Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37518 Davidia involucrata HOM05D000181 ORTHO05D182714 3.7e-100 368.2 187 100.0
TAR629G1994 Trochodendron aralioides HOM05D000181 ORTHO05D007406 2.6e-21 106.3 252 36.9
Nn1g00249 Nelumbo nucifera HOM05D000181 ORTHO05D007406 4.1e-19 99.0 249 32.9
Cpa.g.sc79.12 Carica papaya HOM05D000181 ORTHO05D007406 5.4e-19 98.6 253 32.8
Sc22g0004900 Simmondsia chinensis HOM05D000181 ORTHO05D007406 5.4e-19 98.6 253 32.0
Gorai.004G132200 Gossypium raimondii HOM05D000181 ORTHO05D007406 7.1e-19 98.2 252 31.3
Manes.02G008600 Manihot esculenta HOM05D000181 ORTHO05D007406 1.2e-18 97.4 247 32.0
Gohir.A08G112300 Gossypium hirsutum HOM05D000181 ORTHO05D007406 1.6e-18 97.1 252 31.3
Gohir.D08G125332 Gossypium hirsutum HOM05D000181 ORTHO05D007406 2.1e-18 96.7 252 31.3
Thecc.03G300400 Theobroma cacao HOM05D000181 ORTHO05D007406 4.6e-18 95.5 253 30.0
Atru.chr9.1924 Acer truncatum HOM05D000181 ORTHO05D007406 1.3e-17 94.0 247 32.0
CSS0016723 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D007406 3.0e-17 92.8 212 36.3
CSS0016692 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D007406 3.9e-17 92.4 243 34.2
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 5.1e-17 92.0 98 52.0
QL02p030075 Quercus lobata HOM05D000181 ORTHO05D007406 5.1e-17 92.0 185 36.8
Prupe.5G122500 Prunus persica HOM05D000181 ORTHO05D007406 6.6e-17 91.7 254 30.3
MBI07_g46373_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D007406 2.5e-16 89.7 75 60.0
PGR031G3953 Punica granatum HOM05D000181 ORTHO05D007406 2.5e-16 89.7 97 49.5
ClCG07G011510 Citrullus lanatus HOM05D000181 ORTHO05D007406 3.3e-16 89.4 182 37.4
Lj4g0006821 Lotus japonicus HOM05D000181 ORTHO05D007406 3.3e-16 89.4 182 35.2
Aqoxy5G04277 Aquilegia oxysepala HOM05D000181 ORTHO05D007406 4.3e-16 89.0 242 31.4
Eucgr.D01758 Eucalyptus grandis HOM05D000181 ORTHO05D007406 9.5e-16 87.8 72 58.3
RcHm_v2.0_Chr7g0194221 Rosa chinensis HOM05D000181 ORTHO05D007406 9.5e-16 87.8 256 29.7
Hund14209 Selenicereus undatus HOM05D000181 ORTHO05D007406 9.5e-16 87.8 180 35.0
Duzib084G0413 Durio zibethinus HOM05D000181 ORTHO05D007406 1.6e-15 87.0 253 30.0
Sed0021063 Sechium edule HOM05D000181 ORTHO05D007406 1.6e-15 87.0 183 36.6
Hma1.2p1_0440F.1_g153440 Hydrangea macrophylla HOM05D000181 ORTHO05D007406 2.1e-15 86.7 161 37.3
FAN13G1079 Fragaria x ananassa HOM05D002356 ORTHO05D007406 3.6e-15 85.9 246 28.5
FAN18G2206 Fragaria x ananassa HOM05D002356 ORTHO05D007406 3.6e-15 85.9 246 28.5
TWI60G1246 Tripterygium wilfordii HOM05D000181 ORTHO05D007406 4.7e-15 85.5 209 31.6
Cfa011985 Carpinus fangiana HOM05D000181 ORTHO05D007406 6.2e-15 85.1 253 32.4
Actinidia27312 Actinidia chinensis HOM05D000181 ORTHO05D007406 8.1e-15 84.7 243 31.7
MBI07_g14279_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D007406 1.4e-14 84.0 205 33.2
Sabra01G0066200 Salix brachista HOM05D000181 ORTHO05D007406 1.8e-14 83.6 163 35.0
