4e-58 228.8 196 61.2
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 3.9e-56 222.6 134 79.1
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 8.7e-56 221.5 128 84.4
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 7.4e-55 218.4 159 70.4
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-53 214.5 222 54.1
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-53 214.5 222 54.1
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 4.0e-53 212.6 168 66.1
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.3e-53 212.2 147 70.7
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 4.2e-50 202.6 124 79.0
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.5e-47 194.1 123 73.2
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.7e-41 173.3 166 53.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 5.3e-37 159.1 238 37.4
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 2.4e-29 133.7 116 57.8
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 1.8e-24 117.5 185 41.1
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.9e-24 116.3 180 38.9
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 4.8e-22 109.4 109 56.9
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 5.9e-20 102.4 209 34.0
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.0e-19 101.7 69 71.0
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.6e-17 94.4 60 70.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 6.5e-11 72.4 48 62.5


User provided reference genes

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