Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 5.9e-132 474.2 235 100.0
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 1.5e-82 310.1 206 76.7
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.1e-80 302.4 174 85.6
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 2.5e-74 282.7 179 78.8
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.3e-74 282.3 165 83.6
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 3.3e-74 282.3 165 83.6
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.8e-73 279.3 165 83.0
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 5.3e-72 275.0 181 79.0
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.3e-72 275.0 215 70.2
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 9.0e-72 274.2 153 87.6
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 9.0e-72 274.2 153 87.6
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 1.2e-71 273.9 210 70.5
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 4.5e-71 271.9 174 79.9
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 4.5e-71 271.9 211 68.7
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 5.9e-71 271.6 179 76.0
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 2.9e-70 269.2 197 71.1
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 3.8e-70 268.9 172 76.7
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 3.8e-70 268.9 178 76.4
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 3.8e-70 268.9 171 78.4
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 5.0e-70 268.5 172 76.7
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 5.0e-70 268.5 173 78.0
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 8.4e-70 267.7 172 76.2
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 1.1e-69 267.3 155 84.5
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.4e-69 266.9 209 67.9
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.9e-69 266.5 192 70.8
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 1.9e-69 266.5 168 81.5
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 5.5e-69 265.0 157 84.1
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 7.2e-69 264.6 161 82.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 9.3e-69 264.2 154 86.4
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 9.3e-69 264.2 165 80.0
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.2e-68 263.8 156 82.7
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.6e-68 263.5 170 79.4
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 2.1e-68 263.1 184 73.9
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.5e-68 262.3 170 78.8
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.5e-68 262.3 170 78.8
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 4.6e-68 261.9 178 74.7
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 4.6e-68 261.9 175 77.7
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.0e-67 260.8 183 73.8
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 1.0e-67 260.8 199 68.3
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.3e-67 260.4 168 78.0
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 1.8e-67 260.0 202 67.8
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 2.3e-67 259.6 178 76.4
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.3e-67 259.6 181 75.1
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.3e-67 259.6 173 76.3
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 3.0e-67 259.2 204 69.1
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 5.1e-67 258.5 199 70.4
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 8.7e-67 257.7 159 82.4
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 1.1e-66 257.3 202 67.3
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.1e-66 257.3 170 75.3
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 1.5e-66 256.9 171 76.0
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 1.5e-66 256.9 182 73.1
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 1.9e-66 256.5 180 73.3
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 1.9e-66 256.5 173 73.4
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 2.5e-66 256.1 170 75.9
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 3.3e-66 255.8 164 79.3
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 3.3e-66 255.8 202 66.8
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 4.3e-66 255.4 153 85.0
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 5.7e-66 255.0 158 79.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 5.7e-66 255.0 202 66.8
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 9.7e-66 254.2 154 81.2
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 1.3e-65 253.8 162 75.9
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 1.6e-65 253.4 214 65.4
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 2.2e-65 253.1 214 66.8
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 2.8e-65 252.7 152 81.6
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-65 252.7 178 73.0
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 2.8e-65 252.7 214 65.4
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 2.8e-65 252.7 214 65.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 2.8e-65 252.7 214 65.4
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 2.8e-65 252.7 161 76.4
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.7e-65 252.3 152 81.6
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 4.8e-65 251.9 197 69.0
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 6.3e-65 251.5 163 79.1
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 6.3e-65 251.5 156 80.1
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 6.3e-65 251.5 153 81.7
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 6.3e-65 251.5 153 81.7
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 6.3e-65 251.5 153 81.7
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 6.3e-65 251.5 197 68.5
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.3e-65 251.5 180 75.6
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 8.2e-65 251.1 174 74.1
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.1e-64 250.8 162 77.8
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.1e-64 250.8 183 73.8
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.4e-64 250.4 163 78.5
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 1.4e-64 250.4 153 81.0
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 1.8e-64 250.0 151 82.1
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 1.8e-64 250.0 180 75.0
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 4.1e-64 248.8 166 77.7
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.1e-64 248.8 166 77.7
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.1e-64 248.8 166 77.7
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.1e-64 248.8 196 67.9
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 4.1e-64 248.8 274 52.9
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 9.0e-64 247.7 179 70.4
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 9.0e-64 247.7 156 78.2
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 4.5e-63 245.4 198 66.7
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 5.0e-62 241.9 154 79.2
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 6.5e-62 241.5 155 79.4
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 8.5e-62 241.1 153 79.7
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 8.5e-62 241.1 170 72.4
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 3.2e-61 239.2 183 68.9
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 4.2e-61 238.8 155 78.7
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 6.1e-60 235.0 155 77.4
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.8e-59 233.4 152 76.3
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 5.1e-59 231.9 203 63.1
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 7.4e-58 228.0 153 75.2
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 2.2e-57 226.5 155 73.5
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 3.7e-57 225.7 185 64.3
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 6.3e-57 224.9 182 64.3
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.4e-56 223.8 176 66.5
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 3.1e-56 222.6 150 74.0
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 6.9e-56 221.5 121 89.3
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 1.7e-54 216.9 153 72.5
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 5.0e-54 215.3 166 68.7
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 3.2e-53 212.6 161 68.9
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 7.2e-53 211.5 265 48.7
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 2.1e-52 209.9 159 69.2
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 6.7e-51 204.9 190 62.6
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 2.0e-50 203.4 160 68.1
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 2.2e-49 199.9 155 63.9
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 4.1e-48 195.7 166 63.3
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 1.2e-47 194.1 119 76.5
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.5e-47 192.2 155 63.9
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.5e-47 192.2 155 63.9
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 7.7e-47 191.4 155 64.5
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.9e-46 189.5 222 51.8
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 2.9e-46 189.5 100 96.0
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 6.5e-46 188.3 143 69.2
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 8.0e-44 181.4 120 74.2
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.3e-43 179.9 120 73.3
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 4.8e-41 172.2 202 53.0
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 5.0e-38 162.2 95 81.1
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 5.2e-35 152.1 113 61.9
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.2e-34 151.0 113 61.1
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 1.2e-34 151.0 151 51.0
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 4.4e-34 149.1 79 93.7
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 9.8e-34 147.9 137 54.0
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 3.1e-32 142.9 106 59.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 9.1e-32 141.4 122 55.7
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 1.2e-28 131.0 94 66.0
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.2e-25 120.2 67 86.6
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.2e-25 120.2 67 86.6
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 8.3e-25 118.2 79 77.2
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 2.4e-24 116.7 98 64.3
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 3.0e-19 99.8 86 58.1
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 4.4e-18 95.9 70 70.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.3e-17 94.4 166 36.7
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 5.6e-13 79.0 50 74.0
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 7.8e-07 58.5 63 52.4
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 1.0e-06 58.2 38 73.7


User provided reference genes

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