Ciclev10018718m.g Citrus clementina HOM05D000181 ORTHO05D007406 2.3e-14 83.2 246 30.5
FvH4_5g04870 Fragaria vesca HOM05D000181 ORTHO05D007406 2.3e-14 83.2 246 27.6
FAN08G0678 Fragaria x ananassa HOM05D002356 ORTHO05D007406 3.1e-14 82.8 246 28.0
FAN18G2731 Fragaria x ananassa HOM05D000181 ORTHO05D007406 3.1e-14 82.8 246 28.0
PSO170G1750 Papaver somniferum HOM05D000181 ORTHO05D007406 5.2e-14 82.0 249 30.1
AUR62019859 Chenopodium quinoa HOM05D000181 ORTHO05D007406 6.8e-14 81.6 73 60.3
Cc08_g16240 Coffea canephora HOM05D000181 ORTHO05D007406 6.8e-14 81.6 244 29.5
Lj2A164T57 Lonicera japonica HOM05D000181 ORTHO05D007406 6.8e-14 81.6 252 30.6
Carub.0007s1714 Capsella rubella HOM05D000181 ORTHO05D007406 8.9e-14 81.3 183 33.9
Haze_09087 Corylus avellana HOM05D000181 ORTHO05D007406 8.9e-14 81.3 251 31.1
MELO3C001406.2 Cucumis melo HOM05D000181 ORTHO05D007406 8.9e-14 81.3 72 56.9
FAN04G1057 Fragaria x ananassa HOM05D002356 ORTHO05D007406 8.9e-14 81.3 194 30.9
AL7G29370 Arabidopsis lyrata HOM05D000181 ORTHO05D007406 1.2e-13 80.9 191 31.9
BraA01t01465Z Brassica rapa HOM05D002356 ORTHO05D007406 1.2e-13 80.9 195 32.8
CANSAT21G0203 Cannabis sativa HOM05D000181 ORTHO05D007406 1.2e-13 80.9 223 32.3
CsaV3_4G006700 Cucumis sativus L. HOM05D000181 ORTHO05D007406 1.5e-13 80.5 90 48.9
AUR62010860 Chenopodium quinoa HOM05D000181 ORTHO05D007406 2.0e-13 80.1 73 58.9
ATR0602G289 Amborella trichopoda HOM05D000181 ORTHO05D007406 2.6e-13 79.7 72 55.6
EL10Ac5g12935 Beta vulgaris HOM05D000181 ORTHO05D007406 2.6e-13 79.7 251 29.9
AT4G23940 Arabidopsis thaliana HOM05D000181 ORTHO05D007406 3.4e-13 79.3 183 33.3
Potri.001G089800 Populus trichocarpa HOM05D000181 ORTHO05D007406 3.4e-13 79.3 247 30.0
C01p19180 Brassica napus HOM05D002356 ORTHO05D007406 5.8e-13 78.6 201 31.8
MD06G1109500 Malus domestica HOM05D000181 ORTHO05D007406 5.8e-13 78.6 242 28.5
BcaNung01101 Brassica carinata HOM05D000181 ORTHO05D007406 7.6e-13 78.2 244 29.1
Thhalv10024337m.g Eutrema salsugineum HOM05D000181 ORTHO05D007406 9.9e-13 77.8 247 28.7
Sopen08g030790 Solanum pennellii HOM05D000181 ORTHO05D007406 9.9e-13 77.8 162 36.4
A01p15250 Brassica napus HOM05D002356 ORTHO05D007406 1.3e-12 77.4 196 32.1
Lalb_Chr16g0390691 Lupinus albus HOM05D000181 ORTHO05D007406 1.7e-12 77.0 169 35.5
Peaxi162Scf00074g00638 Petunia axillaris HOM05D000181 ORTHO05D007406 1.7e-12 77.0 95 44.2
BcaC09g50928 Brassica carinata HOM05D000181 ORTHO05D007406 2.2e-12 76.6 219 32.0
BolC1t01844H Brassica oleracea HOM05D002356 ORTHO05D007406 2.2e-12 76.6 219 32.0
GSVIVG01019239001 Vitis vinifera HOM05D000181 ORTHO05D007406 2.2e-12 76.6 165 33.9
CARHR231350 Cardamine hirsuta HOM05D000181 ORTHO05D007406 2.9e-12 76.3 193 31.1
CiPaw.11G119200 Carya illinoinensis HOM05D000181 ORTHO05D007406 2.9e-12 76.3 64 62.5
MD14G1130500 Malus domestica HOM05D000181 ORTHO05D007406 2.9e-12 76.3 211 29.4
