Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1369.8 711 100.0
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1273.5 708 92.1
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1272.7 708 91.8
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1263.1 712 90.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1249.2 707 88.7
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1241.5 708 88.7
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1238.8 706 88.2
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1237.2 715 89.0
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1236.1 700 89.6
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1233.0 708 89.8
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1231.1 698 90.1
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1230.7 709 88.0
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1229.9 708 87.4
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1229.2 707 89.7
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1228.8 703 88.3
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1228.4 709 86.6
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1226.1 712 87.5
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1224.5 700 88.7
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1224.5 711 87.5
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1222.6 703 88.1
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1222.6 701 87.3
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1221.5 700 88.7
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1220.3 700 88.6
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1219.5 705 86.2
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1219.5 708 86.3
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1217.6 700 88.3
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1215.3 712 86.8
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1214.9 700 88.0
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1213.0 696 88.1
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1212.6 700 87.0
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1211.4 708 87.6
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1209.5 704 86.2
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1208.4 707 86.3
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1207.6 700 88.1
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1206.4 700 87.7
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1206.0 699 87.6
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1206.0 704 86.8
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1205.7 700 86.9
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1200.7 700 86.7
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1199.5 707 88.5
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1195.3 726 84.8
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1194.1 701 85.9
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1192.2 712 87.6
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1191.8 704 85.2
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1189.9 714 86.7
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1184.1 701 85.3
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1182.2 700 86.0
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1181.8 697 85.4
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1177.5 703 83.9
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1177.2 710 85.6
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1177.2 710 85.6
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1176.4 700 85.1
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1173.7 707 84.3
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1168.3 705 85.0
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1165.2 684 86.0
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1163.7 695 87.1
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1162.1 697 84.1
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1160.6 737 83.0
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1158.7 706 80.5
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1157.5 700 83.0
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1156.0 706 80.5
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1142.9 706 79.9
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1132.9 706 80.0
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1127.9 700 83.6
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1127.1 702 81.2
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1121.7 701 82.3
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1119.4 701 80.0
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1118.2 701 81.0
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1117.8 701 80.9
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1117.4 693 83.1
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 701 80.9
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 701 80.7
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1114.8 701 80.7
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1113.6 702 80.8
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1111.7 701 80.6
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1108.6 721 80.6
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1105.1 657 85.4
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1102.4 702 79.2
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1102.0 697 79.2
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1100.1 700 79.0
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 701 79.0
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1098.2 701 78.9
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1096.3 701 78.9
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1095.5 702 78.3
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1092.4 699 78.4
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 701 78.9
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 701 78.9
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 701 78.9
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1085.1 615 88.1
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 0.0e+00 1077.0 615 88.1
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 4.9e-312 1074.7 697 81.3
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 9.7e-311 1069.7 710 80.0
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.8e-310 1067.4 690 80.7
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 3.4e-308 1061.2 708 76.3
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 6.1e-305 1050.4 660 80.3
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 8.8e-304 1046.6 655 81.7
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.3e-302 1042.7 707 75.4
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 2.8e-302 1041.6 702 75.8
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 4.5e-300 1034.2 692 76.3
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.7e-300 1033.5 705 75.0
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.7e-299 1032.3 702 74.2
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.0e-297 1023.5 735 75.9
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 7.0e-293 1010.4 587 87.2
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 1.0e-291 1006.5 699 75.1
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.1e-289 998.8 708 73.0
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.8e-288 995.7 637 77.9
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.1e-285 984.9 569 88.8
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 5.9e-284 980.7 541 91.5
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.7e-276 955.3 732 71.7
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 5.0e-275 951.0 706 73.5
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.1e-256 890.2 699 67.5
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 6.8e-248 860.9 531 81.7
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.6e-243 844.3 570 76.5
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.9e-238 828.9 538 79.2
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 2.1e-233 812.8 450 92.0
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 1.0e-211 740.7 616 65.4
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 3.3e-210 735.7 693 56.0
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.7e-202 708.4 551 72.4
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 2.0e-199 699.9 627 57.3
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 7.4e-194 681.4 403 86.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.7e-194 681.0 393 88.3
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 8.2e-185 651.4 517 68.3
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.3e-174 617.5 637 50.7
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.9e-167 592.0 639 49.1
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 8.5e-166 588.2 638 48.3
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-161 573.9 394 78.7
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.6e-143 514.2 719 45.1
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.2e-140 504.6 630 43.8
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.4e-138 496.5 637 41.9
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.7e-135 486.9 643 41.8
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.5e-133 480.3 306 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.5e-133 478.4 623 43.5
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.7e-110 404.4 399 60.9
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 7.4e-109 399.1 399 53.4
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.4e-107 394.0 249 81.1
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.6e-92 344.7 218 75.2
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.8e-73 280.4 225 68.9
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-58 232.3 171 74.3
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.8e-57 227.3 125 85.6
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.3e-40 171.0 140 60.0
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.5e-32 144.8 78 91.0
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 8.3e-28 129.8 101 63.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.0e-25 120.6 63 85.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.8e-23 114.8 59 88.1
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 5.2e-22 110.5 95 57.9
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 1.7e-17 95.5 67 74.6
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 5.1e-17 94.0 67 73.1
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 1.1e-16 92.8 62 77.4
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 1.9e-16 92.0 56 76.8
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 4.3e-16 90.9 62 77.4
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 1.8e-14 85.5 57 77.2
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7


User provided reference genes

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