Nitab4.5_0000798g0070 Nicotiana tabacum HOM05D000181 ORTHO05D007406 2.9e-12 76.3 161 35.4
PSO063G6474 Papaver somniferum HOM05D000181 ORTHO05D007406 2.9e-12 76.3 249 29.7
Solyc08g082530.4 Solanum lycopersicum HOM05D000181 ORTHO05D007406 2.9e-12 76.3 250 31.2
arahy.Tifrunner.gnm1.ann1.27DD66 Arachis hypogaea HOM05D000181 ORTHO05D007406 3.7e-12 75.9 206 31.1
CAN.G567.9 Capsicum annuum HOM05D000181 ORTHO05D007406 3.7e-12 75.9 208 28.4
Medtr8g099605 Medicago truncatula HOM05D000181 ORTHO05D007406 3.7e-12 75.9 186 34.4
arahy.Tifrunner.gnm1.ann1.K2TKXN Arachis hypogaea HOM05D000181 ORTHO05D007406 4.9e-12 75.5 206 31.1
MSTRG.25690 Avicennia marina HOM05D000181 ORTHO05D007406 4.9e-12 75.5 170 33.5
Sp7g21910 Schrenkiella parvula HOM05D000181 ORTHO05D007406 4.9e-12 75.5 72 52.8
TPR.G3384 Trifolium pratense HOM05D000181 ORTHO05D007406 4.9e-12 75.5 72 51.4
Peaxi162Scf00074g00741 Petunia axillaris HOM05D000181 ORTHO05D007406 8.4e-12 74.7 155 34.2
Aa31LG6G7180 Aethionema arabicum HOM05D000181 ORTHO05D007406 1.1e-11 74.3 201 30.8
Nitab4.5_0005962g0040 Nicotiana tabacum HOM05D000181 ORTHO05D007406 2.4e-11 73.2 247 27.9
VMungo0251G1494 Vigna mungo HOM05D000181 ORTHO05D007406 4.1e-11 72.4 181 33.1
COL.COLO4_10722 Corchorus olitorius HOM05D000181 ORTHO05D007406 7.1e-11 71.6 178 32.0
Oeu038548.1 Olea europaea HOM05D000181 ORTHO05D007406 9.2e-11 71.2 218 28.4
PGSC0003DMG400012269 Solanum tuberosum HOM05D000181 ORTHO05D007406 9.2e-11 71.2 249 28.5
Oeu009976.1 Olea europaea HOM05D000181 ORTHO05D007406 1.2e-10 70.9 98 39.8
DCAR_029910 Daucus carota HOM05D000181 ORTHO05D007406 3.5e-10 69.3 158 31.0
SGA_v2.0_scaffold305G47993 Striga asiatica HOM05D000181 ORTHO05D007406 3.5e-10 69.3 73 50.7
ECA240G1581 Erigeron canadensis HOM05D000181 ORTHO05D007406 4.6e-10 68.9 72 47.2
SalBow1G5541 Salvia bowleyana HOM05D000181 ORTHO05D007406 4.6e-10 68.9 222 29.7
Ah.12g052670 Amaranthus hybridus HOM05D000181 ORTHO05D007406 6.0e-10 68.6 116 37.1
Glyma.08G023900 Glycine max HOM05D000181 ORTHO05D007406 7.8e-10 68.2 99 44.4
HanXRQChr13g0415441 Helianthus annuus HOM05D000181 ORTHO05D007406 7.8e-10 68.2 72 48.6
Migut.A00625 Erythranthe guttata HOM05D000181 ORTHO05D007406 1.0e-09 67.8 100 39.0
Lsat_1_v5_gn_6_83680 Lactuca sativa HOM05D000181 ORTHO05D007406 2.3e-09 66.6 166 30.1
Phvul.002G299700 Phaseolus vulgaris HOM05D000181 ORTHO05D007406 2.3e-09 66.6 162 33.3
Ca_17471_v3 Cicer arietinum L. HOM05D000181 ORTHO05D007406 8.6e-09 64.7 169 32.5
Mapoly0052s0067 Marchantia polymorpha HOM05D000181 ORTHO05D007406 8.6e-09 64.7 72 38.9
AagrBONN_evm.TU.Sc2ySwM_362.2662 Anthoceros agrestis HOM05D000181 ORTHO05D007406 5.6e-08 62.0 98 33.7
unitig_37.g12129 Utricularia gibba HOM05D000181 ORTHO05D007406 8.1e-07 58.2 101 32.7
Pp3c19_2770 Physcomitrium patens HOM05D000181 ORTHO05D007406 5.2e-06 55.5 71 36.6


User provided reference genes

Program Settings